Rmu_sc0000955.1_g000015

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000955.1
OG0000114
Physical Location & Seq
Reverse (-)
48209 .. 50556
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000955.1_g000015.1.cds

Sequence Viewer

Length: 1272 bp
atggatctcagttatgtccttagaatccccttcaaatcttcatcatgcaaaaacttccaagctcctcccaaaaaccccgaaaccgacatcaccacaatcccatgttgtcaaaccctcttatctctcattgcaataggccttgcccaacacctaaaagacacttctcttttcctactccccgacatagccacttcaattacttgcttccaagatttccagtccaagctcacctctctctccctcccttcctctattgtgccttattgttttgaccctatactatatgtcaccaaccccaatggttgtgctcatattgagtcttcccaagattgggtctccaagcttaaccagactgctgcacttgagtcatttgacactgcttgtaagccagacctcactgataaatcgtactgcgatacttgtctggtgtccggctttaaggttcaggaaagtttgatcaacctagatggtaacaattctcactacagaagttgttggtatataacacttcgctatgctgctggtatgatcaatgagtttggacctgaaagtaatggttctgtttcttgtctttttgatccaatggaaaacataaaattggattggggtaaacgctttcgaattatagaaggtatagctcaaggagtactttatatccacaagcactccagattgaaaatcattcacagagatctcaaagcaagcaatgtcctattggatgaagaaatgaaacccaaaatctcagactttggaatggcaaagattttcgagaaaaatcaaattgaagcaaatacaaaaaggattgttggaacatacggctacatgtcacctgagtatgcacgctttggccatttctctgaaaaatcggatgtatttagcttcggagtgctgctgttggagattgtaagtgggaagagaaatgctgctttgtatcgctttgaacacccactaactcttgcaggatgggcttggaaattatggaaagaaggtagaggaatgaaggtgattgatgcgtctgtgagggaaacatgcgtgcctcatgaagctttaaggtgtatccatttagcatttttgtgcgttcaagaagatccagctgatcgaccaacaatggctactgtaattctcatgttgggcaatgaatccacatcacttccactctccaaagaacctgcgtttacagcacatagtaattccgatgctcatggttcctgtccagcatctatcaatttttccaacaatgcaatcaccattagtatccccgaaggtcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

423

Amino Acids

47.14

Weight (kDa)

