Rh2BG569000

PAN-like domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
78422197 .. 78423060
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG569000.1

Sequence Viewer

Length: 864 bp
ATGAAGATTAGCTTGAACAAACTGACTGGCCAACAAAGCTGCCTCACATCCTGGGCAACGCTTGATGATCCACGACCAGGAAAGTTCACCTTATGCATTGATCCTAAAGGGCTGCAGGCTTATATCTGGGAGGACAATAGTATTCAAAAATGGAGAATTGCTATGTACATTGGCAGAGACTCAAGAAGTGTCTTTGGAAATCCAGGTGGATCAGCCTTTTCCCTATCATACAACTTCGATGTTGATAAGGCTTATCTTACTTACAGTGTCTCGAATAGCTCACTGAAAATGAGGGTCTTGTTGAATCCTTCAGGGCAGATTGAGCTGCTGCTGTGGATCAGTAAAACTTGGTATCAACTGTGGAAGGCACCTGCTGATAACTGTGATTTTTATGATCGTTGCGGTCCATATGGTGCCTGTCGTAAAAATGAAAGCCTCTCATCACCGTGCAAGTGCTTGACAGGTTTTAAAGCCAAATTTTCAAACCAATGGGATATGCAGGATTGGTCCAGTGGCTGCGTTAGGGAAAAAGCATTGACATGTAGTAACGCAATGGAAGGGTACTTCTCAAAGTTAGAAGGGGTGAAACTACCAGATCATTCTGTTATTTTTGAGGATAGGAGTAAGGATGAGTGCAACTCCGAATGTCATCAGAGTTGTTCTTGCACGGCTTATGCTTATGTAAATGCGACGGAAGGAAGTAATACTGGGACGTGTATGCAATGGTTTAGTGACTTAATCGATCTAGTAGAGAATTATGATATTATTACTACACATGATATTTTCATTCGCGTTCATGACTCCAAACTAGGTATATTTGGTTTGTTTTACTTTATTGGAGATATCATTATTTTCATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

287

Amino Acids

32.55

Weight (kDa)

