Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000114

Physical Location & Seq

Genomic Coordinates Forward (+)

33642601 .. 33643660

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAATTCCTTTGTGCTACTTCAGTCCTCTTTGATTCCTTTGCTTTTGATCACTTCCTTTCTGTCGATCAATTTTCAATTGAGTGTGTGCGCCGATGATACAGTGGAATATGCCAACTGCAGCCAACTTATTACCTGCGGGAGCGTCAAAAGCAACATCTCTTACCCCTTTTGGGGAGCGAACCGACCCGAATACTGTGGCAAATCTGGGTTTGAGGTCACATGCGAAGCCAACGTCCCAGTGATCACCATGAGGAATATCAAGTTCAGAATTCTTGACATGAGCAATAGTAGTACTACTACAACAACTCCTACCGTAAAAGTTGCTAGGCAGGATTACTGGGAAGATATCTGTCCCTCGACATATGTTTCCACAACCCTCGACTTCTCTCTCTTCGCTTACTCTTCTGGGCTTCTGAACGTGTCTATTTGGTACGGATGCAATGCAACCGTAACAGTCACAGGTAATTCGTATCCCTGCAACAGTAGCATCGCTGCTTCCTATCTCACACAGACGAGAGCTATTAATGTCCCAATTGATCCAGTTACTACGGGAGCCTGTCAATATAAGGTTTTAGTTCCGGTATTTGAATCCGCTTCTGAGGCTCTGGACAACAATGCTACAGATATTGAGACTGCCATAGATGGTGGTTTTGAATTGGATGTGCTAGATGCTGATAATGGCCTTTGCACCGGTTGCTTGTCATCAGGGGGAGTTTGTGGGCAAGACACTACTGTTACCAACGAATTCAAGTGCTTTTGCCAGACTACTTCATCTTCGACAACCACATGTATTGAAAGCTCTTCACCATCTCCAACTTCAGCTCCATCAGGTATCATCAGTTTCTCCCCTTATCGATATACAGATACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

291

Amino Acids

31.23

Weight (kDa)