6.32

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1177
AclWI GGATC 3 cut(s) 12, 572, 1082
AcoI YGGCCR 1 cut(s) 847
AfaI GTAC 2 cut(s) 410, 648
AfiI CCNNNNNNNGG 2 cut(s) 330, 331
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 6 cut(s) 34, 195, 676, 785, 941, 1082
AluBI AGCT 7 cut(s) 62, 226, 343, 638, 879, 1046, 1094
AluI AGCT 7 cut(s) 62, 226, 343, 638, 879, 1046, 1094
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 3 cut(s) 12, 572, 1082
AoxI GGCC 2 cut(s) 136, 847
ApeKI GCWGC 4 cut(s) 356, 518, 889, 923
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 6 cut(s) 82, 220, 280, 819, 1015, 1237
AsuII TTCGAA 1 cut(s) 619
AvaII GGWCC 1 cut(s) 542
BalI TGGCCA 1 cut(s) 849
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 4 cut(s) 343, 505, 876, 910
BccI CCATC 2 cut(s) 461, 957
BceAI ACGGC 1 cut(s) 832
BciVI GTATCC 2 cut(s) 1067, 1265
BclI TGATCA 2 cut(s) 456, 528
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 484
BfuAI ACCTGC 1 cut(s) 1177
BfuI GTATCC 2 cut(s) 1067, 1265
BglII AGATCT 1 cut(s) 691
BisI GCNGC 4 cut(s) 357, 519, 890, 924
BlsI GCNGC 4 cut(s) 358, 520, 891, 925
BmcAI AGTACT 1 cut(s) 648
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 1207
BmsI GCATC 3 cut(s) 1000, 1186, 1226
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 652
Bpu14I TTCGAA 1 cut(s) 619
BpuEI CTTGAG 2 cut(s) 383, 624
BsaI GGTCTC 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 331
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 3 cut(s) 126, 712, 1141
BseGI GGATG 3 cut(s) 724, 874, 968
BseLI CCNNNNNNNGG 2 cut(s) 330, 331
BseMI GCAATG 3 cut(s) 126, 712, 1141
BseMII CTCAG 3 cut(s) 22, 756, 822
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 343, 505, 876, 910
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 2 cut(s) 138, 849
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 330, 331
BsmAI GTCTC 1 cut(s) 340
BsnI GGCC 2 cut(s) 138, 849
Bso31I GGTCTC 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 619
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 7 cut(s) 4, 456, 528, 577, 691, 1087, 1096
BspANI GGCC 2 cut(s) 138, 849
BspCNI CTCAG 3 cut(s) 21, 755, 823
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 1 cut(s) 1207
BspMI ACCTGC 1 cut(s) 1177
BspPI GGATC 3 cut(s) 12, 572, 1082
BspT104I TTCGAA 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 3 cut(s) 126, 712, 1141
BsrI ACTGG 1 cut(s) 217
BssMI GATC 7 cut(s) 4, 456, 528, 577, 691, 1087, 1096
Bst4CI ACNGT 1 cut(s) 1117
Bst6I CTCTTC 1 cut(s) 908
BstBI TTCGAA 1 cut(s) 619
BstC8I GCNNGC 3 cut(s) 703, 841, 1034
BstDEI CTNAG 4 cut(s) 8, 20, 742, 831
BstF5I GGATG 3 cut(s) 724, 874, 968
BstKTI GATC 7 cut(s) 7, 459, 531, 580, 694, 1090, 1099
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 7 cut(s) 4, 456, 528, 577, 691, 1087, 1096
BstMWI GCNNNNNNNGC 2 cut(s) 965, 1178
BstNSI RCATGY 2 cut(s) 826, 1032
BstSFI CTRYAG 1 cut(s) 484
BstV1I GCAGC 4 cut(s) 343, 505, 876, 910
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 3 cut(s) 4, 691, 1087
BstYI RGATCY 3 cut(s) 4, 691, 1087
BsuI GTATCC 2 cut(s) 1067, 1265
BsuRI GGCC 2 cut(s) 138, 849
BtsCI GGATG 3 cut(s) 724, 874, 968
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 375, 396
BveI ACCTGC 1 cut(s) 1177
Cac8I GCNNGC 3 cut(s) 703, 841, 1034
CciI TCATGA 1 cut(s) 1039
Cfr13I GGNCC 1 cut(s) 542
CseI GACGC 1 cut(s) 1002
Csp6I GTAC 2 cut(s) 409, 647
CviAII CATG 7 cut(s) 45, 102, 823, 1029, 1040, 1126, 1202
CviQI GTAC 2 cut(s) 409, 647
DdeI CTNAG 4 cut(s) 8, 20, 742, 831
DpnI GATC 7 cut(s) 6, 458, 530, 579, 693, 1089, 1098
DpnII GATC 7 cut(s) 4, 456, 528, 577, 691, 1087, 1096
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 1 cut(s) 908
EarI CTCTTC 1 cut(s) 908
Eco147I AGGCCT 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 542
FaeI CATG 7 cut(s) 48, 105, 826, 1032, 1043, 1129, 1205
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FatI CATG 7 cut(s) 44, 101, 822, 1028, 1039, 1125, 1201
