RchiOBHm_Chr1g0326521

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000114
Physical Location & Seq
Reverse (-)
15058149 .. 15061694
3546 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55614

Sequence Viewer

Length: 2481 bp
ATGAACCTTTTTTTCCTTCCTCTGCCTCACTGTTTCCGAATGGGGTGGCTCTTGTGTTACCTCGTAACAGTGCTCTTATCTCATATCCTGCCATTCTGTACCTGCCAAGACAAAATTGTACCAGGACAGCATATCAGTGGTAACCTGACTTTGGTTTCTTCCCTTGGGACCTTTTCATTAGGCTTCTTCAATCCTGAAAATTCTACTAAATACTTCCTTGGTATACGATTCAACAAATCCCCAACTACTGCATTAGTATGGGTAGCTAATAGAAAATCTCCACTTGATTCTCCGGGTGTCTTTATGCTCAGCAGTGATGGAAATCTTGTGGTGTTGGATCAGACTAGAAAACTTGTCTGGTCAACTAAAGCATCCGTATCTGCTTCTGCAATGAATCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACTTTGTGGCAGAGCTTCGATCATCCCTCTGATACTGCGTTGCCTGGCATGAAGATTAGCTTGAACAAAACGACTGGCCAACAAAGGCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAGTTCACCTTCGGCATAGATCCTAAAGTACCATTTCAGGCCTTTATCTGGAAGGAAACTACTCCGTATGTTAGAAGTTCTGTGTACGTTGCCCAGTATGCAAGAACACAGTTTCAAAATCCAGGTGGAACTGCGTTTTTCAATTCATACAACTTTGATGTTGATGAGGTTTATCTTGCTTGCAGTGTCTCGGATAGCTCAGTAAAATGGAGGGCCTGGTTGGATCCCACGGGGCAACTTAAACAGCAGTTGTGGCAGAATTCTAGTAAAACGTGGTTGGACGTAGGGAATCCAGGTGATATCTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGTGAACCCCTGTCATCACCATGCAAGTGTTTGACTGGTTTTACAGCCAAGTTTCCGAACCAATCGGCGGTAGGGGATTGGTCCGGTGGCTGCATTAGGGAAAAGGTGTTGACATGTGGTAACGGCATACAAGGTTACTTTTCAAAGCTTGAAAAGGTGAAACTGCCGGATCATTCTGTTCTGTTAGAGAATAGGAGTATGAGCGAGTGTGACTCTGAATGCCAGCGGAACTGTTCTTGTACAGCTTATGCTTATGTAAATGCGACAGATGGAAGTAATATTGGGACTTGTTTTGCATGGTTTGGCGAATTACTGGATCTAGTAGAGAATAAAACTACTAGTGCAAATGATATTCATATTCGTGTTCATGGCTCCGAACTAGGCAAAAAGGGTCTTTCCGTTAATTCCTTGAAGCGGACCCTTGTAATTGCAATAGTCTCTGCAGCTGCAGTTGGATTGCTTACAATAACTTTTGGCTATTTCTTTTGGAAGAAAAAATTGGAAAAGAAAGGTAAGCAGAATATAAGTAATGTTAGTGCAGGAGGTGGGAAGAATGATACAGAATTACCACTCTTCAGTTTAAGGAGTATGCTAGCTGCTACAAACAACTTCTCTGAAGCGAATAAGCTTGGAGAGGGGGGGTTCGGCCCTGTTTATAAGGGAATTTTGCCAGAAAATCAAGAAGTGGCCATAAAGAGGCTATCAAAGAAGTCTGGGCAAGGACATCATGAGTTCAAGAATGAGTTGAAACTTATAGCCAAACTCCAGCATACCAATCTTGTAAGGCTATTGGGTTGTTGTATGGAAGGAGATGAAATGATATTGATCTATGAATACATGTCTAATCGAAGTTTGGACAAATTTTTGTTTGATGCCTTTGAAAAGATAAAGTTAGATTGGGATACACGCTTTCGAATTATACAAGGTATTGCTCAAGGAGTACTATATATCCACAAGTACTCTAGATTGAAAATCATCCACAGAGATCTAAAAGCAAGCAATGTTCTGTTGGATGGAACAATGAACCCCAAAGTGTCTGACTTTGGAATGGCGAGAATTTTTGACATAAATCAAATTGAAGCAAATACTAACAAGGTTGTTGGAACATACGGCTATATGTCTCCTGAATATGCACTCTTTGGTCATTTCTCCGAGAAATTGGATGTATTTAGCTTCGGAGTGTTGTTGTTAGAGATTGTAAGCGGAAAGAAGAATGCTTCTTTTTATAGCTTTGAAAATTCACTAACGCTTGCTCAATGGGTATGGGAATTATGGAAAGAAGGTAGAGGAGTGGAGGTAATTGATGCATCAGTAAGGGAAACATGCCGGATTCATGAAGCTTTGAGGTGTATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGTTGATCGACCAACAATGTCATCCGTGATTCATATGCTTGAGGTTGACGAAGCTACATCACTTCCACCCTCCAAAGAACCAGCTTTTTCAACATGTAAAAATTCAAGTCCTGTTACCATTTTTTCTAACAATGTAATCACCATTACTTTGCCAGAACCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

826

Amino Acids

91.91

Weight (kDa)

8.19

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 85 - 185 2.8e-31 D-mannose binding lectin
S_locus_glycop PF00954 244 - 327 2.9e-14 S-locus glycoprotein domain
PAN_2 PF08276 356 - 417 2.7e-14 PAN-like domain
Pkinase PF00069 515 - 717 1e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 517 - 784 1.6e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1587
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 540
AccI GTMKAC 1 cut(s) 223
AciI CCGC 5 cut(s) 906, 998, 1156, 1345, 2133
AclWI GGATC 7 cut(s) 345, 563, 596, 800, 813, 1107, 1254
AcoI YGGCCR 2 cut(s) 529, 1617
AcsI RAATTY 7 cut(s) 199, 841, 1593, 1790, 1986, 2167, 2416
AcuI CTGAAG 2 cut(s) 1489, 1566
AcyI GRCGYC 1 cut(s) 541
AdeI CACNNNGTG 1 cut(s) 459
AfaI GTAC 7 cut(s) 100, 120, 612, 668, 1171, 1872, 1889
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 6 cut(s) 151, 578, 630, 997, 1344, 1626
AflIII ACRYGT 3 cut(s) 1043, 1767, 2408
AhlI ACTAGT 1 cut(s) 1268
AjnI CCWGG 6 cut(s) 121, 496, 551, 703, 797, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 1412, 1444
AloI GAACNNNNNNTCC 2 cut(s) 417, 449
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 3 cut(s) 775, 1372, 2055
AlwI GGATC 7 cut(s) 345, 563, 596, 800, 813, 1107, 1254
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 5 cut(s) 529, 621, 795, 1576, 1617
ApeKI GCWGC 5 cut(s) 557, 1020, 1373, 1376, 1526
ApoI RAATTY 7 cut(s) 199, 841, 1593, 1790, 1986, 2167, 2416
AspLEI GCGC 2 cut(s) 543, 562
AspS9I GGNCC 6 cut(s) 168, 795, 908, 1011, 1347, 1577
AsuC2I CCSGG 2 cut(s) 294, 579
AsuHPI GGTGA 6 cut(s) 580, 890, 939, 944, 1099, 2446
AsuII TTCGAA 1 cut(s) 1843
AsuNHI GCTAGC 1 cut(s) 1522
AvaII GGWCC 4 cut(s) 168, 908, 1011, 1347
BalI TGGCCA 2 cut(s) 531, 1619
