RchiOBHm_Chr2g0161431

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000114
Physical Location & Seq
Forward (+)
77343924 .. 77347084
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52978

Sequence Viewer

Length: 2229 bp
ATGGAGTGGCTCTTCCCTTACCTTGTTCTGCTTCCCTCTCTGATCTTTTCATTCTGTACCAGCCAAGACAACTTAGTACCGGGGAAATCTATCAGTGCAAACCAGACCTTGATTTCTTCCAATGGGACCTTTGCCTTAGGCTTCTTCAGACCTGAAAATTCAACTAAATACTTCCTTGGTATATGGTACGACAAACTCCCAAAGTTGACAGTAGTTTGGGTTGCTAACAGAGAATCCCCGCTTGATTCTCCGGGTGTTTTTACACTTCGTACTGATGGAAATCTTGTGGTGTTGTTAGACGTCGAAGCGAGCGCTCCAGTCTGGTCAACTAATTTAGTATTGGATGCTGCAAAGAATGGCACAACTGGTTTACTAACGGATACTGGAAACTTTGTTCTGAGATCTGGGGAAGAAACTTTGTGGGAGAGCTTCGATCATCCCTCTGATACAATTCTGCCTGGCATGAAGATTAGCTTGAACAAACTGACTGGCCAACAAAGCTGCCTCACATCCTGGGCAACGCTTGATGATCCACGACCAGGAAAGTTCACCTTATGCATTGATCCTAAAGGGCTGCAGGCTTATATCTGGGAGGACAATAGTATTCAAAAATGGAGAATTGCTATGTACATTGGCAGAGACTCAAGAAGTGTCTTTGGAAATCCAGGTGGATCAGCCTTTTCCCTATCATACAACTTCGATGTTGATAAGGCTTATCTTACTTACAGTGTCTCGAATAGCTCACTGAAAATGAGGGTCTTGTTGAATCCTTCAGGGCAGATTGAGCTGCTGCTGTGGATCAGTAAAACTTGGTATCAACTGTGGAAGGCACCTGCTGATAACTGTGATTTTTATGATCGTTGCGGTCCATATGGTGCCTGTCGTAAAAATGAAAGCCTCTCATCACCGTGCAAGTGCTTGACAGGTTTTAAAGCCAAATTTTCAAACCAATGGGATATGCAGGATTGGTCCAGTGGCTGCGTTAGGGAAAAAGCATTGACATGTAGTAACGCAATGGAAGGGTACTTCTCAAAGTTAGAAGGGGTGAAACTACCAGATCATTCTGTTATTTTTGAGGATAGGAGTAAGGATGAGTGCAACTCCGAATGTCATCAGAGTTGTTCTTGCACGGCTTATGCTTATGTAAATGCGACGGAAGGAAGTAATACTGGGACGTGTATGCAATGGTTTAGTGACTTAATCGATCTAGTAGAGAATTATGATATTATTACTACACATGATATTTTCATTCGCGTTCATGACTCCAAACTAGGGAGGATAGCAGGAAGAATGAGTGAGATTATAAGAAATGTTGGTGCAGGAGGTGGGAAAAATGATACAGAAATACCACTCTTCGGTTTAGGTAGTATATTAGCTGCTACAAACAACTTCTCTGAAGCAAATAAGCTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGAATTTTGCCAGAAAATCAAGAAGTGGCTGTAAAGAGGCTATCAAAGAAGTCTCGGCAAGGACATCATGAGTTCATGAATGAGTTGAAGCTTATAGCCAAACTCCAGCATACAAATCTTGTTAGGCTCTTGGGTTGCTGTATGGAACAAGAGGAAATGATATTGATCTATGAGTACATGCCTAATCGAAGTTTGGACAAGTTTTTGTTTGACTCATCTGAGAAGACAAACTTGGACTGGGTTACACGCTTTCGAATCATAGAGGGTGTTGCTCAAGGGGTACTTTATATCCACAAATACTCTAGATTGAAAATTATTCACAGGGATCTAAAAGCAAGTAATGTGTTCGGCTACATGTCACCTGAGTATGCACTTTATGGCTATATCTCTGAGAAATTGGATGTATATAGTTTTGGGGTATTGTTGTTAGAGATTGTAAGTGGAAAGAGAAATGCTTCTTTTTATCATTTTGAAAATTCATTAACGCTTGCTCGATGGGTATGGGAACTGTGGAAAGAAGGCAGAGCAGTGGAGGTGATTGACACATCAGTAAGGCATACTTGCCGGACTCATGAAGCTTTGAGGTGTATCCATGTGGGGCTTTTGTGTGTTCAAGAAACTCCAGCTGATCGACCAACAATGTCATCCGTGATTCATATGCTTGAGGCCCATGAAGCTACTTCAATTCCACCCTCCAAAGAACCTGCTTTTTCAACATTTAAGAATGCAACTCCTGTTACCATTTATTCCAACAATGCAGTCACTATTACTTTGCCAGAGGCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