5.62

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 79 - 159 1.8e-20 S-locus glycoprotein domain
PAN_2 PF08276 186 - 249 7.4e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 379
Acc36I ACCTGC 1 cut(s) 379
AccB1I GGYRCC 2 cut(s) 367, 413
AccII CGCG 1 cut(s) 792
AciI CCGC 1 cut(s) 402
AclWI GGATC 4 cut(s) 62, 95, 217, 344
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 2 cut(s) 167, 563
AfiI CCNNNNNNNGG 1 cut(s) 77
AflIII ACRYGT 2 cut(s) 539, 713
AgsI TTSAA 4 cut(s) 16, 146, 304, 483
AjiI CACGTC 1 cut(s) 714
AjnI CCWGG 3 cut(s) 50, 76, 202
AluBI AGCT 4 cut(s) 12, 39, 279, 325
AluI AGCT 4 cut(s) 12, 39, 279, 325
Alw26I GTCTC 2 cut(s) 171, 274
AlwI GGATC 4 cut(s) 62, 95, 217, 344
AlwNI CAGNNNCTG 1 cut(s) 516
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 5 cut(s) 39, 112, 325, 328, 516
ApoI RAATTY 1 cut(s) 476
AspS9I GGNCC 2 cut(s) 404, 507
AsuHPI GGTGA 3 cut(s) 79, 435, 595
AvaII GGWCC 2 cut(s) 404, 507
BalI TGGCCA 1 cut(s) 30
BanI GGYRCC 2 cut(s) 367, 413
BbvI GCAGC 5 cut(s) 26, 99, 312, 315, 503
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 3 cut(s) 52, 78, 204
BcoDI GTCTC 2 cut(s) 171, 274
BfaI CTAG 2 cut(s) 746, 809
BfmI CTRYAG 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 5 cut(s) 40, 113, 326, 329, 517
BlsI GCNGC 5 cut(s) 41, 114, 327, 330, 518
Bme1390I CCNGG 3 cut(s) 52, 78, 204
Bme18I GGWCC 2 cut(s) 404, 507
BmgBI CACGTC 1 cut(s) 714
BmgT120I GGNCC 2 cut(s) 404, 507
BmiI GGNNCC 2 cut(s) 369, 415
BmrFI CCNGG 3 cut(s) 52, 78, 204
BmrI ACTGGG 1 cut(s) 717
BmuI ACTGGG 1 cut(s) 717
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpuEI CTTGAG 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 3 cut(s) 31, 510, 712
Bse3DI GCAATG 2 cut(s) 558, 728
BseBI CCWGG 3 cut(s) 52, 78, 204
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 47, 634
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 2 cut(s) 558, 728
BseNI ACTGG 3 cut(s) 31, 510, 712
BseXI GCAGC 5 cut(s) 26, 99, 312, 315, 503
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 2 cut(s) 367, 413
BshVI ATCGAT 1 cut(s) 741
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 171, 274
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 7 cut(s) 67, 100, 209, 336, 394, 595, 742
BspACI CCGC 1 cut(s) 402
BspANI GGCC 1 cut(s) 30
BspDI ATCGAT 1 cut(s) 741
BspFNI CGCG 1 cut(s) 792
BspHI TCATGA 1 cut(s) 796
BspLI GGNNCC 2 cut(s) 369, 415
BspMAI CTGCAG 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 4 cut(s) 62, 95, 217, 344
BspT107I GGYRCC 2 cut(s) 367, 413
BsrDI GCAATG 2 cut(s) 558, 728
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 3 cut(s) 31, 510, 712
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 7 cut(s) 67, 100, 209, 336, 394, 595, 742
Bst2UI CCWGG 3 cut(s) 52, 78, 204
Bst4CI ACNGT 4 cut(s) 266, 360, 383, 447
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 117
BstF5I GGATG 2 cut(s) 47, 634
BstFNI CGCG 1 cut(s) 792
BstKTI GATC 7 cut(s) 70, 103, 212, 339, 397, 598, 745
BstMAI GTCTC 2 cut(s) 171, 274
BstMBI GATC 7 cut(s) 67, 100, 209, 336, 394, 595, 742
BstMWI GCNNNNNNNGC 2 cut(s) 36, 322
BstNI CCWGG 3 cut(s) 52, 78, 204
BstNSI RCATGY 1 cut(s) 543
BstSCI CCNGG 3 cut(s) 50, 76, 202
BstSFI CTRYAG 1 cut(s) 113
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 5 cut(s) 26, 99, 312, 315, 503
Bsu15I ATCGAT 1 cut(s) 741
BsuRI GGCC 1 cut(s) 30
BsuTUI ATCGAT 1 cut(s) 741
BtrI CACGTC 1 cut(s) 714
BtsCI GGATG 2 cut(s) 47, 634
BtsIMutI CAGTG 3 cut(s) 271, 281, 517
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 516
CciI TCATGA 1 cut(s) 796
Cfr13I GGNCC 2 cut(s) 404, 507
ClaI ATCGAT 1 cut(s) 741
Csp6I GTAC 2 cut(s) 166, 562
CviAII CATG 4 cut(s) 540, 776, 797, 856
CviQI GTAC 2 cut(s) 166, 562
DpnI GATC 7 cut(s) 69, 102, 211, 338, 396, 597, 744
DpnII GATC 7 cut(s) 67, 100, 209, 336, 394, 595, 742
DraI TTTAAA 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 28