BamHI GGATCC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 5 cut(s) 569, 1007, 1363, 1385, 1513
BccI CCATC 3 cut(s) 311, 1193, 1937
BceAI ACGGC 2 cut(s) 1069, 2056
BciT130I CCWGG 6 cut(s) 123, 498, 553, 705, 799, 876
BciVI GTATCC 3 cut(s) 412, 1825, 2291
BcnI CCSGG 2 cut(s) 294, 579
BcoDI GTCTC 3 cut(s) 775, 1372, 2055
BcuI ACTAGT 1 cut(s) 1268
BfaI CTAG 8 cut(s) 345, 413, 846, 1250, 1269, 1310, 1523, 1893
BfmI CTRYAG 2 cut(s) 1371, 1377
BfoI RGCGCY 2 cut(s) 544, 563
BfuAI ACCTGC 1 cut(s) 110
BfuI GTATCC 3 cut(s) 412, 1825, 2291
BglII AGATCT 1 cut(s) 1915
BisI GCNGC 5 cut(s) 558, 1021, 1374, 1377, 1527
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 5 cut(s) 559, 1022, 1375, 1378, 1528
BmcAI AGTACT 2 cut(s) 1872, 1889
Bme1390I CCNGG 8 cut(s) 123, 294, 498, 553, 579, 705, 799, 876
Bme18I GGWCC 4 cut(s) 168, 908, 1011, 1347
BmgT120I GGNCC 6 cut(s) 168, 795, 908, 1011, 1347, 1577
BmiI GGNNCC 6 cut(s) 169, 542, 807, 910, 1303, 1349
BmrFI CCNGG 8 cut(s) 123, 294, 498, 553, 579, 705, 799, 876
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 4 cut(s) 380, 1792, 2224, 2246
BmtI GCTAGC 1 cut(s) 1526
BmuI ACTGGG 1 cut(s) 670
BplI GAGNNNNNCTC 2 cut(s) 1127, 1159
BpmI CTGGAG 2 cut(s) 1679, 2298
Bpu1102I GCTNAGC 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 1843
BpuEI CTTGAG 2 cut(s) 1848, 2375
BpuMI CCSGG 2 cut(s) 294, 579
BsaBI GATNNNNATC 2 cut(s) 321, 1754
BsaHI GRCGYC 1 cut(s) 541
BsaJI CCNNGG 4 cut(s) 163, 217, 552, 810
BsaWI WCCGGW 2 cut(s) 422, 1013
BsaXI ACNNNNNCTCC 2 cut(s) 2211, 2241
Bsc4I CCNNNNNNNGG 6 cut(s) 151, 578, 630, 997, 1344, 1626
Bse1I ACTGG 6 cut(s) 409, 532, 676, 970, 1248, 2315
Bse3DI GCAATG 3 cut(s) 396, 901, 1936
Bse8I GATNNNNATC 2 cut(s) 321, 1754
BseBI CCWGG 6 cut(s) 123, 498, 553, 705, 799, 876
BseDI CCNNGG 4 cut(s) 163, 217, 552, 810
BseGI GGATG 7 cut(s) 371, 475, 548, 1905, 1948, 2098, 2336
BseJI GATNNNNATC 2 cut(s) 321, 1754
BseLI CCNNNNNNNGG 6 cut(s) 151, 578, 630, 997, 1344, 1626
BseMI GCAATG 3 cut(s) 396, 901, 1936
BseMII CTCAG 3 cut(s) 322, 428, 795
BseNI ACTGG 6 cut(s) 409, 532, 676, 970, 1248, 2315
BseRI GAGGAG 1 cut(s) 2232
BseXI GCAGC 5 cut(s) 569, 1007, 1363, 1385, 1513
BsgI GTGCAG 1 cut(s) 1488
BshFI GGCC 5 cut(s) 531, 623, 797, 1578, 1619
BshNI GGYRCC 1 cut(s) 540