742

Amino Acids

83.37

Weight (kDa)

6.11

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 70 - 172 1.5e-28 D-mannose binding lectin
S_locus_glycop PF00954 233 - 313 8e-20 S-locus glycoprotein domain
PAN_2 PF08276 340 - 403 3.1e-13 PAN-like domain
Pkinase PF00069 465 - 596 1.1e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 467 - 596 2.3e-28 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 598 - 700 1.1e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1304, 1437
AarI CACCTGC 1 cut(s) 841
AatII GACGTC 1 cut(s) 303
Acc36I ACCTGC 2 cut(s) 841, 2152
AccB1I GGYRCC 2 cut(s) 829, 875
AccII CGCG 1 cut(s) 1254
AciI CCGC 2 cut(s) 239, 864
AclWI GGATC 5 cut(s) 524, 557, 679, 806, 1773
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 4 cut(s) 157, 938, 1443, 1915
AcuI CTGAAG 3 cut(s) 130, 756, 1416
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 8 cut(s) 58, 78, 188, 271, 629, 1025, 1616, 1722
AfeI AGCGCT 1 cut(s) 313
AfiI CCNNNNNNNGG 3 cut(s) 539, 1272, 1355
AflIII ACRYGT 3 cut(s) 1001, 1175, 1794
AjiI CACGTC 1 cut(s) 1176
AjnI CCWGG 4 cut(s) 457, 512, 538, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 1655, 1687
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
Alw26I GTCTC 3 cut(s) 633, 736, 1497
AlwI GGATC 5 cut(s) 524, 557, 679, 806, 1773
AlwNI CAGNNNCTG 1 cut(s) 978
Aor51HI AGCGCT 1 cut(s) 313
AoxI GGCC 3 cut(s) 490, 1426, 2106
ApeKI GCWGC 7 cut(s) 347, 501, 574, 787, 790, 978, 1376
ApoI RAATTY 4 cut(s) 157, 938, 1443, 1915
Asp700I GAANNNNTTC 1 cut(s) 1894
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 5 cut(s) 126, 866, 969, 1427, 2107
AsuC2I CCSGG 2 cut(s) 81, 252
AsuHPI GGTGA 5 cut(s) 541, 897, 1057, 1791, 1987
AsuII TTCGAA 1 cut(s) 1693
AvaII GGWCC 3 cut(s) 126, 866, 969
AxyI CCTNAGG 1 cut(s) 136
BalI TGGCCA 1 cut(s) 492
BanI GGYRCC 2 cut(s) 829, 875
BbsI GAAGAC 1 cut(s) 1670
BbvI GCAGC 7 cut(s) 334, 488, 561, 774, 777, 965, 1363
BccI CCATC 2 cut(s) 269, 1929
BceAI ACGGC 1 cut(s) 1146
BciT130I CCWGG 4 cut(s) 459, 514, 540, 666
BciVI GTATCC 2 cut(s) 373, 2039
BcnI CCSGG 2 cut(s) 81, 252
BcoDI GTCTC 3 cut(s) 633, 736, 1497
BfaI CTAG 3 cut(s) 1208, 1271, 1743
BfmI CTRYAG 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 315
BfuAI ACCTGC 2 cut(s) 841, 2152
BfuI GTATCC 2 cut(s) 373, 2039
