pycom06g12740

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
17818086 .. 17818947
862 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12740.1

Sequence Viewer

Length: 810 bp
ATGCATACCCTTCAGTTTTTGCTTCCTTTCGTTTTGCTCACTTCCTTTATTTCAATCAACTTTGAGTTATGTCTATGTGCAGATAATGAAGCATACTCTAACTGCAGCGAAGCCATCAGCTGCGGAGGCATCTGGTCAGACGTCGTGAATTCGTTTTGGGGTGTAAACAGACCCTATTACTGTGGTAAACCTAGGTTTGAGGTCCAATGCCTAGATAGCGTTCCCGTGTGCAGCATGTGGAATATCGACTACAGAATTCTCGAAATGAATTCAAATAGTAGTCCTTGGACTATTACAATTGCTGGGCAGGACTTTTGGCAAACTATCTGTCCTCCCACTTTTGTTTCCACCAACATCAACTTCTCTCTGTTTGATTATGCTTCCGGGCTTGAAGACACTTTTGTTTCCACCAACATCAACTTCTCTCTGTTTGATTATGCTTCCGGGCTTGAAGACGTGACCTTTTTACTACGTATGCAGTACAAATACAGGAGTGGAATCACTAATTCAAATACGACCATCCACGGCGATCGCGGATTTGATACTAATACGTACGTCACAAGAAATCCCGGATTTGATCCAGTTGCGATTGGCCTATGTACGTACAGGGTCAATGTTCGGGTTTTTACAACAGCTGTTCTTGCTCTAGAGTCCAATCGAACGACTATCCAAGGCGCGATGGATGGGGGTTTTGAATTGGAGATTAAGATTGATGATGGTCAATTCAACAGTTGTGAGGTATCAGGAGGAATGTGCGGGCTTAACACTACTAGTGGTGGATTCATTACAAAAAAAAAAAAAAAAAAATGA

Protein Analysis

270

Amino Acids

30.05

Weight (kDa)

