Rroxscaffold_176G00431480

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
OG0000114
Physical Location & Seq
Forward (+)
1157021 .. 1160452
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431480.1

Sequence Viewer

Length: 984 bp
ATGTTAGTAGCTACTAATAACTTCTCTGAAGCGAATAAGCTAGGAGAGGGAGGATTCGGCCCTGTTTATAAGGGGATTTTGCCTGAAAATCAGGAAGTAGCCATAAAAAGGCTATCAAAGAAGTCAGGACAAGGACAACAGGAGTTCATGAATGAGTTAAAGCTTATAGCGAAGCTCCAACATACCAACCTTGTTAGACTCTTGGGTTGCTGCACTGAAGCAGAGGAAATGATGTTGATTTATGAGTACATGCCCAATCGAAGTTTGGACAAATTTCTGTTTGATCCATACGAAAAGACAAAATTGGACTGGGATAGACGTTTAAGAATTATAGAAGGTATAGCTCAAGGATTGCTTTATATACACAAGTACTCAAGATTAAAAATCATTCACAGGGATCTAAAAGCAAGTAATATTCTATTGGATGGAACATTGAACCCCAAGATTTCTGACTTTGGAATGGCAAAGATTTTTGACGTAAATCAAACTGAAGCAAATACCAACAGGGTTGTTGGGACCTACGGCTACATGTCACCTGAGTATGCACGTTATGGTCATTTCTCTGAGAAATCGGATGTCTTTAGTTTTGGAGTTTTGTTGTTGGAGATTGTAAGTGGACAGAAAAATGCTAGTTTCTATCGTTTTGAACGTTCACTGACTCTCGCTGGATGGGCATGGGACCTATGGAAAGAAGAAAGGGGAATAGAGGTGATTGATGCGTCAATAAGGGAAACATTACAGGCTCATGAGGCTTTAAGGTGTATCAATATAGGACTTTTGTGTGTTCAAGAATCTGCAGCTGATCGACCTGCAATGGCGTCAGTAATTCACATGTTGCAGGGAAATGAAGCTGCCTCTCTTCCACCTACCAAAGCACCTGCCTTTTCAACACAGACGAATTTCAGTACTATTGGTCCTTCTTCTCAAACACCTACCAATTATTCAAACAATGCACTCACGATTAGTTTGCCAGAAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

327

Amino Acids

36.76

Weight (kDa)