BglII AGATCT 1 cut(s) 401
BisI GCNGC 7 cut(s) 348, 502, 575, 788, 791, 979, 1377
BlsI GCNGC 7 cut(s) 349, 503, 576, 789, 792, 980, 1378
Bme1390I CCNGG 6 cut(s) 81, 252, 459, 514, 540, 666
Bme18I GGWCC 3 cut(s) 126, 866, 969
BmgBI CACGTC 1 cut(s) 1176
BmgT120I GGNCC 5 cut(s) 126, 866, 969, 1427, 2107
BmiI GGNNCC 3 cut(s) 127, 831, 877
BmrFI CCNGG 6 cut(s) 81, 252, 459, 514, 540, 666
BmrI ACTGGG 2 cut(s) 1179, 1687
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 2 cut(s) 1179, 1687
BpiI GAAGAC 1 cut(s) 1670
BplI GAGNNNNNCTC 2 cut(s) 1085, 1117
BpmI CTGGAG 3 cut(s) 300, 1529, 2046
Bpu14I TTCGAA 1 cut(s) 1693
BpuEI CTTGAG 3 cut(s) 628, 1698, 2123
BpuMI CCSGG 2 cut(s) 81, 252
Bsa29I ATCGAT 1 cut(s) 1203
BsaBI GATNNNNATC 2 cut(s) 279, 1604
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 80, 175, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 539, 1272, 1355
Bse1I ACTGG 7 cut(s) 317, 370, 388, 493, 972, 1174, 1682
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 1020, 1190
Bse8I GATNNNNATC 2 cut(s) 279, 1604
BseBI CCWGG 4 cut(s) 459, 514, 540, 666
BseCI ATCGAT 1 cut(s) 1203
BseDI CCNNGG 3 cut(s) 80, 175, 513
BseGI GGATG 6 cut(s) 349, 436, 509, 1096, 1846, 2084
BseJI GATNNNNATC 2 cut(s) 279, 1604
BseLI CCNNNNNNNGG 3 cut(s) 539, 1272, 1355
BseMI GCAATG 2 cut(s) 1020, 1190
BseMII CTCAG 4 cut(s) 389, 1650, 1794, 1821
BseNI ACTGG 7 cut(s) 317, 370, 388, 493, 972, 1174, 1682
BseXI GCAGC 7 cut(s) 334, 488, 561, 774, 777, 965, 1363
BsgI GTGCAG 1 cut(s) 1338
Bsh1236I CGCG 1 cut(s) 1254
BshFI GGCC 3 cut(s) 492, 1428, 2108
BshNI GGYRCC 2 cut(s) 829, 875
BshVI ATCGAT 1 cut(s) 1203
BsiSI CCGG 3 cut(s) 80, 251, 2005
BslFI GGGAC 2 cut(s) 139, 1186
BslI CCNNNNNNNGG 3 cut(s) 539, 1272, 1355
BsmAI GTCTC 3 cut(s) 633, 736, 1497
BsmFI GGGAC 2 cut(s) 139, 1186
BsmI GAATGC 1 cut(s) 2170
BsnI GGCC 3 cut(s) 492, 1428, 2108
Bsp119I TTCGAA 1 cut(s) 1693
Bsp1407I TGTACA 1 cut(s) 627
BspACI CCGC 2 cut(s) 239, 864
BspANI GGCC 3 cut(s) 492, 1428, 2108
BspCNI CTCAG 4 cut(s) 390, 1651, 1795, 1822
BspDI ATCGAT 1 cut(s) 1203
BspFNI CGCG 1 cut(s) 1254
BspHI TCATGA 4 cut(s) 1258, 1507, 1515, 2011
BspLI GGNNCC 3 cut(s) 127, 831, 877
BspMAI CTGCAG 1 cut(s) 579
BspMI ACCTGC 2 cut(s) 841, 2152
BspPI GGATC 5 cut(s) 524, 557, 679, 806, 1773
BspQI GCTCTTC 1 cut(s) 17
BspT104I TTCGAA 1 cut(s) 1693
BspT107I GGYRCC 2 cut(s) 829, 875
BsrDI GCAATG 2 cut(s) 1020, 1190