4.86

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 35 - 100 1.8e-07 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 197 - 261 1.2e-07 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccII CGCG 2 cut(s) 534, 677
AciI CCGC 3 cut(s) 123, 534, 756
AclWI GGATC 1 cut(s) 572
AcsI RAATTY 3 cut(s) 148, 255, 268
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 4 cut(s) 482, 554, 601, 605
AgsI TTSAA 7 cut(s) 54, 273, 392, 452, 510, 695, 727
AhlI ACTAGT 1 cut(s) 770
AjiI CACGTC 1 cut(s) 457
AjuI GAANNNNNNNTTGG 4 cut(s) 344, 376, 404, 436
AluBI AGCT 2 cut(s) 120, 635
AluI AGCT 2 cut(s) 120, 635
AlwI GGATC 1 cut(s) 572
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 105, 120, 231
ApoI RAATTY 3 cut(s) 148, 255, 268
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
AsiSI GCGATCGC 1 cut(s) 532
AspA2I CCTAGG 1 cut(s) 191
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 3 cut(s) 385, 445, 570
AvaII GGWCC 1 cut(s) 202
AvrII CCTAGG 1 cut(s) 191
BbsI GAAGAC 2 cut(s) 399, 459
BbvI GCAGC 3 cut(s) 107, 117, 243
BccI CCATC 5 cut(s) 122, 527, 673, 677, 710
BceAI ACGGC 1 cut(s) 541
BcnI CCSGG 3 cut(s) 385, 445, 570
BcuI ACTAGT 1 cut(s) 770
BfaI CTAG 4 cut(s) 192, 212, 647, 771
BfmI CTRYAG 2 cut(s) 103, 250
BisI GCNGC 3 cut(s) 106, 121, 232
BlnI CCTAGG 1 cut(s) 191
BlsI GCNGC 3 cut(s) 107, 122, 233
Bme1390I CCNGG 3 cut(s) 385, 445, 570
Bme18I GGWCC 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 202
BmrFI CCNGG 3 cut(s) 385, 445, 570
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 2 cut(s) 399, 459
BpuMI CCSGG 3 cut(s) 385, 445, 570
BsaAI YACGTR 3 cut(s) 473, 552, 603
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 4 cut(s) 191, 284, 523, 670
Bse1I ACTGG 1 cut(s) 581
BseDI CCNNGG 4 cut(s) 191, 284, 523, 670
BseGI GGATG 2 cut(s) 519, 688
BseNI ACTGG 1 cut(s) 581
BseXI GCAGC 3 cut(s) 107, 117, 243
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 2 cut(s) 99, 250
Bsh1236I CGCG 2 cut(s) 534, 677
Bsh1285I CGRYCG 1 cut(s) 532
BshFI GGCC 1 cut(s) 594
BsiEI CGRYCG 1 cut(s) 532
BsiSI CCGG 3 cut(s) 384, 444, 570
BsiWI CGTACG 1 cut(s) 552
BsnI GGCC 1 cut(s) 594
Bsp143I GATC 2 cut(s) 529, 577
BspACI CCGC 3 cut(s) 123, 534, 756
BspANI GGCC 1 cut(s) 594
BspFNI CGCG 2 cut(s) 534, 677
BspMAI CTGCAG 1 cut(s) 107
BspPI GGATC 1 cut(s) 572
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 4 cut(s) 191, 284, 523, 670
BssMI GATC 2 cut(s) 529, 577
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 3 cut(s) 191, 284, 670
Bst4CI ACNGT 2 cut(s) 182, 731
BstACI GRCGYC 1 cut(s) 141
BstBAI YACGTR 3 cut(s) 473, 552, 603
BstC8I GCNNGC 1 cut(s) 758
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 2 cut(s) 519, 688
BstFNI CGCG 2 cut(s) 534, 677
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 2 cut(s) 532, 580
BstMBI GATC 2 cut(s) 529, 577
BstMCI CGRYCG 1 cut(s) 532
BstMWI GCNNNNNNNGC 3 cut(s) 126, 216, 641
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 3 cut(s) 383, 443, 568
BstSFI CTRYAG 2 cut(s) 103, 250
BstSNI TACGTA 3 cut(s) 473, 552, 603
BstUI CGCG 2 cut(s) 534, 677
BstV1I GCAGC 3 cut(s) 107, 117, 243
BstV2I GAAGAC 2 cut(s) 399, 459
BsuRI GGCC 1 cut(s) 594
BtgI CCRYGG 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 692
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 2 cut(s) 519, 688
Cac8I GCNNGC 1 cut(s) 758
CfoI GCGC 1 cut(s) 677
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 4 cut(s) 481, 553, 600, 604
CviAII CATG 1 cut(s) 235
CviJI RGCY 7 cut(s) 113, 120, 388, 448, 594, 635, 760
CviKI_1 RGCY 7 cut(s) 113, 120, 388, 448, 594, 635, 760
CviQI GTAC 4 cut(s) 481, 553, 600, 604
DpnI GATC 2 cut(s) 531, 579
DpnII GATC 2 cut(s) 529, 577
Eco105I TACGTA 3 cut(s) 473, 552, 603
Eco130I CCWWGG 3 cut(s) 191, 284, 670
Eco47I GGWCC 1 cut(s) 202
EcoRI GAATTC 3 cut(s) 148, 255, 268
EcoT14I CCWWGG 3 cut(s) 191, 284, 670