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 6 cut(s) 293, 423, 579, 1014, 1097, 2257
BslFI GGGAC 3 cut(s) 181, 894, 1228
BslI CCNNNNNNNGG 6 cut(s) 151, 578, 630, 997, 1344, 1626
BsmAI GTCTC 3 cut(s) 775, 1372, 2055
BsmFI GGGAC 3 cut(s) 181, 894, 1228
BsmI GAATGC 2 cut(s) 1154, 2149
BsnI GGCC 5 cut(s) 531, 623, 797, 1578, 1619
Bsp119I TTCGAA 1 cut(s) 1843
Bsp1286I GDGCHC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 1169
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 5 cut(s) 906, 998, 1156, 1345, 2133
BspANI GGCC 5 cut(s) 531, 623, 797, 1578, 1619
BspCNI CTCAG 3 cut(s) 321, 429, 794
BspHI TCATGA 2 cut(s) 1657, 2263
BspLI GGNNCC 6 cut(s) 169, 542, 807, 910, 1303, 1349
BspMAI CTGCAG 2 cut(s) 1375, 1381
BspMI ACCTGC 1 cut(s) 110
BspOI GCTAGC 1 cut(s) 1526
BspPI GGATC 7 cut(s) 345, 563, 596, 800, 813, 1107, 1254
BspT104I TTCGAA 1 cut(s) 1843
BspT107I GGYRCC 1 cut(s) 540
BsrDI GCAATG 3 cut(s) 396, 901, 1936
BsrGI TGTACA 1 cut(s) 1169
BsrI ACTGG 6 cut(s) 409, 532, 676, 970, 1248, 2315
BssECI CCNNGG 4 cut(s) 163, 217, 552, 810
BssNAI GTATAC 1 cut(s) 224
BssNI GRCGYC 1 cut(s) 541
BssT1I CCWWGG 2 cut(s) 163, 217
Bst1107I GTATAC 1 cut(s) 224
Bst2UI CCWGG 6 cut(s) 123, 498, 553, 705, 799, 876
Bst4CI ACNGT 4 cut(s) 32, 70, 693, 1163
Bst6I CTCTTC 1 cut(s) 1508
BstACI GRCGYC 1 cut(s) 541
BstAUI TGTACA 1 cut(s) 1169
BstBI TTCGAA 1 cut(s) 1843
BstC8I GCNNGC 5 cut(s) 763, 1154, 1524, 1927, 2181
BstDEI CTNAG 3 cut(s) 308, 437, 781
BstDSI CCRYGG 1 cut(s) 810
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 7 cut(s) 371, 475, 548, 1905, 1948, 2098, 2336
BstH2I RGCGCY 2 cut(s) 544, 563
BstHHI GCGC 2 cut(s) 543, 562
BstMAI GTCTC 3 cut(s) 775, 1372, 2055
BstMWI GCNNNNNNNGC 2 cut(s) 680, 835
BstNI CCWGG 6 cut(s) 123, 498, 553, 705, 799, 876
BstNSI RCATGY 4 cut(s) 1047, 1771, 2256, 2412
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 8 cut(s) 121, 292, 496, 551, 577, 703, 797, 874
BstSFI CTRYAG 2 cut(s) 1371, 1377
BstV1I GCAGC 5 cut(s) 569, 1007, 1363, 1385, 1513
BstX2I RGATCY 4 cut(s) 601, 805, 1246, 1915
BstYI RGATCY 4 cut(s) 601, 805, 1246, 1915
BstZ17I GTATAC 1 cut(s) 224
BsuI GTATCC 3 cut(s) 412, 1825, 2291
BsuRI GGCC 5 cut(s) 531, 623, 797, 1578, 1619
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 7 cut(s) 371, 475, 548, 1905, 1948, 2098, 2336