FbaI TGATCA 2 cut(s) 456, 528
Fnu4HI GCNGC 4 cut(s) 357, 519, 890, 924
FokI GGATG 3 cut(s) 731, 881, 975
Fsp4HI GCNGC 4 cut(s) 357, 519, 890, 924
FspBI CTAG 1 cut(s) 464
GluI GCNGC 4 cut(s) 357, 519, 890, 924
GsuI CTGGAG 1 cut(s) 652
HaeIII GGCC 2 cut(s) 138, 849
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 1002
Hin1II CATG 7 cut(s) 48, 105, 826, 1032, 1043, 1129, 1205
HindIII AAGCTT 2 cut(s) 341, 1044
HinfI GANTC 4 cut(s) 24, 317, 365, 1139
HpaII CCGG 1 cut(s) 432
HphI GGTGA 6 cut(s) 82, 220, 280, 819, 1015, 1237
Hpy166II GTNNAC 2 cut(s) 611, 1176
Hpy188I TCNGA 5 cut(s) 745, 859, 868, 884, 1195
Hpy188III TCNNGA 5 cut(s) 446, 669, 769, 1040, 1082
Hpy8I GTNNAC 2 cut(s) 611, 1176
HpyAV CCTTC 6 cut(s) 40, 255, 623, 980, 994, 1256
HpyCH4III ACNGT 1 cut(s) 1117
HpyCH4V TGCA 6 cut(s) 48, 131, 359, 839, 959, 1241
HpyF10VI GCNNNNNNNGC 2 cut(s) 965, 1178
HpyF3I CTNAG 4 cut(s) 8, 20, 742, 831
Hsp92II CATG 7 cut(s) 48, 105, 826, 1032, 1043, 1129, 1205
Ksp22I TGATCA 2 cut(s) 456, 528
Kzo9I GATC 7 cut(s) 4, 456, 528, 577, 691, 1087, 1096
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 4 cut(s) 343, 505, 876, 910
LweI GCATC 3 cut(s) 1000, 1186, 1226
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 3 cut(s) 286, 470, 825
MalI GATC 7 cut(s) 6, 458, 530, 579, 693, 1089, 1098
MboI GATC 7 cut(s) 4, 456, 528, 577, 691, 1087, 1096
MboII GAAGA 5 cut(s) 30, 312, 734, 925, 1097
MflI RGATCY 3 cut(s) 4, 691, 1087
MhlI GDGCHC 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 849
MluCI AATT 9 cut(s) 195, 475, 596, 621, 780, 974, 1119, 1189, 1225
MluNI TGGCCA 1 cut(s) 849
MlyI GAGTC 2 cut(s) 326, 374
MmeI TCCRAC 3 cut(s) 787, 876, 1257
MnlI CCTC 9 cut(s) 75, 125, 241, 251, 259, 404, 986, 1014, 1047
Mox20I TGGCCA 1 cut(s) 849
MscI TGGCCA 1 cut(s) 849
MseI TTAA 3 cut(s) 345, 438, 1049
MslI CAYNNNNRTG 1 cut(s) 1072
Msp20I TGGCCA 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 1094
MspI CCGG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 965, 1178
NdeII GATC 7 cut(s) 4, 456, 528, 577, 691, 1087, 1096
NlaIII CATG 7 cut(s) 48, 105, 826, 1032, 1043, 1129, 1205
NlaIV GGNNCC 1 cut(s) 1207
NmuCI GTSAC 2 cut(s) 286, 825
NspI RCATGY 2 cut(s) 826, 1032
NspV TTCGAA 1 cut(s) 619
PagI TCATGA 1 cut(s) 1039
PceI AGGCCT 1 cut(s) 138
PciI ACATGT 1 cut(s) 822
PfeI GAWTC 2 cut(s) 24, 1139
PkrI GCNGC 4 cut(s) 358, 520, 891, 925
PleI GAGTC 2 cut(s) 325, 373
PpsI GAGTC 2 cut(s) 325, 373
PscI ACATGT 1 cut(s) 822
PspN4I GGNNCC 1 cut(s) 1207
PspPI GGNCC 1 cut(s) 542
PsuI RGATCY 3 cut(s) 4, 691, 1087
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 2 cut(s) 410, 648
RsaNI GTAC 2 cut(s) 409, 647
RseI CAYNNNNRTG 1 cut(s) 1072
SaqAI TTAA 3 cut(s) 345, 438, 1049
SatI GCNGC 4 cut(s) 357, 519, 890, 924
Sau3AI GATC 7 cut(s) 4, 456, 528, 577, 691, 1087, 1096
Sau96I GGNCC 1 cut(s) 542
ScaI AGTACT 1 cut(s) 648
SchI GAGTC 2 cut(s) 326, 374
SduI GDGCHC 1 cut(s) 310
SfaNI GCATC 3 cut(s) 1000, 1186, 1226
SfcI CTRYAG 1 cut(s) 484
SfuI TTCGAA 1 cut(s) 619
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 1072
SmlI CTYRAG 2 cut(s) 362, 639
SmoI CTYRAG 2 cut(s) 362, 639
Sse9I AATT 9 cut(s) 195, 475, 596, 621, 780, 974, 1119, 1189, 1225
SseBI AGGCCT 1 cut(s) 138
SspMI CTAG 1 cut(s) 464
StuI AGGCCT 1 cut(s) 138
TaaI ACNGT 1 cut(s) 1117
TaqI TCGA 4 cut(s) 619, 768, 1099, 1267
TasI AATT 9 cut(s) 195, 475, 596, 621, 780, 974, 1119, 1189, 1225
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 2 cut(s) 24, 1139
Tru1I TTAA 3 cut(s) 345, 438, 1049
Tru9I TTAA 3 cut(s) 345, 438, 1049
TscAI CASTG 2 cut(s) 382, 403
TseFI GTSAC 2 cut(s) 286, 825
TseI GCWGC 4 cut(s) 356, 518, 889, 923
Tsp45I GTSAC 2 cut(s) 286, 825
TspDTI ATGAA 6 cut(s) 30, 735, 743, 1013, 1056, 1152
TspRI CASTG 2 cut(s) 382, 403
VpaK11BI GGWCC 1 cut(s) 542
XceI RCATGY 2 cut(s) 826, 1032
XspI CTAG 1 cut(s) 464
ZrmI AGTACT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.