RchiOBHm_Chr2g0165121

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000114
Physical Location & Seq
Forward (+)
80144567 .. 80145049
483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53309

Sequence Viewer

Length: 483 bp
ATGATCAGCAGGGATGGAAATCTTGTGGTGTTGGATCAGGCTAGAAATCTTGTCTGGTCAACTAATGCATCACTATCTACTTCTGCAATGAACCACACAACTCGATTACTAGAGGATACCGGAAACCTAGTTCTGAGCTTTGAAGAAGTCACTTTATGGCAGAGCTTCGATCATCCCTCTGATACTTTGTTGCCTGGCATTAAGATTAGCTTGAACAAAATGACTGGCCAACACAGGCTCCTTACATCCTGGGCTGCGCTTGATGATCCACAACCCGGCAAGTTCACCTTAGGAATAGATCCTAAAGTACCAATTCAGTGCTTTACCTGGAAAGAAACTACTCGGTATTGTAGAAGTTCTATGTACATCAGCAAGGATACAGGAACAAAGTTTCAAAATCGAGGTGGAACCATTTTTTCCTTACTTACAACTTTGATGTTGATGAGGTTTATATTGCTTATAGTGTCTCGAATAGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

160

Amino Acids

18.08

Weight (kDa)

8.66

Isoelectric Point (pI)

21.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 2 - 84 2.5e-24 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 42, 260, 293
AcoI YGGCCR 1 cut(s) 226
AfaI GTAC 2 cut(s) 309, 365
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 143, 214, 395
AjnI CCWGG 3 cut(s) 193, 248, 326
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 138, 165, 210
AluI AGCT 3 cut(s) 138, 165, 210
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 3 cut(s) 42, 260, 293
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 289
BalI TGGCCA 1 cut(s) 228
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 3 cut(s) 195, 250, 328
BciVI GTATCC 2 cut(s) 109, 370
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 3 cut(s) 42, 110, 128
BfuI GTATCC 2 cut(s) 109, 370
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 4 cut(s) 195, 250, 276, 328
BmiI GGNNCC 2 cut(s) 239, 409
BmrFI CCNGG 4 cut(s) 195, 250, 276, 328
BmsI GCATC 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 229
Bse21I CCTNAGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 3 cut(s) 195, 250, 328
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 3 cut(s) 19, 172, 245
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 228
BsiSI CCGG 2 cut(s) 120, 276
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 471
BsnI GGCC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 6 cut(s) 3, 34, 169, 265, 298, 475
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 239, 409
BspPI GGATC 3 cut(s) 42, 260, 293
BsrDI GCAATG 1 cut(s) 93
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 6 cut(s) 3, 34, 169, 265, 298, 475
Bst2UI CCWGG 3 cut(s) 195, 250, 328
BstAUI TGTACA 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 134, 289
BstF5I GGATG 3 cut(s) 19, 172, 245
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 6 cut(s) 6, 37, 172, 268, 301, 478
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 6 cut(s) 3, 34, 169, 265, 298, 475
BstNI CCWGG 3 cut(s) 195, 250, 328
BstSCI CCNGG 4 cut(s) 193, 248, 274, 326
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 289
BsuI GTATCC 2 cut(s) 109, 370
BsuRI GGCC 1 cut(s) 228
BtsCI GGATG 3 cut(s) 19, 172, 245
BtsIMutI CAGTG 1 cut(s) 323
CfoI GCGC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 308, 364
CviJI RGCY 7 cut(s) 41, 138, 165, 210, 228, 238, 254
CviKI_1 RGCY 7 cut(s) 41, 138, 165, 210, 228, 238, 254
CviQI GTAC 2 cut(s) 308, 364
DdeI CTNAG 2 cut(s) 134, 289
DpnI GATC 6 cut(s) 5, 36, 171, 267, 300, 477
DpnII GATC 6 cut(s) 3, 34, 169, 265, 298, 475
EaeI YGGCCR 1 cut(s) 226
Eco81I CCTNAGG 1 cut(s) 289
EcoRII CCWGG 3 cut(s) 193, 248, 326
EcoT22I ATGCAT 1 cut(s) 70
FaiI YATR 4 cut(s) 157, 362, 452, 461
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 272, 304
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 3 cut(s) 26, 159, 232
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 3 cut(s) 42, 110, 128
GlaI GCGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 120, 276
HhaI GCGC 1 cut(s) 259
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HpaII CCGG 2 cut(s) 120, 276
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 60, 285
Hpy188I TCNGA 2 cut(s) 135, 181
Hpy188III TCNNGA 1 cut(s) 468
Hpy8I GTNNAC 2 cut(s) 60, 285
HpyCH4V TGCA 2 cut(s) 68, 86
HpyF3I CTNAG 2 cut(s) 134, 289
HspAI GCGC 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 34, 169, 265, 298, 475
LmnI GCTCC 1 cut(s) 243
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 77
MaeI CTAG 3 cut(s) 42, 110, 128
MaeIII GTNAC 1 cut(s) 148
MalI GATC 6 cut(s) 5, 36, 171, 267, 300, 477
MboI GATC 6 cut(s) 3, 34, 169, 265, 298, 475
MboII GAAGA 1 cut(s) 155
MflI RGATCY 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 1 cut(s) 312
MluNI TGGCCA 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 4 cut(s) 106, 187, 395, 438
Mox20I TGGCCA 1 cut(s) 228
Mph1103I ATGCAT 1 cut(s) 70
MscI TGGCCA 1 cut(s) 228
MseI TTAA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 2 cut(s) 120, 276
MspR9I CCNGG 4 cut(s) 195, 250, 276, 328
MvaI CCWGG 3 cut(s) 195, 250, 328
NciI CCSGG 1 cut(s) 276
NdeII GATC 6 cut(s) 3, 34, 169, 265, 298, 475
NlaIV GGNNCC 2 cut(s) 239, 409
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 70
PkrI GCNGC 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 193, 248, 326
PspGI CCWGG 3 cut(s) 193, 248, 326
PspN4I GGNNCC 2 cut(s) 239, 409
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 2 cut(s) 309, 365
RsaNI GTAC 2 cut(s) 308, 364
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 6 cut(s) 3, 34, 169, 265, 298, 475
ScrFI CCNGG 4 cut(s) 195, 250, 276, 328
SetI ASST 8 cut(s) 129, 140, 167, 212, 290, 329, 406, 449
SfaNI GCATC 1 cut(s) 77
Sse9I AATT 1 cut(s) 312
SspMI CTAG 3 cut(s) 42, 110, 128
StyD4I CCNGG 4 cut(s) 193, 248, 274, 326
TaqI TCGA 4 cut(s) 103, 168, 400, 469
TasI AATT 1 cut(s) 312
TatI WGTACW 1 cut(s) 363
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 323
XspI CTAG 3 cut(s) 42, 110, 128
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.