BtsI GCAGTG 2 cut(s) 319, 772
BtsIMutI CAGTG 5 cut(s) 28, 75, 142, 319, 772
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 5 cut(s) 763, 1154, 1524, 1927, 2181
CciI TCATGA 2 cut(s) 1657, 2263
CfoI GCGC 2 cut(s) 543, 562
Cfr13I GGNCC 6 cut(s) 168, 795, 908, 1011, 1347, 1577
Csp6I GTAC 7 cut(s) 99, 119, 611, 667, 1170, 1871, 1888
CviQI GTAC 7 cut(s) 99, 119, 611, 667, 1170, 1871, 1888
DdeI CTNAG 3 cut(s) 308, 437, 781
DinI GGCGCC 1 cut(s) 542
DraIII CACNNNGTG 1 cut(s) 459
EaeI YGGCCR 2 cut(s) 529, 1617
Eam1104I CTCTTC 1 cut(s) 1508
EarI CTCTTC 1 cut(s) 1508
Eco130I CCWWGG 2 cut(s) 163, 217
Eco147I AGGCCT 1 cut(s) 623
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 4 cut(s) 168, 908, 1011, 1347
Eco47III AGCGCT 1 cut(s) 561
Eco57I CTGAAG 2 cut(s) 1489, 1566
Eco91I GGTNACC 1 cut(s) 140
EcoO109I RGGNCCY 2 cut(s) 168, 795
EcoO65I GGTNACC 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 841
EcoRII CCWGG 6 cut(s) 121, 496, 551, 703, 797, 874
EcoRV GATATC 1 cut(s) 883
EcoT14I CCWWGG 2 cut(s) 163, 217
EcoT22I ATGCAT 1 cut(s) 2239
EgeI GGCGCC 1 cut(s) 542
EheI GGCGCC 1 cut(s) 542
ErhI CCWWGG 2 cut(s) 163, 217
FalI AAGNNNNNCTT 4 cut(s) 497, 529, 575, 607
FaqI GGGAC 3 cut(s) 181, 894, 1228
FauNDI CATATG 1 cut(s) 2349
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 558, 1021, 1374, 1377, 1527
FokI GGATG 7 cut(s) 358, 462, 535, 1892, 1955, 2105, 2323
Fsp4HI GCNGC 5 cut(s) 558, 1021, 1374, 1377, 1527
FspBI CTAG 8 cut(s) 345, 413, 846, 1250, 1269, 1310, 1523, 1893
GlaI GCGC 2 cut(s) 542, 561
GluI GCNGC 5 cut(s) 558, 1021, 1374, 1377, 1527
GsuI CTGGAG 2 cut(s) 1679, 2298
HaeII RGCGCY 2 cut(s) 544, 563
HaeIII GGCC 5 cut(s) 531, 623, 797, 1578, 1619
HapII CCGG 6 cut(s) 293, 423, 579, 1014, 1097, 2257
HhaI GCGC 2 cut(s) 543, 562
Hin1I GRCGYC 1 cut(s) 541
Hin6I GCGC 2 cut(s) 541, 560
HinP1I GCGC 2 cut(s) 541, 560
HincII GTYRAC 3 cut(s) 363, 1041, 2362
HindII GTYRAC 3 cut(s) 363, 1041, 2362
HindIII AAGCTT 3 cut(s) 1076, 1556, 2268
HinfI GANTC 7 cut(s) 228, 287, 394, 871, 1142, 2260, 2344
HpaII CCGG 6 cut(s) 293, 423, 579, 1014, 1097, 2257
HphI GGTGA 6 cut(s) 580, 890, 939, 944, 1099, 2446
Hpy166II GTNNAC 7 cut(s) 224, 363, 588, 667, 935, 1041, 2362
Hpy188III TCNNGA 9 cut(s) 194, 631, 1610, 1658, 1666, 1893, 2054, 2264, 2306