4.16

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	40 - 100	2.4e-14	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	183 - 255	3.2e-12	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica	MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica	Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis	pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis	RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata	RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora	Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa	Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha	Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana	Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AciI	CCGC	2 cut(s)	138, 594
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	3 cut(s)	4, 270, 746
AcuI	CTGAAG	2 cut(s)	5, 804
AfaI	GTAC	2 cut(s)	295, 434
AfiI	CCNNNNNNNGG	2 cut(s)	172, 173
AflIII	ACRYGT	2 cut(s)	420, 788
AgeI	ACCGGT	1 cut(s)	692
AgsI	TTSAA	5 cut(s)	77, 590, 656, 751, 797
AluBI	AGCT	3 cut(s)	521, 801, 824
AluI	AGCT	3 cut(s)	521, 801, 824
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	533
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	2 cut(s)	120, 494
ApoI	RAATTY	3 cut(s)	4, 270, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AseI	ATTAAT	1 cut(s)	525
AsiGI	ACCGGT	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	238, 798
BbvI	GCAGC	2 cut(s)	132, 481
BccI	CCATC	3 cut(s)	638, 817, 835
BciVI	GTATCC	1 cut(s)	483
BclI	TGATCA	2 cut(s)	48, 243
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	2 cut(s)	327, 668
BfmI	CTRYAG	2 cut(s)	118, 621
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	483
BisI	GCNGC	2 cut(s)	121, 495
BlsI	GCNGC	2 cut(s)	122, 496
BmcAI	AGTACT	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	556
BmrI	ACTGGG	2 cut(s)	233, 349
BmsI	GCATC	3 cut(s)	428, 498, 661
BmuI	ACTGGG	2 cut(s)	233, 349
Bsa29I	ATCGAT	1 cut(s)	856
BsaWI	WCCGGW	2 cut(s)	580, 692
BsaXI	ACNNNNNCTCC	4 cut(s)	292, 322, 808, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 173
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	3 cut(s)	239, 344, 542
Bse3DI	GCAATG	1 cut(s)	448
BseCI	ATCGAT	1 cut(s)	856
BseGI	GGATG	2 cut(s)	443, 667
BseLI	CCNNNNNNNGG	2 cut(s)	172, 173
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	3 cut(s)	239, 344, 542
BseXI	GCAGC	2 cut(s)	132, 481
BshFI	GGCC	1 cut(s)	684
BshTI	ACCGGT	1 cut(s)	692
BshVI	ATCGAT	1 cut(s)	856
BsiSI	CCGG	2 cut(s)	581, 693
BslFI	GGGAC	3 cut(s)	221, 339, 515
BslI	CCNNNNNNNGG	2 cut(s)	172, 173
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	3 cut(s)	221, 339, 515
BsnI	GGCC	1 cut(s)	684
Bsp143I	GATC	4 cut(s)	48, 66, 243, 538
BspACI	CCGC	2 cut(s)	138, 594
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	1 cut(s)	592
BspDI	ATCGAT	1 cut(s)	856
BspLI	GGNNCC	1 cut(s)	556
BspMAI	CTGCAG	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	533
BspQI	GCTCTTC	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	692
BsrI	ACTGG	3 cut(s)	239, 344, 542
BssAI	RCCGGY	1 cut(s)	692
BssMI	GATC	4 cut(s)	48, 66, 243, 538
Bst4CI	ACNGT	7 cut(s)	103, 197, 316, 451, 457, 485, 736
Bst6I	CTCTTC	3 cut(s)	398, 409, 808
BstAPI	GCANNNNNTGC	1 cut(s)	696
BstDEI	CTNAG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	443, 667
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	4 cut(s)	51, 69, 246, 541
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	4 cut(s)	48, 66, 243, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 486, 602, 696
BstNSI	RCATGY	2 cut(s)	225, 792
BstSFI	CTRYAG	2 cut(s)	118, 621
BstV1I	GCAGC	2 cut(s)	132, 481
Bsu15I	ATCGAT	1 cut(s)	856
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	684
BsuTUI	ATCGAT	1 cut(s)	856
BtgZI	GCGATG	1 cut(s)	475
BtsCI	GGATG	2 cut(s)	443, 667
BtsIMutI	CAGTG	2 cut(s)	108, 246
BveI	ACCTGC	1 cut(s)	143
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	692
ClaI	ATCGAT	1 cut(s)	856
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	294, 433
