Rmu_sc0000322.1_g000011

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000322.1
OG0000114
Physical Location & Seq
Forward (+)
44184 .. 46114
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000322.1_g000011.1.cds

Sequence Viewer

Length: 1011 bp
atggacatcaccctgatcccatgttgtcaaaccttatggtatctctttggaataggccttgctcaacacctcaaggccaccacttttttcctactccccaacatagcaacctcaaattcttgcctccaaaactaccagtccaagcttacctctctagcaatcccttccaatcttctctcttattgttttgaccctttacagtttgtaactggtcccaatttctgtgcccaaattgaatcttcccaagatttgatctccaagcttaatcagatcactggaattgactctggatgcaagccagacctcgcagatctctcaccctatccaagggaaaacataaaattggattggggtaaacgctttcgaattgtagaaggtacagctcaaggtgtactttatatccacaaatactccagattgaaaatcattcacagggatctaaaagcaagtaatgttctgttggatgaagaaatgaaccctaaaatttcagattttggaatggcaaagattttcgagataaatcagattgaagcaaataccaacagggttgttgggacatatggttatatgtcacctgagtatgctcgctatggtcatttttctgagaaattggatgtatttagttttggagtgttgttgctagagattgtaagtggaaggaggaattcttctttctatcgtcttgaacacccagttactcttcctggatgggcatggaaattatggaaagaaggtagaggaatggaggtgattgatgagtcagtgagagaaacatgtctgcctcatgaagctttaaggtgtatccatgtagcattattgtgtgttcaagaagatccagttgatcgaccaacaatgtcttctgtaaatcacatgttggctaatgaagctacatcacttccaccattcaaagaacctgcattttcaacacatggaaattataaagctgtttgctcttcttctcaatcatctaccattaatctggtaaccattagcatccctgaaggtcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

336

Amino Acids

37.78

Weight (kDa)