Hpy8I GTNNAC 7 cut(s) 224, 363, 588, 667, 935, 1041, 2362
HpyAV CCTTC 5 cut(s) 26, 601, 628, 1730, 2204
HpyCH4III ACNGT 4 cut(s) 32, 70, 693, 1163
HpyCH4IV ACGT 3 cut(s) 669, 854, 864
HpyF10VI GCNNNNNNNGC 2 cut(s) 680, 835
HpyF3I CTNAG 3 cut(s) 308, 437, 781
HpySE526I ACGT 3 cut(s) 669, 854, 864
Hsp92I GRCGYC 1 cut(s) 541
HspAI GCGC 2 cut(s) 541, 560
KasI GGCGCC 1 cut(s) 540
LmnI GCTCC 2 cut(s) 1307, 2317
Lsp1109I GCAGC 5 cut(s) 569, 1007, 1363, 1385, 1513
LweI GCATC 4 cut(s) 380, 1792, 2224, 2246
MaeI CTAG 8 cut(s) 345, 413, 846, 1250, 1269, 1310, 1523, 1893
MaeII ACGT 3 cut(s) 669, 854, 864
MaeIII GTNAC 8 cut(s) 56, 64, 140, 451, 1049, 1064, 1139, 2428
MboII GAAGA 8 cut(s) 150, 178, 458, 517, 1432, 1492, 1495, 2152
MflI RGATCY 4 cut(s) 601, 805, 1246, 1915
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 2 cut(s) 531, 1619
MluNI TGGCCA 2 cut(s) 531, 1619
Mly113I GGCGCC 1 cut(s) 541
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 6 cut(s) 315, 783, 840, 1363, 1920, 2011
Mox20I TGGCCA 2 cut(s) 531, 1619
Mph1103I ATGCAT 1 cut(s) 2239
MscI TGGCCA 2 cut(s) 531, 1619
MseI TTAA 3 cut(s) 822, 1332, 1511
MslI CAYNNNNRTG 5 cut(s) 135, 256, 949, 955, 1290
Msp20I TGGCCA 2 cut(s) 531, 1619
MspA1I CMGCKG 2 cut(s) 1156, 1376
MspI CCGG 6 cut(s) 293, 423, 579, 1014, 1097, 2257
MspR9I CCNGG 8 cut(s) 123, 294, 498, 553, 579, 705, 799, 876
Mva1269I GAATGC 2 cut(s) 1154, 2149
MvaI CCWGG 6 cut(s) 123, 498, 553, 705, 799, 876
MwoI GCNNNNNNNGC 2 cut(s) 680, 835
NarI GGCGCC 1 cut(s) 541
NciI CCSGG 2 cut(s) 294, 579
NdeI CATATG 1 cut(s) 2349
NheI GCTAGC 1 cut(s) 1522
NlaIV GGNNCC 6 cut(s) 169, 542, 807, 910, 1303, 1349
NmuCI GTSAC 2 cut(s) 451, 1139
NsiI ATGCAT 1 cut(s) 2239
NspI RCATGY 4 cut(s) 1047, 1771, 2256, 2412
NspV TTCGAA 1 cut(s) 1843
PagI TCATGA 2 cut(s) 1657, 2263
PceI AGGCCT 1 cut(s) 623
PciI ACATGT 3 cut(s) 1043, 1767, 2408
PctI GAATGC 2 cut(s) 1154, 2149
PfeI GAWTC 6 cut(s) 228, 287, 394, 871, 2260, 2344
PkrI GCNGC 5 cut(s) 559, 1022, 1375, 1378, 1528
PleI GAGTC 1 cut(s) 1136
PluTI GGCGCC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 1136
PpuMI RGGWCCY 1 cut(s) 168
PscI ACATGT 3 cut(s) 1043, 1767, 2408
PsiI TTATAA 1 cut(s) 1587
Psp5II RGGWCCY 1 cut(s) 168
Psp6I CCWGG 6 cut(s) 121, 496, 551, 703, 797, 874
PspEI GGTNACC 1 cut(s) 140