CspAI	ACCGGT	1 cut(s)	692
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	4 cut(s)	222, 250, 280, 789
CviJI	RGCY	9 cut(s)	123, 230, 412, 521, 557, 605, 684, 801, 824
CviKI_1	RGCY	9 cut(s)	123, 230, 412, 521, 557, 605, 684, 801, 824
CviQI	GTAC	2 cut(s)	294, 433
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	4 cut(s)	50, 68, 245, 540
DpnII	GATC	4 cut(s)	48, 66, 243, 538
Eam1104I	CTCTTC	3 cut(s)	398, 409, 808
EarI	CTCTTC	3 cut(s)	398, 409, 808
Eco32I	GATATC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	5, 804
EcoRI	GAATTC	3 cut(s)	4, 270, 746
EcoRV	GATATC	1 cut(s)	349
FaeI	CATG	4 cut(s)	225, 253, 283, 792
FaqI	GGGAC	3 cut(s)	221, 339, 515
FatI	CATG	4 cut(s)	221, 249, 279, 788
FauI	CCCGC	1 cut(s)	131
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	2 cut(s)	48, 243
Fnu4HI	GCNGC	2 cut(s)	121, 495
FokI	GGATG	2 cut(s)	450, 674
Fsp4HI	GCNGC	2 cut(s)	121, 495
FspBI	CTAG	2 cut(s)	327, 668
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	121, 495
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	2 cut(s)	581, 693
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	4 cut(s)	225, 253, 283, 792
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	34, 590
HpaII	CCGG	2 cut(s)	581, 693
HphI	GGTGA	2 cut(s)	238, 798
Hpy188I	TCNGA	3 cut(s)	269, 417, 601
Hpy188III	TCNNGA	2 cut(s)	275, 608
HpyCH4III	ACNGT	7 cut(s)	103, 197, 316, 451, 457, 485, 736
HpyCH4IV	ACGT	2 cut(s)	234, 420
HpyCH4V	TGCA	5 cut(s)	120, 441, 446, 480, 690
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 486, 602, 696
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	2 cut(s)	234, 420
Hsp92II	CATG	4 cut(s)	225, 253, 283, 792
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	2 cut(s)	48, 243
Kzo9I	GATC	4 cut(s)	48, 66, 243, 538
LguI	GCTCTTC	1 cut(s)	808
LmnI	GCTCC	4 cut(s)	141, 176, 554, 829
Lsp1109I	GCAGC	2 cut(s)	132, 481
LweI	GCATC	3 cut(s)	428, 498, 661
MaeI	CTAG	2 cut(s)	327, 668
MaeII	ACGT	2 cut(s)	234, 420
MaeIII	GTNAC	5 cut(s)	217, 451, 457, 544, 736
MalI	GATC	4 cut(s)	50, 68, 245, 540
MboI	GATC	4 cut(s)	48, 66, 243, 538
MboII	GAAGA	5 cut(s)	356, 385, 396, 768, 795
MfeI	CAATTG	2 cut(s)	77, 534
MluCI	AATT	9 cut(s)	4, 70, 77, 270, 466, 534, 656, 746, 871
MmeI	TCCRAC	1 cut(s)	839
MnlI	CCTC	6 cut(s)	37, 208, 246, 367, 389, 595
MseI	TTAA	2 cut(s)	525, 874
MspI	CCGG	2 cut(s)	581, 693
MunI	CAATTG	2 cut(s)	77, 534
MwoI	GCNNNNNNNGC	4 cut(s)	150, 486, 602, 696
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	4 cut(s)	48, 66, 243, 538
NlaIII	CATG	4 cut(s)	225, 253, 283, 792
NlaIV	GGNNCC	1 cut(s)	556
NmuCI	GTSAC	2 cut(s)	217, 457
NspI	RCATGY	2 cut(s)	225, 792
PciI	ACATGT	1 cut(s)	788
PciSI	GCTCTTC	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	34, 590
PinAI	ACCGGT	1 cut(s)	692
PkrI	GCNGC	2 cut(s)	122, 496
PscI	ACATGT	1 cut(s)	788
PshBI	ATTAAT	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	295, 434
RsaNI	GTAC	2 cut(s)	294, 433
SapI	GCTCTTC	1 cut(s)	808
SaqAI	TTAA	2 cut(s)	525, 874
SatI	GCNGC	2 cut(s)	121, 495
Sau3AI	GATC	4 cut(s)	48, 66, 243, 538
ScaI	AGTACT	1 cut(s)	295
SfaNI	GCATC	3 cut(s)	428, 498, 661
SfcI	CTRYAG	2 cut(s)	118, 621
Sse9I	AATT	9 cut(s)	4, 70, 77, 270, 466, 534, 656, 746, 871
SsiI	CCGC	2 cut(s)	138, 594
SspMI	CTAG	2 cut(s)	327, 668
TaaI	ACNGT	7 cut(s)	103, 197, 316, 451, 457, 485, 736
TaiI	ACGT	2 cut(s)	237, 423
TaqI	TCGA	5 cut(s)	65, 359, 381, 779, 856
TasI	AATT	9 cut(s)	4, 70, 77, 270, 466, 534, 656, 746, 871
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	34, 590
Tru1I	TTAA	2 cut(s)	525, 874
Tru9I	TTAA	2 cut(s)	525, 874
TscAI	CASTG	2 cut(s)	108, 246
TseFI	GTSAC	2 cut(s)	217, 457
TseI	GCWGC	2 cut(s)	120, 494
Tsp45I	GTSAC	2 cut(s)	217, 457
TspDTI	ATGAA	2 cut(s)	17, 762
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	2 cut(s)	108, 246
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	3 cut(s)	4, 270, 746
XceI	RCATGY	2 cut(s)	225, 792
XspI	CTAG	2 cut(s)	327, 668
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.