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 7 cut(s) 317, 370, 388, 493, 972, 1174, 1682
BssECI CCNNGG 3 cut(s) 80, 175, 513
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 4 cut(s) 459, 514, 540, 666
Bst4CI ACNGT 6 cut(s) 211, 728, 822, 845, 909, 1950
Bst6I CTCTTC 2 cut(s) 17, 1358
BstACI GRCGYC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 1693
BstC8I GCNNGC 3 cut(s) 310, 579, 1929
BstDEI CTNAG 6 cut(s) 73, 136, 398, 1659, 1803, 1830
BstF5I GGATG 6 cut(s) 349, 436, 509, 1096, 1846, 2084
BstFNI CGCG 1 cut(s) 1254
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstMAI GTCTC 3 cut(s) 633, 736, 1497
BstMWI GCNNNNNNNGC 3 cut(s) 498, 784, 2114
BstNI CCWGG 4 cut(s) 459, 514, 540, 666
BstNSI RCATGY 3 cut(s) 1005, 1621, 1798
BstSCI CCNGG 6 cut(s) 79, 250, 457, 512, 538, 664
BstSFI CTRYAG 1 cut(s) 575
BstUI CGCG 1 cut(s) 1254
BstV1I GCAGC 7 cut(s) 334, 488, 561, 774, 777, 965, 1363
BstV2I GAAGAC 1 cut(s) 1670
BstX2I RGATCY 2 cut(s) 401, 1765
BstYI RGATCY 2 cut(s) 401, 1765
Bsu15I ATCGAT 1 cut(s) 1203
Bsu36I CCTNAGG 1 cut(s) 136
BsuI GTATCC 2 cut(s) 373, 2039
BsuRI GGCC 3 cut(s) 492, 1428, 2108
BsuTUI ATCGAT 1 cut(s) 1203
BtrI CACGTC 1 cut(s) 1176
BtsCI GGATG 6 cut(s) 349, 436, 509, 1096, 1846, 2084
BtsI GCAGTG 1 cut(s) 1974
BtsIMutI CAGTG 5 cut(s) 100, 733, 743, 979, 1974
BveI ACCTGC 2 cut(s) 841, 2152
Cac8I GCNNGC 3 cut(s) 310, 579, 1929
CaiI CAGNNNCTG 1 cut(s) 978
CciI TCATGA 4 cut(s) 1258, 1507, 1515, 2011
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 5 cut(s) 126, 866, 969, 1427, 2107
ClaI ATCGAT 1 cut(s) 1203
Csp6I GTAC 8 cut(s) 57, 77, 187, 270, 628, 1024, 1615, 1721
CviQI GTAC 8 cut(s) 57, 77, 187, 270, 628, 1024, 1615, 1721
DdeI CTNAG 6 cut(s) 73, 136, 398, 1659, 1803, 1830
DraI TTTAAA 1 cut(s) 931
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 17, 1358
EarI CTCTTC 2 cut(s) 17, 1358
Eco130I CCWWGG 1 cut(s) 175
Eco47I GGWCC 3 cut(s) 126, 866, 969
Eco47III AGCGCT 1 cut(s) 313
Eco57I CTGAAG 3 cut(s) 130, 756, 1416
Eco81I CCTNAGG 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 126
EcoRII CCWGG 4 cut(s) 457, 512, 538, 664
EcoT14I CCWWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 175
FaqI GGGAC 2 cut(s) 139, 1186
FauI CCCGC 1 cut(s) 246
FauNDI CATATG 2 cut(s) 871, 2097
Fnu4HI GCNGC 7 cut(s) 348, 502, 575, 788, 791, 979, 1377
FokI GGATG 6 cut(s) 356, 423, 496, 1103, 1853, 2071
Fsp4HI GCNGC 7 cut(s) 348, 502, 575, 788, 791, 979, 1377
