pycom17g25290

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
23412806 .. 23423165
10360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g25290.3

Sequence Viewer

Length: 606 bp
ATGAACGGTCTGAGCTTTAGAATTCTTGAAATGAATTCGACCACTGCTCCTCGGACTGTTAAGGTTGCTAGGCAGGATTACCGGGGTAGTATCTGCCCGCTGACTTTCGTCAACACCACCCTCAACTTCTCTCTGTTTAATTATGCCTCTGGTTATACAAACATGACATTTTACTACCTATGCAATATCAACAACATAGGGCTTCCTAGCACGCAGTGCAACATAAGCAATACAGTGAGCCCTGTTTTCTATGCGACACGTTCGATGGTTGAGCAGACATCTTCTGTCAGCTGTACAGATGAGGTTATTGTTCCGGTTTATACAGCAGCTGCTCAGGCTATAGAGGCCAGTCAAACAACCGTCAGCGATGCTGTAAACAGGGACTTCCCATTGGAATTGGAGATTGACAGCAATCAATGTAACAAATGTGAGGAATCAGGAGGACAGTGTGGGCTTAACAATACTATTAATTCTGGATTCAGTTGCTTTTGCCCAGATCAAGCCTATGCATCCATATGTAATGGAACTAGTAATTCAAACATTTGGGTCCTTTCTGCTCCAATCGTTGTTTCCATTTCTTTTGATCGCTTCCTTCCTTTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

202

Amino Acids

21.98

Weight (kDa)