6.62

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 208 8.2e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 11 - 278 4.8e-53 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AarI CACCTGC 1 cut(s) 886
Acc36I ACCTGC 2 cut(s) 817, 886
AclI AACGTT 1 cut(s) 649
AclWI GGATC 2 cut(s) 278, 405
AcsI RAATTY 2 cut(s) 272, 898
AcuI CTGAAG 3 cut(s) 48, 237, 510
AcyI GRCGYC 1 cut(s) 818
AfaI GTAC 3 cut(s) 248, 371, 907
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 2 cut(s) 528, 831
AgsI TTSAA 5 cut(s) 436, 647, 788, 888, 945
AluBI AGCT 8 cut(s) 11, 40, 163, 175, 344, 800, 851, 977
AluI AGCT 8 cut(s) 11, 40, 163, 175, 344, 800, 851, 977
AlwI GGATC 2 cut(s) 278, 405
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 210, 797, 851
ApoI RAATTY 2 cut(s) 272, 898
AspS9I GGNCC 4 cut(s) 59, 516, 679, 914
AsuHPI GGTGA 2 cut(s) 525, 721
AvaII GGWCC 3 cut(s) 516, 679, 914
BbvI GCAGC 3 cut(s) 197, 809, 838
BccI CCATC 2 cut(s) 419, 663
BceAI ACGGC 1 cut(s) 538
BcgI CGANNNNNNTGC 2 cut(s) 949, 983
BfaI CTAG 2 cut(s) 41, 630
BfmI CTRYAG 1 cut(s) 795
BfuAI ACCTGC 2 cut(s) 817, 886
BisI GCNGC 3 cut(s) 211, 798, 852
BlsI GCNGC 3 cut(s) 212, 799, 853
BmcAI AGTACT 2 cut(s) 371, 907
Bme18I GGWCC 3 cut(s) 516, 679, 914
BmgT120I GGNCC 4 cut(s) 59, 516, 679, 914
BmiI GGNNCC 2 cut(s) 517, 680
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 706
BmuI ACTGGG 1 cut(s) 319
BpuEI CTTGAG 2 cut(s) 330, 358
BsaHI GRCGYC 1 cut(s) 818
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 819
BseGI GGATG 3 cut(s) 430, 580, 674
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 2 cut(s) 528, 555
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 197, 809, 838
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 1 cut(s) 60
BslFI GGGAC 2 cut(s) 529, 692
BslI CCNNNNNNNGG 1 cut(s) 108
BsmFI GGGAC 2 cut(s) 529, 692
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 3 cut(s) 283, 397, 802
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 529, 556
BspHI TCATGA 2 cut(s) 147, 745
BspLI GGNNCC 2 cut(s) 517, 680
BspMAI CTGCAG 1 cut(s) 799
BspMI ACCTGC 2 cut(s) 817, 886
BspPI GGATC 2 cut(s) 278, 405
BsrDI GCAATG 1 cut(s) 819
BsrI ACTGG 1 cut(s) 314
BssMI GATC 3 cut(s) 283, 397, 802
BssNI GRCGYC 1 cut(s) 818
Bst6I CTCTTC 1 cut(s) 864
BstACI GRCGYC 1 cut(s) 818
BstDEI CTNAG 2 cut(s) 537, 564
BstF5I GGATG 3 cut(s) 430, 580, 674
BstKTI GATC 3 cut(s) 286, 400, 805
BstMBI GATC 3 cut(s) 283, 397, 802
BstMWI GCNNNNNNNGC 2 cut(s) 671, 749
BstNSI RCATGY 3 cut(s) 253, 532, 835
BstSFI CTRYAG 1 cut(s) 795
BstV1I GCAGC 3 cut(s) 197, 809, 838
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 3 cut(s) 430, 580, 674
BtsIMutI CAGTG 2 cut(s) 213, 653
BveI ACCTGC 2 cut(s) 817, 886
CciI TCATGA 2 cut(s) 147, 745
Cfr13I GGNCC 4 cut(s) 59, 516, 679, 914
CseI GACGC 2 cut(s) 708, 807
Csp6I GTAC 3 cut(s) 247, 370, 906
CviAII CATG 6 cut(s) 148, 250, 529, 675, 746, 832
CviQI GTAC 3 cut(s) 247, 370, 906
DdeI CTNAG 2 cut(s) 537, 564
DpnI GATC 3 cut(s) 285, 399, 804
DpnII GATC 3 cut(s) 283, 397, 802
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco47I GGWCC 3 cut(s) 516, 679, 914
Eco57I CTGAAG 3 cut(s) 48, 237, 510
EcoO109I RGGNCCY 2 cut(s) 516, 679
FaeI CATG 6 cut(s) 151, 253, 532, 678, 749, 835
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 2 cut(s) 529, 692
FatI CATG 6 cut(s) 147, 249, 528, 674, 745, 831
Fnu4HI GCNGC 3 cut(s) 211, 798, 852
FokI GGATG 3 cut(s) 437, 587, 681