6.31

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
Acc36I ACCTGC 1 cut(s) 922
AclWI GGATC 3 cut(s) 10, 444, 827
AcsI RAATTY 3 cut(s) 115, 483, 664
AfaI GTAC 2 cut(s) 379, 393
AfiI CCNNNNNNNGG 1 cut(s) 327
AflIII ACRYGT 2 cut(s) 773, 870
AgsI TTSAA 7 cut(s) 236, 421, 530, 686, 827, 907, 924
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 2 cut(s) 841, 873
AluBI AGCT 6 cut(s) 145, 262, 383, 791, 887, 944
AluI AGCT 6 cut(s) 145, 262, 383, 791, 887, 944
AlwI GGATC 3 cut(s) 10, 444, 827
AoxI GGCC 2 cut(s) 55, 75
ApoI RAATTY 3 cut(s) 115, 483, 664
AseI ATTAAT 1 cut(s) 975
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 309, 564, 760
AsuII TTCGAA 1 cut(s) 364
AvaII GGWCC 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 849
BccI CCATC 1 cut(s) 702
BciT130I CCWGG 1 cut(s) 705
BciVI GTATCC 1 cut(s) 812
BfaI CTAG 2 cut(s) 155, 641
BfuAI ACCTGC 1 cut(s) 922
BfuI GTATCC 1 cut(s) 812
BglII AGATCT 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 705
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 2 cut(s) 281, 1002
BmuI ACTGGG 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 849
BpmI CTGGAG 1 cut(s) 397
Bpu14I TTCGAA 1 cut(s) 364
BpuEI CTTGAG 2 cut(s) 56, 369
BsaJI CCNNGG 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 5 cut(s) 136, 214, 280, 692, 836
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 5 cut(s) 296, 469, 619, 713, 993
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 567, 594
BseNI ACTGG 5 cut(s) 136, 214, 280, 692, 836
BseSI GKGCMC 1 cut(s) 229
BshFI GGCC 2 cut(s) 57, 77
BslFI GGGAC 2 cut(s) 198, 568
BslI CCNNNNNNNGG 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 198, 568
BsnI GGCC 2 cut(s) 57, 77
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 7 cut(s) 15, 252, 270, 310, 436, 832, 841
BspANI GGCC 2 cut(s) 57, 77
BspCNI CTCAG 2 cut(s) 568, 595
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 3 cut(s) 10, 444, 827
BspQI GCTCTTC 1 cut(s) 958
BspT104I TTCGAA 1 cut(s) 364
BsrI ACTGG 5 cut(s) 136, 214, 280, 692, 836
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 7 cut(s) 15, 252, 270, 310, 436, 832, 841
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 705, 958
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 296, 586
BstDEI CTNAG 2 cut(s) 576, 603
BstEII GGTNACC 1 cut(s) 982
BstENI CCTNNNNNAGG 1 cut(s) 325
BstF5I GGATG 5 cut(s) 296, 469, 619, 713, 993
BstKTI GATC 7 cut(s) 18, 255, 273, 313, 439, 835, 844
BstMBI GATC 7 cut(s) 15, 252, 270, 310, 436, 832, 841
BstMWI GCNNNNNNNGC 1 cut(s) 884
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 2 cut(s) 777, 874
BstPI GGTNACC 1 cut(s) 982
BstSCI CCNGG 1 cut(s) 703
BstSLI GKGCMC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 3 cut(s) 310, 436, 832
BstXI CCANNNNNNTGG 1 cut(s) 979
BstYI RGATCY 3 cut(s) 310, 436, 832
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 2 cut(s) 57, 77
BtsCI GGATG 5 cut(s) 296, 469, 619, 713, 993
BtsIMutI CAGTG 2 cut(s) 273, 768
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 2 cut(s) 296, 586
CciI TCATGA 1 cut(s) 784
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 378, 392
CviAII CATG 7 cut(s) 21, 714, 774, 785, 806, 871, 929
CviQI GTAC 2 cut(s) 378, 392
DdeI CTNAG 2 cut(s) 576, 603
DpnI GATC 7 cut(s) 17, 254, 272, 312, 438, 834, 843
DpnII GATC 7 cut(s) 15, 252, 270, 310, 436, 832, 841
Eam1104I CTCTTC 2 cut(s) 705, 958
EarI CTCTTC 2 cut(s) 705, 958
Eco130I CCWWGG 1 cut(s) 326
Eco147I AGGCCT 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 982
EcoNI CCTNNNNNAGG 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 982
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 7 cut(s) 24, 717, 777, 788, 809, 874, 932
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 2 cut(s) 198, 568
FatI CATG 7 cut(s) 20, 713, 773, 784, 805, 870, 928
FauNDI CATATG 1 cut(s) 559
FokI GGATG 5 cut(s) 303, 476, 626, 720, 980
FspBI CTAG 2 cut(s) 155, 641
GsuI CTGGAG 1 cut(s) 397
HaeIII GGCC 2 cut(s) 57, 77
Hin1II CATG 7 cut(s) 24, 717, 777, 788, 809, 874, 932
HindIII AAGCTT 3 cut(s) 143, 260, 789
HinfI GANTC 3 cut(s) 236, 284, 758
HphI GGTGA 3 cut(s) 309, 564, 760
Hpy166II GTNNAC 2 cut(s) 356, 392
Hpy188I TCNGA 4 cut(s) 270, 490, 525, 604
Hpy188III TCNNGA 6 cut(s) 288, 414, 514, 683, 785, 827
Hpy8I GTNNAC 2 cut(s) 356, 392
HpyAV CCTTC 5 cut(s) 174, 368, 651, 725, 995
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 294, 917
HpyF10VI GCNNNNNNNGC 1 cut(s) 884
HpyF3I CTNAG 2 cut(s) 576, 603
Hsp92II CATG 7 cut(s) 24, 717, 777, 788, 809, 874, 932
Kzo9I GATC 7 cut(s) 15, 252, 270, 310, 436, 832, 841
LguI GCTCTTC 1 cut(s) 958
LweI GCATC 2 cut(s) 281, 1002
MaeI CTAG 2 cut(s) 155, 641
MaeIII GTNAC 4 cut(s) 205, 570, 694, 982
MalI GATC 7 cut(s) 17, 254, 272, 312, 438, 834, 843
MboI GATC 7 cut(s) 15, 252, 270, 310, 436, 832, 841
MboII GAAGA 9 cut(s) 164, 231, 479, 660, 692, 842, 849, 945, 948
MflI RGATCY 3 cut(s) 310, 436, 832
MhlI GDGCHC 1 cut(s) 229
MlyI GAGTC 2 cut(s) 278, 767
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 9 cut(s) 80, 121, 134, 160, 314, 654, 731, 739, 792
MseI TTAA 3 cut(s) 264, 794, 975
MslI CAYNNNNRTG 1 cut(s) 817
MspR9I CCNGG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 705
MwoI GCNNNNNNNGC 1 cut(s) 884
NdeI CATATG 1 cut(s) 559
NdeII GATC 7 cut(s) 15, 252, 270, 310, 436, 832, 841
NlaIII CATG 7 cut(s) 24, 717, 777, 788, 809, 874, 932
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 570
NspI RCATGY 2 cut(s) 777, 874
NspV TTCGAA 1 cut(s) 364
PagI TCATGA 1 cut(s) 784
PceI AGGCCT 1 cut(s) 57
PciI ACATGT 2 cut(s) 773, 870
PciSI GCTCTTC 1 cut(s) 958
PfeI GAWTC 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 703
PleI GAGTC 2 cut(s) 278, 766
PpsI GAGTC 2 cut(s) 278, 766
PscI ACATGT 2 cut(s) 773, 870
PshBI ATTAAT 1 cut(s) 975
PsiI TTATAA 1 cut(s) 939
Psp6I CCWGG 1 cut(s) 703
PspEI GGTNACC 1 cut(s) 982
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 3 cut(s) 310, 436, 832
RsaI GTAC 2 cut(s) 379, 393
RsaNI GTAC 2 cut(s) 378, 392
RseI CAYNNNNRTG 1 cut(s) 817
SapI GCTCTTC 1 cut(s) 958
SaqAI TTAA 3 cut(s) 264, 794, 975
Sau3AI GATC 7 cut(s) 15, 252, 270, 310, 436, 832, 841
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 2 cut(s) 278, 767
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 2 cut(s) 281, 1002
SfuI TTCGAA 1 cut(s) 364
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 817
SmlI CTYRAG 2 cut(s) 71, 384
SmoI CTYRAG 2 cut(s) 71, 384
SseBI AGGCCT 1 cut(s) 57
SspMI CTAG 2 cut(s) 155, 641
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 4 cut(s) 364, 513, 844, 1006
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 264, 794, 975
Tru9I TTAA 3 cut(s) 264, 794, 975
TscAI CASTG 2 cut(s) 280, 768
TseFI GTSAC 1 cut(s) 570
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 4 cut(s) 480, 488, 801, 897
TspRI CASTG 2 cut(s) 280, 768
VpaK11BI GGWCC 1 cut(s) 212
VspI ATTAAT 1 cut(s) 975
XagI CCTNNNNNAGG 1 cut(s) 325
XapI RAATTY 3 cut(s) 115, 483, 664
XceI RCATGY 2 cut(s) 777, 874
XspI CTAG 2 cut(s) 155, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.