PspGI CCWGG 6 cut(s) 121, 496, 551, 703, 797, 874
PspN4I GGNNCC 6 cut(s) 169, 542, 807, 910, 1303, 1349
PspPI GGNCC 6 cut(s) 168, 795, 908, 1011, 1347, 1577
PspPPI RGGWCCY 1 cut(s) 168
PstI CTGCAG 2 cut(s) 1375, 1381
PsuI RGATCY 4 cut(s) 601, 805, 1246, 1915
PvuII CAGCTG 1 cut(s) 1376
RsaI GTAC 7 cut(s) 100, 120, 612, 668, 1171, 1872, 1889
RsaNI GTAC 7 cut(s) 99, 119, 611, 667, 1170, 1871, 1888
RseI CAYNNNNRTG 5 cut(s) 135, 256, 949, 955, 1290
SaqAI TTAA 3 cut(s) 822, 1332, 1511
SatI GCNGC 5 cut(s) 558, 1021, 1374, 1377, 1527
Sau96I GGNCC 6 cut(s) 168, 795, 908, 1011, 1347, 1577
ScaI AGTACT 2 cut(s) 1872, 1889
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 8 cut(s) 123, 294, 498, 553, 579, 705, 799, 876
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 4 cut(s) 380, 1792, 2224, 2246
SfcI CTRYAG 2 cut(s) 1371, 1377
SfoI GGCGCC 1 cut(s) 542
SfuI TTCGAA 1 cut(s) 1843
SinI GGWCC 4 cut(s) 168, 908, 1011, 1347
SmiMI CAYNNNNRTG 5 cut(s) 135, 256, 949, 955, 1290
SmlI CTYRAG 2 cut(s) 1863, 2354
SmoI CTYRAG 2 cut(s) 1863, 2354
SpeI ACTAGT 1 cut(s) 1268
SseBI AGGCCT 1 cut(s) 623
SsiI CCGC 5 cut(s) 906, 998, 1156, 1345, 2133
SspDI GGCGCC 1 cut(s) 540
SspI AATATT 1 cut(s) 1210
SspMI CTAG 8 cut(s) 345, 413, 846, 1250, 1269, 1310, 1523, 1893
StuI AGGCCT 1 cut(s) 623
StyD4I CCNGG 8 cut(s) 121, 292, 496, 551, 577, 703, 797, 874
StyI CCWWGG 2 cut(s) 163, 217
TaaI ACNGT 4 cut(s) 32, 70, 693, 1163
TaiI ACGT 3 cut(s) 672, 857, 867
TaqI TCGA 5 cut(s) 471, 1777, 1843, 2323, 2476
TatI WGTACW 3 cut(s) 1169, 1870, 1887
TfiI GAWTC 6 cut(s) 228, 287, 394, 871, 2260, 2344
Tru1I TTAA 3 cut(s) 822, 1332, 1511
Tru9I TTAA 3 cut(s) 822, 1332, 1511
TscAI CASTG 5 cut(s) 35, 75, 142, 319, 772
TseFI GTSAC 2 cut(s) 451, 1139
TseI GCWGC 5 cut(s) 557, 1020, 1373, 1376, 1526
Tsp45I GTSAC 2 cut(s) 451, 1139
TspGWI ACGGA 4 cut(s) 364, 636, 1318, 2329
TspRI CASTG 5 cut(s) 35, 75, 142, 319, 772
VpaK11BI GGWCC 4 cut(s) 168, 908, 1011, 1347
XapI RAATTY 7 cut(s) 199, 841, 1593, 1790, 1986, 2167, 2416
XbaI TCTAGA 1 cut(s) 1892
XceI RCATGY 4 cut(s) 1047, 1771, 2256, 2412
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 8 cut(s) 345, 413, 846, 1250, 1269, 1310, 1523, 1893
ZrmI AGTACT 2 cut(s) 1872, 1889
Zsp2I ATGCAT 1 cut(s) 2239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.