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 191, 284, 670
FaeI CATG 1 cut(s) 238
FaiI YATR 9 cut(s) 6, 70, 76, 94, 236, 378, 438, 476, 598
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 749
Fnu4HI GCNGC 3 cut(s) 106, 121, 232
FokI GGATG 2 cut(s) 506, 695
Fsp4HI GCNGC 3 cut(s) 106, 121, 232
FspBI CTAG 4 cut(s) 192, 212, 647, 771
GlaI GCGC 1 cut(s) 676
GluI GCNGC 3 cut(s) 106, 121, 232
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 594
HapII CCGG 3 cut(s) 384, 444, 570
HhaI GCGC 1 cut(s) 677
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HinfI GANTC 3 cut(s) 498, 650, 780
HpaII CCGG 3 cut(s) 384, 444, 570
Hpy166II GTNNAC 2 cut(s) 166, 188
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 4 cut(s) 145, 260, 647, 744
Hpy8I GTNNAC 2 cut(s) 166, 188
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 182, 731
HpyCH4IV ACGT 6 cut(s) 141, 456, 472, 551, 555, 602
HpyCH4V TGCA 5 cut(s) 4, 80, 105, 231, 478
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 216, 641
HpySE526I ACGT 6 cut(s) 141, 456, 472, 551, 555, 602
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 675
Kzo9I GATC 2 cut(s) 529, 577
Lsp1109I GCAGC 3 cut(s) 107, 117, 243
LweI GCATC 1 cut(s) 138
MaeI CTAG 4 cut(s) 192, 212, 647, 771
MaeII ACGT 6 cut(s) 141, 456, 472, 551, 555, 602
MaeIII GTNAC 2 cut(s) 457, 556
MalI GATC 2 cut(s) 531, 579
MboI GATC 2 cut(s) 529, 577
MboII GAAGA 2 cut(s) 404, 464
MfeI CAATTG 1 cut(s) 297
MluCI AATT 7 cut(s) 148, 255, 268, 297, 505, 695, 722
MlyI GAGTC 1 cut(s) 659
MnlI CCTC 5 cut(s) 119, 193, 342, 730, 740
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 705, 762
MspA1I CMGCKG 2 cut(s) 120, 635
MspI CCGG 3 cut(s) 384, 444, 570
MspR9I CCNGG 3 cut(s) 385, 445, 570
MunI CAATTG 1 cut(s) 297
MvnI CGCG 2 cut(s) 534, 677
MwoI GCNNNNNNNGC 3 cut(s) 126, 216, 641
NciI CCSGG 3 cut(s) 385, 445, 570
NdeII GATC 2 cut(s) 529, 577
NlaIII CATG 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 457, 556
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 238
PfeI GAWTC 2 cut(s) 498, 780
Pfl23II CGTACG 1 cut(s) 552
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 3 cut(s) 107, 122, 233
Ple19I CGATCG 1 cut(s) 532
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
Ppu21I YACGTR 3 cut(s) 473, 552, 603
PspFI CCCAGC 1 cut(s) 302
PspLI CGTACG 1 cut(s) 552
PspPI GGNCC 1 cut(s) 202
PstI CTGCAG 1 cut(s) 107
PvuI CGATCG 1 cut(s) 532
PvuII CAGCTG 2 cut(s) 120, 635
RgaI GCGATCGC 1 cut(s) 532
RsaI GTAC 4 cut(s) 482, 554, 601, 605
RsaNI GTAC 4 cut(s) 481, 553, 600, 604
SaqAI TTAA 2 cut(s) 705, 762
SatI GCNGC 3 cut(s) 106, 121, 232
Sau3AI GATC 2 cut(s) 529, 577
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 659
ScrFI CCNGG 3 cut(s) 385, 445, 570
SfaAI GCGATCGC 1 cut(s) 532
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 2 cut(s) 103, 250
SgfI GCGATCGC 1 cut(s) 532
SinI GGWCC 1 cut(s) 202
SnaBI TACGTA 3 cut(s) 473, 552, 603
SpeI ACTAGT 1 cut(s) 770
Sse9I AATT 7 cut(s) 148, 255, 268, 297, 505, 695, 722
SsiI CCGC 3 cut(s) 123, 534, 756
SspMI CTAG 4 cut(s) 192, 212, 647, 771
StyD4I CCNGG 3 cut(s) 383, 443, 568
StyI CCWWGG 3 cut(s) 191, 284, 670
TaaI ACNGT 2 cut(s) 182, 731
TaiI ACGT 6 cut(s) 144, 459, 475, 554, 558, 605
TaqI TCGA 3 cut(s) 246, 261, 658
TasI AATT 7 cut(s) 148, 255, 268, 297, 505, 695, 722
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 2 cut(s) 498, 780
Tru1I TTAA 2 cut(s) 705, 762
Tru9I TTAA 2 cut(s) 705, 762
TseFI GTSAC 2 cut(s) 457, 556
TseI GCWGC 3 cut(s) 105, 120, 231
Tsp45I GTSAC 2 cut(s) 457, 556
TspDTI ATGAA 3 cut(s) 102, 281, 772
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 3 cut(s) 148, 255, 268
XbaI TCTAGA 1 cut(s) 646
XceI RCATGY 1 cut(s) 238
XmaJI CCTAGG 1 cut(s) 191
XspI CTAG 4 cut(s) 192, 212, 647, 771
ZraI GACGTC 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.