Rh2CG562700

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000114
Physical Location & Seq
Forward (+)
74096252 .. 74096779
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG562700.1

Sequence Viewer

Length: 528 bp
ATGGGGTGGCCCTTGTGTTACCTTGTCACATTGCTCTTATCTCACATCCTGTCATTCTGTACCTGCCGAGACAAAATAGTTCTAGGACAGTATATCAATGGTAACCACACAGTCTCTTCCCTTGGGACCTTTTCATTAGGCTTCTTCAATCCTAATGAAAATTCTACTAAATACTTCCTTGGTATACGATTTAACACATTCCCAAATACTGCATTAGTATGGGTTGCCAATAGAGAATCTTCACTTGATTTTCCGGGTTTCTTTATGATCAGCAGGGATGGAAATCTTGTGGTGTTGGATCAGGCTAGAAATCTTGTCTGGTCAACTAATGCATCACTATCTGCTTCCGCAATGAACCACACAACTGGATTACTAGAGGATACCGAAAACCTTGTGGTGTTGGATCAGGCTAGAAATCTTGTCTGGTCAACTAATGCATCACTATCTGCTTCCGCAATGAACCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

175

Amino Acids

19.3

Weight (kDa)

4.98

Isoelectric Point (pI)

16.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 133 7.4e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 184
AciI CCGC 2 cut(s) 348, 453
AclWI GGATC 2 cut(s) 306, 411
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 2 cut(s) 148, 512
AloI GAACNNNNNNTCC 2 cut(s) 483, 515
AluBI AGCT 1 cut(s) 507
AluI AGCT 1 cut(s) 507
Alw26I GTCTC 2 cut(s) 63, 118
AlwI GGATC 2 cut(s) 306, 411
AoxI GGCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 9, 126
AsuC2I CCSGG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 126
BccI CCATC 1 cut(s) 272
BciVI GTATCC 2 cut(s) 373, 478
BclI TGATCA 1 cut(s) 267
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 63, 118
BfaI CTAG 5 cut(s) 83, 306, 374, 411, 479
BfuAI ACCTGC 1 cut(s) 71
BfuI GTATCC 2 cut(s) 373, 478
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 9, 126
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 2 cut(s) 341, 446
BpuMI CCSGG 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 121, 178
BsaWI WCCGGW 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 370, 475
Bse3DI GCAATG 3 cut(s) 29, 357, 462
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 121, 178
BseGI GGATG 2 cut(s) 45, 283
BseJI GATNNNNATC 1 cut(s) 282
BseMI GCAATG 3 cut(s) 29, 357, 462
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 370, 475
BshFI GGCC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 254, 489
BslFI GGGAC 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 63, 118
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 267, 298, 403
BspACI CCGC 2 cut(s) 348, 453
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 495
BspLI GGNNCC 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 2 cut(s) 306, 411
BsrDI GCAATG 3 cut(s) 29, 357, 462
BsrI ACTGG 2 cut(s) 370, 475
BssECI CCNNGG 2 cut(s) 121, 178
BssMI GATC 3 cut(s) 267, 298, 403
BssNAI GTATAC 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 121, 178
Bst1107I GTATAC 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 90, 112
Bst6I CTCTTC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 503
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 2 cut(s) 45, 283
BstKTI GATC 3 cut(s) 270, 301, 406
BstMAI GTCTC 2 cut(s) 63, 118
BstMBI GATC 3 cut(s) 267, 298, 403
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 253
BstXI CCANNNNNNTGG 2 cut(s) 365, 470
BstZ17I GTATAC 1 cut(s) 185
BsuI GTATCC 2 cut(s) 373, 478
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 2 cut(s) 45, 283
BveI ACCTGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 9, 126
Csp6I GTAC 1 cut(s) 60
CviJI RGCY 5 cut(s) 10, 141, 305, 410, 507
CviKI_1 RGCY 5 cut(s) 10, 141, 305, 410, 507
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 503
DpnI GATC 3 cut(s) 269, 300, 405
DpnII GATC 3 cut(s) 267, 298, 403
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 121, 178
Eco47I GGWCC 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 126
EcoO65I GGTNACC 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 121, 178
EcoT22I ATGCAT 2 cut(s) 334, 439
ErhI CCWWGG 2 cut(s) 121, 178
FaiI YATR 4 cut(s) 93, 185, 220, 266
FaqI GGGAC 1 cut(s) 139
FbaI TGATCA 1 cut(s) 267
FblI GTMKAC 1 cut(s) 184
FokI GGATG 2 cut(s) 32, 290
FspBI CTAG 5 cut(s) 83, 306, 374, 411, 479
HaeIII GGCC 1 cut(s) 10
HapII CCGG 2 cut(s) 254, 489
HincII GTYRAC 2 cut(s) 324, 429
HindII GTYRAC 2 cut(s) 324, 429
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 254, 489
Hpy166II GTNNAC 3 cut(s) 185, 324, 429
Hpy188I TCNGA 1 cut(s) 504
Hpy8I GTNNAC 3 cut(s) 185, 324, 429
HpyCH4III ACNGT 2 cut(s) 90, 112
HpyCH4V TGCA 3 cut(s) 212, 332, 437
HpyF3I CTNAG 1 cut(s) 503
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 3 cut(s) 267, 298, 403
LweI GCATC 2 cut(s) 341, 446
MaeI CTAG 5 cut(s) 83, 306, 374, 411, 479
MaeIII GTNAC 4 cut(s) 17, 25, 101, 517
MalI GATC 3 cut(s) 269, 300, 405
MboI GATC 3 cut(s) 267, 298, 403
MboII GAAGA 4 cut(s) 108, 136, 231, 524
MluCI AATT 1 cut(s) 160
MmeI TCCRAC 2 cut(s) 276, 381
MnlI CCTC 2 cut(s) 370, 475
Mph1103I ATGCAT 2 cut(s) 334, 439
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 2 cut(s) 254, 489
MspR9I CCNGG 1 cut(s) 255
NciI CCSGG 1 cut(s) 255
NdeII GATC 3 cut(s) 267, 298, 403
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 25, 517
NsiI ATGCAT 2 cut(s) 334, 439
PfeI GAWTC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 9, 126
PspPPI RGGWCCY 1 cut(s) 126
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 3 cut(s) 267, 298, 403
Sau96I GGNCC 2 cut(s) 9, 126
ScrFI CCNGG 1 cut(s) 255
SetI ASST 6 cut(s) 24, 65, 131, 393, 498, 509
SfaNI GCATC 2 cut(s) 341, 446
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 1 cut(s) 160
SsiI CCGC 2 cut(s) 348, 453
SspMI CTAG 5 cut(s) 83, 306, 374, 411, 479
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 2 cut(s) 121, 178
TaaI ACNGT 2 cut(s) 90, 112
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 2 cut(s) 25, 517
Tsp45I GTSAC 2 cut(s) 25, 517
TspDTI ATGAA 4 cut(s) 123, 171, 368, 473
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 5 cut(s) 83, 306, 374, 411, 479
Zsp2I ATGCAT 2 cut(s) 334, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.