FspBI CTAG 3 cut(s) 1208, 1271, 1743
GlaI GCGC 1 cut(s) 313
GluI GCNGC 7 cut(s) 348, 502, 575, 788, 791, 979, 1377
GsuI CTGGAG 3 cut(s) 300, 1529, 2046
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 3 cut(s) 492, 1428, 2108
HapII CCGG 3 cut(s) 80, 251, 2005
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 300
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HincII GTYRAC 2 cut(s) 207, 327
HindII GTYRAC 2 cut(s) 207, 327
HindIII AAGCTT 3 cut(s) 1406, 1529, 2016
HinfI GANTC 9 cut(s) 233, 245, 641, 766, 1262, 1652, 1695, 2008, 2092
HpaII CCGG 3 cut(s) 80, 251, 2005
HphI GGTGA 5 cut(s) 541, 897, 1057, 1791, 1987
Hpy166II GTNNAC 4 cut(s) 207, 327, 371, 549
Hpy188I TCNGA 9 cut(s) 42, 149, 399, 445, 1105, 1116, 1396, 1660, 1831
Hpy188III TCNNGA 9 cut(s) 645, 733, 1259, 1460, 1508, 1516, 1743, 2012, 2054
Hpy8I GTNNAC 4 cut(s) 207, 327, 371, 549
Hpy99I CGWCG 2 cut(s) 305, 1156
HpyAV CCTTC 6 cut(s) 780, 820, 1013, 1034, 1151, 1952
HpyCH4III ACNGT 6 cut(s) 211, 728, 822, 845, 909, 1950
HpyCH4IV ACGT 2 cut(s) 300, 1175
HpyF10VI GCNNNNNNNGC 3 cut(s) 498, 784, 2114
HpyF3I CTNAG 6 cut(s) 73, 136, 398, 1659, 1803, 1830
HpySE526I ACGT 2 cut(s) 300, 1175
Hsp92I GRCGYC 1 cut(s) 300
HspAI GCGC 1 cut(s) 312
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 7 cut(s) 334, 488, 561, 774, 777, 965, 1363
LweI GCATC 1 cut(s) 334
MaeI CTAG 3 cut(s) 1208, 1271, 1743
MaeII ACGT 2 cut(s) 300, 1175
MaeIII GTNAC 6 cut(s) 1007, 1193, 1681, 1797, 2176, 2200
MboII GAAGA 8 cut(s) 4, 108, 136, 422, 478, 1299, 1345, 1675
MflI RGATCY 2 cut(s) 401, 1765
MlsI TGGCCA 1 cut(s) 492
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 4 cut(s) 635, 1256, 1646, 2002
MmeI TCCRAC 1 cut(s) 2214
Mox20I TGGCCA 1 cut(s) 492
Mph1103I ATGCAT 1 cut(s) 560
MroXI GAANNNNTTC 1 cut(s) 1894
MscI TGGCCA 1 cut(s) 492
MseI TTAA 4 cut(s) 930, 1199, 1922, 2160
MslI CAYNNNNRTG 2 cut(s) 907, 1000
Msp20I TGGCCA 1 cut(s) 492
MspA1I CMGCKG 1 cut(s) 2066
MspI CCGG 3 cut(s) 80, 251, 2005
MspR9I CCNGG 6 cut(s) 81, 252, 459, 514, 540, 666
Mva1269I GAATGC 1 cut(s) 2170
MvaI CCWGG 4 cut(s) 459, 514, 540, 666
MvnI CGCG 1 cut(s) 1254
MwoI GCNNNNNNNGC 3 cut(s) 498, 784, 2114
NciI CCSGG 2 cut(s) 81, 252
NdeI CATATG 2 cut(s) 871, 2097
NlaIV GGNNCC 3 cut(s) 127, 831, 877
NmeAIII GCCGAG 1 cut(s) 1474
NmuCI GTSAC 3 cut(s) 1193, 1797, 2200
NsiI ATGCAT 1 cut(s) 560
NspI RCATGY 3 cut(s) 1005, 1621, 1798
NspV TTCGAA 1 cut(s) 1693