Fsp4HI GCNGC 3 cut(s) 211, 798, 852
FspBI CTAG 2 cut(s) 41, 630
GluI GCNGC 3 cut(s) 211, 798, 852
HaeIII GGCC 1 cut(s) 60
HgaI GACGC 2 cut(s) 708, 807
Hin1I GRCGYC 1 cut(s) 818
Hin1II CATG 6 cut(s) 151, 253, 532, 678, 749, 835
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 4 cut(s) 54, 198, 658, 791
HphI GGTGA 2 cut(s) 525, 721
Hpy166II GTNNAC 2 cut(s) 617, 653
Hpy188I TCNGA 4 cut(s) 28, 451, 565, 574
Hpy188III TCNNGA 7 cut(s) 92, 126, 148, 375, 746, 788, 958
Hpy8I GTNNAC 2 cut(s) 617, 653
HpyAV CCTTC 2 cut(s) 329, 927
HpyCH4IV ACGT 4 cut(s) 319, 477, 547, 649
HpyCH4V TGCA 6 cut(s) 213, 545, 797, 812, 838, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 671, 749
HpyF3I CTNAG 2 cut(s) 537, 564
HpySE526I ACGT 4 cut(s) 319, 477, 547, 649
Hsp92I GRCGYC 1 cut(s) 818
Hsp92II CATG 6 cut(s) 151, 253, 532, 678, 749, 835
Kzo9I GATC 3 cut(s) 283, 397, 802
LmnI GCTCC 1 cut(s) 180
Lsp1109I GCAGC 3 cut(s) 197, 809, 838
LweI GCATC 1 cut(s) 706
MaeI CTAG 2 cut(s) 41, 630
MaeII ACGT 4 cut(s) 319, 477, 547, 649
MaeIII GTNAC 1 cut(s) 531
MalI GATC 3 cut(s) 285, 399, 804
MboI GATC 3 cut(s) 283, 397, 802
MboII GAAGA 3 cut(s) 704, 851, 912
MflI RGATCY 1 cut(s) 397
MluCI AATT 6 cut(s) 272, 302, 327, 825, 898, 937
MlyI GAGTC 2 cut(s) 192, 652
MmeI TCCRAC 2 cut(s) 202, 582
MnlI CCTC 6 cut(s) 40, 44, 217, 700, 742, 865
MseI TTAA 4 cut(s) 158, 323, 380, 755
MspA1I CMGCKG 1 cut(s) 800
MwoI GCNNNNNNNGC 2 cut(s) 671, 749
NdeII GATC 3 cut(s) 283, 397, 802
NlaIII CATG 6 cut(s) 151, 253, 532, 678, 749, 835
NlaIV GGNNCC 2 cut(s) 517, 680
NmuCI GTSAC 1 cut(s) 531
NspI RCATGY 3 cut(s) 253, 532, 835
PagI TCATGA 2 cut(s) 147, 745
PaqCI CACCTGC 1 cut(s) 886
PciI ACATGT 2 cut(s) 528, 831
PcsI WCGNNNNNNNCGW 1 cut(s) 646
PfeI GAWTC 2 cut(s) 54, 791
PkrI GCNGC 3 cut(s) 212, 799, 853
PleI GAGTC 2 cut(s) 192, 652
PpsI GAGTC 2 cut(s) 192, 652
PpuMI RGGWCCY 2 cut(s) 516, 679
PscI ACATGT 2 cut(s) 528, 831
PsiI TTATAA 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 649
Psp5II RGGWCCY 2 cut(s) 516, 679
PspN4I GGNNCC 2 cut(s) 517, 680
PspPI GGNCC 4 cut(s) 59, 516, 679, 914
PspPPI RGGWCCY 2 cut(s) 516, 679
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 1 cut(s) 397
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 3 cut(s) 248, 371, 907
RsaNI GTAC 3 cut(s) 247, 370, 906
SaqAI TTAA 4 cut(s) 158, 323, 380, 755
SatI GCNGC 3 cut(s) 211, 798, 852
Sau3AI GATC 3 cut(s) 283, 397, 802
Sau96I GGNCC 4 cut(s) 59, 516, 679, 914
ScaI AGTACT 2 cut(s) 371, 907
SchI GAGTC 2 cut(s) 192, 652
SfaNI GCATC 1 cut(s) 706
SfcI CTRYAG 1 cut(s) 795
SinI GGWCC 3 cut(s) 516, 679, 914
SmlI CTYRAG 2 cut(s) 345, 373
SmoI CTYRAG 2 cut(s) 345, 373
Sse9I AATT 6 cut(s) 272, 302, 327, 825, 898, 937
SspI AATATT 1 cut(s) 415
SspMI CTAG 2 cut(s) 41, 630
TaiI ACGT 4 cut(s) 322, 480, 550, 652
TaqI TCGA 3 cut(s) 259, 805, 979
TasI AATT 6 cut(s) 272, 302, 327, 825, 898, 937
TatI WGTACW 3 cut(s) 246, 369, 905
TfiI GAWTC 2 cut(s) 54, 791
Tru1I TTAA 4 cut(s) 158, 323, 380, 755
Tru9I TTAA 4 cut(s) 158, 323, 380, 755
TscAI CASTG 2 cut(s) 220, 660
TseFI GTSAC 1 cut(s) 531
TseI GCWGC 3 cut(s) 210, 797, 851
Tsp45I GTSAC 1 cut(s) 531
TspDTI ATGAA 3 cut(s) 136, 164, 861
TspRI CASTG 2 cut(s) 220, 660
VpaK11BI GGWCC 3 cut(s) 516, 679, 914
XapI RAATTY 2 cut(s) 272, 898
XceI RCATGY 3 cut(s) 253, 532, 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XspI CTAG 2 cut(s) 41, 630
ZrmI AGTACT 2 cut(s) 371, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.