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 2 cut(s) 404, 507
Eco57I CTGAAG 1 cut(s) 294
EcoRII CCWGG 3 cut(s) 50, 76, 202
EcoRV GATATC 1 cut(s) 844
EcoT22I ATGCAT 1 cut(s) 98
FaeI CATG 4 cut(s) 543, 779, 800, 859
FalI AAGNNNNNCTT 3 cut(s) 28, 74, 106
FaqI GGGAC 1 cut(s) 724
FatI CATG 4 cut(s) 539, 775, 796, 855
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 40, 113, 326, 329, 517
FokI GGATG 2 cut(s) 34, 641
Fsp4HI GCNGC 5 cut(s) 40, 113, 326, 329, 517
FspBI CTAG 2 cut(s) 746, 809
GluI GCNGC 5 cut(s) 40, 113, 326, 329, 517
HaeIII GGCC 1 cut(s) 30
Hin1II CATG 4 cut(s) 543, 779, 800, 859
HinfI GANTC 3 cut(s) 179, 304, 800
HphI GGTGA 3 cut(s) 79, 435, 595
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 643, 654
Hpy188III TCNNGA 3 cut(s) 183, 271, 797
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 694
HpyAV CCTTC 5 cut(s) 318, 358, 551, 572, 689
HpyCH4III ACNGT 4 cut(s) 266, 360, 383, 447
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 7 cut(s) 96, 115, 450, 499, 636, 666, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 322
HpySE526I ACGT 1 cut(s) 713
Hsp92II CATG 4 cut(s) 543, 779, 800, 859
Kzo9I GATC 7 cut(s) 67, 100, 209, 336, 394, 595, 742
Lsp1109I GCAGC 5 cut(s) 26, 99, 312, 315, 503
MaeI CTAG 2 cut(s) 746, 809
MaeII ACGT 1 cut(s) 713
MaeIII GTNAC 2 cut(s) 545, 731
MalI GATC 7 cut(s) 69, 102, 211, 338, 396, 597, 744
MboI GATC 7 cut(s) 67, 100, 209, 336, 394, 595, 742
MboII GAAGA 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 3 cut(s) 156, 476, 754
MluNI TGGCCA 1 cut(s) 30
MlyI GAGTC 2 cut(s) 173, 794
MnlI CCTC 5 cut(s) 53, 124, 285, 446, 607
Mox20I TGGCCA 1 cut(s) 30
Mph1103I ATGCAT 1 cut(s) 98
MscI TGGCCA 1 cut(s) 30
MseI TTAA 3 cut(s) 468, 737, 862
MslI CAYNNNNRTG 2 cut(s) 445, 538
Msp20I TGGCCA 1 cut(s) 30
MspR9I CCNGG 3 cut(s) 52, 78, 204
MvaI CCWGG 3 cut(s) 52, 78, 204
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 2 cut(s) 36, 322
NdeI CATATG 1 cut(s) 409
NdeII GATC 7 cut(s) 67, 100, 209, 336, 394, 595, 742
NlaIII CATG 4 cut(s) 543, 779, 800, 859
NlaIV GGNNCC 2 cut(s) 369, 415
NmuCI GTSAC 1 cut(s) 731
NsiI ATGCAT 1 cut(s) 98
NspI RCATGY 1 cut(s) 543
PagI TCATGA 1 cut(s) 796
PaqCI CACCTGC 1 cut(s) 379
PciI ACATGT 1 cut(s) 539
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 5 cut(s) 41, 114, 327, 330, 518
PleI GAGTC 2 cut(s) 173, 794
PpsI GAGTC 2 cut(s) 173, 794
PscI ACATGT 1 cut(s) 539
Psp6I CCWGG 3 cut(s) 50, 76, 202
PspGI CCWGG 3 cut(s) 50, 76, 202
PspN4I GGNNCC 2 cut(s) 369, 415
PspPI GGNCC 2 cut(s) 404, 507
PstI CTGCAG 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 516
RsaI GTAC 2 cut(s) 167, 563
RsaNI GTAC 2 cut(s) 166, 562
RseI CAYNNNNRTG 2 cut(s) 445, 538
SaqAI TTAA 3 cut(s) 468, 737, 862
SatI GCNGC 5 cut(s) 40, 113, 326, 329, 517
Sau3AI GATC 7 cut(s) 67, 100, 209, 336, 394, 595, 742
Sau96I GGNCC 2 cut(s) 404, 507
SchI GAGTC 2 cut(s) 173, 794
ScrFI CCNGG 3 cut(s) 52, 78, 204
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 2 cut(s) 404, 507
SmiMI CAYNNNNRTG 2 cut(s) 445, 538
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 3 cut(s) 156, 476, 754
SsiI CCGC 1 cut(s) 402
SspMI CTAG 2 cut(s) 746, 809
StyD4I CCNGG 3 cut(s) 50, 76, 202
TaaI ACNGT 4 cut(s) 266, 360, 383, 447
TaiI ACGT 1 cut(s) 716
TaqI TCGA 3 cut(s) 237, 272, 741
TasI AATT 3 cut(s) 156, 476, 754
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 3 cut(s) 468, 737, 862
Tru9I TTAA 3 cut(s) 468, 737, 862
TscAI CASTG 3 cut(s) 271, 288, 517
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 5 cut(s) 39, 112, 325, 328, 516
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 5 cut(s) 17, 444, 775, 785, 844
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 3 cut(s) 271, 288, 517
VpaK11BI GGWCC 2 cut(s) 404, 507
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 543
XspI CTAG 2 cut(s) 746, 809
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.