PagI TCATGA 4 cut(s) 1258, 1507, 1515, 2011
PaqCI CACCTGC 1 cut(s) 841
PciI ACATGT 2 cut(s) 1001, 1794
PciSI GCTCTTC 1 cut(s) 17
PctI GAATGC 1 cut(s) 2170
PdmI GAANNNNTTC 1 cut(s) 1894
PfeI GAWTC 5 cut(s) 233, 245, 766, 1695, 2092
PkrI GCNGC 7 cut(s) 349, 503, 576, 789, 792, 980, 1378
PleI GAGTC 4 cut(s) 635, 1256, 1646, 2002
PpsI GAGTC 4 cut(s) 635, 1256, 1646, 2002
PpuMI RGGWCCY 1 cut(s) 126
PscI ACATGT 2 cut(s) 1001, 1794
PsiI TTATAA 2 cut(s) 1304, 1437
Psp5II RGGWCCY 1 cut(s) 126
Psp6I CCWGG 4 cut(s) 457, 512, 538, 664
PspGI CCWGG 4 cut(s) 457, 512, 538, 664
PspN4I GGNNCC 3 cut(s) 127, 831, 877
PspPI GGNCC 5 cut(s) 126, 866, 969, 1427, 2107
PspPPI RGGWCCY 1 cut(s) 126
PstI CTGCAG 1 cut(s) 579
PstNI CAGNNNCTG 1 cut(s) 978
PsuI RGATCY 2 cut(s) 401, 1765
PvuII CAGCTG 1 cut(s) 2066
RsaI GTAC 8 cut(s) 58, 78, 188, 271, 629, 1025, 1616, 1722
RsaNI GTAC 8 cut(s) 57, 77, 187, 270, 628, 1024, 1615, 1721
RseI CAYNNNNRTG 2 cut(s) 907, 1000
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 4 cut(s) 930, 1199, 1922, 2160
SatI GCNGC 7 cut(s) 348, 502, 575, 788, 791, 979, 1377
Sau96I GGNCC 5 cut(s) 126, 866, 969, 1427, 2107
SchI GAGTC 4 cut(s) 635, 1256, 1646, 2002
ScrFI CCNGG 6 cut(s) 81, 252, 459, 514, 540, 666
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 575
SfuI TTCGAA 1 cut(s) 1693
SinI GGWCC 3 cut(s) 126, 866, 969
SmiMI CAYNNNNRTG 2 cut(s) 907, 1000
SmlI CTYRAG 3 cut(s) 643, 1713, 2102
SmoI CTYRAG 3 cut(s) 643, 1713, 2102
SsiI CCGC 2 cut(s) 239, 864
SspMI CTAG 3 cut(s) 1208, 1271, 1743
StyD4I CCNGG 6 cut(s) 79, 250, 457, 512, 538, 664
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 6 cut(s) 211, 728, 822, 845, 909, 1950
TaiI ACGT 2 cut(s) 303, 1178
TatI WGTACW 2 cut(s) 627, 1614
TfiI GAWTC 5 cut(s) 233, 245, 766, 1695, 2092
Tru1I TTAA 4 cut(s) 930, 1199, 1922, 2160
Tru9I TTAA 4 cut(s) 930, 1199, 1922, 2160
TscAI CASTG 5 cut(s) 100, 733, 750, 979, 1974
TseFI GTSAC 3 cut(s) 1193, 1797, 2200
TseI GCWGC 7 cut(s) 347, 501, 574, 787, 790, 978, 1376
Tsp45I GTSAC 3 cut(s) 1193, 1797, 2200
TspGWI ACGGA 3 cut(s) 392, 1169, 2077
TspRI CASTG 5 cut(s) 100, 733, 750, 979, 1974
VpaK11BI GGWCC 3 cut(s) 126, 866, 969
XapI RAATTY 4 cut(s) 157, 938, 1443, 1915
XbaI TCTAGA 1 cut(s) 1742
XceI RCATGY 3 cut(s) 1005, 1621, 1798
XmnI GAANNNNTTC 1 cut(s) 1894
XspI CTAG 3 cut(s) 1208, 1271, 1743
ZraI GACGTC 1 cut(s) 301
Zsp2I ATGCAT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.