4.43

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 21, 34
AdeI CACNNNGTG 1 cut(s) 216
AfaI GTAC 1 cut(s) 295
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 2 cut(s) 29, 537
AhlI ACTAGT 1 cut(s) 527
AjuI GAANNNNNNNTTGG 2 cut(s) 553, 585
AluBI AGCT 3 cut(s) 15, 291, 329
AluI AGCT 3 cut(s) 15, 291, 329
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 326, 329
ApoI RAATTY 2 cut(s) 21, 34
AseI ATTAAT 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 547
AsuC2I CCSGG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 316, 338
BccI CCATC 1 cut(s) 259
BcnI CCSGG 1 cut(s) 83
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 3 cut(s) 69, 207, 528
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 2 cut(s) 327, 330
BlsI GCNGC 2 cut(s) 328, 331
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 358, 518
BoxI GACNNNNGTC 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 50, 82
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bse1I ACTGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 50, 82
BseGI GGATG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 316, 338
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 2 cut(s) 82, 314
BslFI GGGAC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 242
Bsp1407I TGTACA 1 cut(s) 293
Bsp143I GATC 2 cut(s) 496, 583
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 548
BsrGI TGTACA 1 cut(s) 293
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 50, 82
BssMI GATC 2 cut(s) 496, 583
Bst4CI ACNGT 5 cut(s) 8, 58, 235, 361, 447
BstAPI GCANNNNNTGC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 98, 212
BstDEI CTNAG 2 cut(s) 11, 333
BstF5I GGATG 1 cut(s) 509
BstKTI GATC 2 cut(s) 499, 586
BstMBI GATC 2 cut(s) 496, 583
BstMWI GCNNNNNNNGC 4 cut(s) 216, 225, 335, 344
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 316, 338
BsuRI GGCC 1 cut(s) 347
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 509
BtsI GCAGTG 2 cut(s) 42, 221
BtsIMutI CAGTG 4 cut(s) 42, 221, 240, 452
Cac8I GCNNGC 2 cut(s) 98, 212
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 163
CviJI RGCY 9 cut(s) 15, 202, 240, 291, 329, 338, 347, 454, 503
CviKI_1 RGCY 9 cut(s) 15, 202, 240, 291, 329, 338, 347, 454, 503
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 11, 333
DpnI GATC 2 cut(s) 498, 585
DpnII GATC 2 cut(s) 496, 583
DraIII CACNNNGTG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 547
EcoO109I RGGNCCY 1 cut(s) 547
EcoRI GAATTC 2 cut(s) 21, 34
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 1 cut(s) 166
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 105
FauNDI CATATG 1 cut(s) 515
Fnu4HI GCNGC 2 cut(s) 327, 330
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 327, 330
FspBI CTAG 3 cut(s) 69, 207, 528
GluI GCNGC 2 cut(s) 327, 330
HaeIII GGCC 1 cut(s) 347
HapII CCGG 2 cut(s) 82, 314
Hin1II CATG 1 cut(s) 166
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 434, 477
HpaII CCGG 2 cut(s) 82, 314
Hpy166II GTNNAC 2 cut(s) 112, 376
Hpy188I TCNGA 2 cut(s) 12, 54
Hpy188III TCNNGA 3 cut(s) 26, 438, 474
Hpy8I GTNNAC 2 cut(s) 112, 376
HpyAV CCTTC 1 cut(s) 602
HpyCH4III ACNGT 5 cut(s) 8, 58, 235, 361, 447
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 3 cut(s) 183, 219, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 225, 335, 344
HpyF3I CTNAG 2 cut(s) 11, 333
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 496, 583
LmnI GCTCC 2 cut(s) 52, 562
Lsp1109I GCAGC 2 cut(s) 316, 338
LweI GCATC 2 cut(s) 358, 518
MaeI CTAG 3 cut(s) 69, 207, 528
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 1 cut(s) 419
MalI GATC 2 cut(s) 498, 585
MboI GATC 2 cut(s) 496, 583
MboII GAAGA 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 6 cut(s) 21, 34, 139, 395, 469, 532
MnlI CCTC 7 cut(s) 60, 131, 157, 295, 337, 424, 434
Mph1103I ATGCAT 1 cut(s) 511
MseI TTAA 5 cut(s) 60, 138, 456, 468, 604
MslI CAYNNNNRTG 1 cut(s) 514
MspA1I CMGCKG 3 cut(s) 100, 291, 329
MspI CCGG 2 cut(s) 82, 314
MspR9I CCNGG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 216, 225, 335, 344
NciI CCSGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 515
NdeII GATC 2 cut(s) 496, 583
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 511
PfeI GAWTC 2 cut(s) 434, 477
PkrI GCNGC 2 cut(s) 328, 331
PpuMI RGGWCCY 1 cut(s) 547
PshAI GACNNNNGTC 1 cut(s) 107
PshBI ATTAAT 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 547
PspN4I GGNNCC 1 cut(s) 548
PspPI GGNCC 1 cut(s) 547
PspPPI RGGWCCY 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 329
PvuII CAGCTG 2 cut(s) 291, 329
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 514
SaqAI TTAA 5 cut(s) 60, 138, 456, 468, 604
SatI GCNGC 2 cut(s) 327, 330
Sau3AI GATC 2 cut(s) 496, 583
Sau96I GGNCC 1 cut(s) 547
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 242
SetI ASST 7 cut(s) 17, 66, 180, 262, 293, 306, 331
SfaNI GCATC 2 cut(s) 358, 518
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 514
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 6 cut(s) 21, 34, 139, 395, 469, 532
SsiI CCGC 1 cut(s) 98
SspMI CTAG 3 cut(s) 69, 207, 528
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 5 cut(s) 8, 58, 235, 361, 447
TaiI ACGT 1 cut(s) 262
TaqI TCGA 3 cut(s) 38, 263, 600
TasI AATT 6 cut(s) 21, 34, 139, 395, 469, 532
TatI WGTACW 1 cut(s) 293
TfiI GAWTC 2 cut(s) 434, 477
Tru1I TTAA 5 cut(s) 60, 138, 456, 468, 604
Tru9I TTAA 5 cut(s) 60, 138, 456, 468, 604
TscAI CASTG 4 cut(s) 49, 221, 240, 452
TseI GCWGC 2 cut(s) 326, 329
TspDTI ATGAA 2 cut(s) 17, 47
TspRI CASTG 4 cut(s) 49, 221, 240, 452
VpaK11BI GGWCC 1 cut(s) 547
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 2 cut(s) 21, 34
XspI CTAG 3 cut(s) 69, 207, 528
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.