Rh4DG127800

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
20949589 .. 20964478
14890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG127800.1

Sequence Viewer

Length: 912 bp
ATGAAATTGATTGGGCTTTTGTTGGTGTTTCTCTCACTACTTTCTCTCTCTACTGCTCAATCTCCAAATACAATTACCAACAGAACAACATGCCCCATTGATCTCAGCTATGTCCTTAGAATCCCCTTCAACTCTTCATCATGCAAAAATTTCCAAGCCCCTCCTAGAACCCCTCAAATGGACAGGACCAATATATCATGTTGTCAAACCCTATTGTCTCTCTTTGGCATAGGCCTTGCTCAACACCTCAAGGCCACCACTCTTTTCCATCTCCCCAACATAGCAGCCTCAAATTCTTGCCTCCAAAACTACCAGTCCAAGCTTACCTCTCTAGCACTCCCTTCCAATCTTGTCTCTTATTGTTTTGACCCTTTACAATTTGTAACTAGCCCCAATTTCTGTGCGCAGATTGAGTCTACCCAAGATTGGGTCTCCAAGCTTAATCAGACCACTGCACTTGACTCTGCATGCAAGCCAGACCTCACTAATCTCTCATCCTGTGATGCTTGCGTAGCGGCTGGCTTTAAAATTCATACACAATTAAAAGCCGTTGATGGTAACAGTTCTCACTCTAGAGATTGTTGGTACTTTACAATTCTGTATGCAGCAGCTGGTATGATCAACGACTCTGAACCTGAAAGTGAGGGTGCCGTATCTTGTATTTTCGGTTTATCTTTATTGAATGACACTCTTGTGGGTTTGCGTAAAAAGAGCTATACCGCTCTTGTAACTGCAGTAGTCTCAGCAACAGGAGGGTTGCTTACAATATTATTTTTATACTTCTTATGGAAGAAGTCTTTGGGAAAGAAAAGATCCTTCTGCGTTGAAATTTCAGAGGCTGAGAACGAGAATGTTTTTTTGGTCATAAAGAACGAGAATGTTAGGTATACTGCTGGTAAGACGAGTGCCTAG

Protein Analysis

303

Amino Acids

33.03

Weight (kDa)

8.38

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 27 - 194 8.2e-42 SPARK
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 722
AccI GTMKAC 2 cut(s) 416, 887
AciI CCGC 2 cut(s) 515, 720
AclWI GGATC 1 cut(s) 807
AcsI RAATTY 4 cut(s) 148, 292, 528, 828
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 3 cut(s) 178, 426, 427
AgsI TTSAA 3 cut(s) 130, 682, 827
AjuI GAANNNNNNNTTGG 4 cut(s) 782, 814, 842, 874
AleI CACNNNNGTG 1 cut(s) 692
AluBI AGCT 5 cut(s) 108, 322, 439, 611, 714
AluI AGCT 5 cut(s) 108, 322, 439, 611, 714
Alw26I GTCTC 4 cut(s) 222, 358, 436, 745
AlwI GGATC 1 cut(s) 807
AlwNI CAGNNNCTG 2 cut(s) 611, 839
AoxI GGCC 2 cut(s) 232, 252
ApeKI GCWGC 3 cut(s) 284, 605, 608
ApoI RAATTY 4 cut(s) 148, 292, 528, 828
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 186
AvaII GGWCC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 647
BbvI GCAGC 3 cut(s) 296, 617, 620
BccI CCATC 2 cut(s) 276, 548
BceAI ACGGC 2 cut(s) 533, 635
BclI TGATCA 1 cut(s) 618
BcoDI GTCTC 4 cut(s) 222, 358, 436, 745
BfaI CTAG 5 cut(s) 165, 332, 387, 573, 910
BfmI CTRYAG 1 cut(s) 732
BisI GCNGC 4 cut(s) 285, 516, 606, 609
BlsI GCNGC 4 cut(s) 286, 517, 607, 610
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 649
BmsI GCATC 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 436
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 426, 427
Bse1I ACTGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 3 cut(s) 178, 426, 427
BseMII CTCAG 3 cut(s) 118, 756, 831
BseNI ACTGG 1 cut(s) 313
BseXI GCAGC 3 cut(s) 296, 617, 620
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 2 cut(s) 234, 254
BshNI GGYRCC 1 cut(s) 647
BslI CCNNNNNNNGG 3 cut(s) 178, 426, 427
BsmAI GTCTC 4 cut(s) 222, 358, 436, 745
BsnI GGCC 2 cut(s) 234, 254
Bso31I GGTCTC 1 cut(s) 436
Bsp143I GATC 3 cut(s) 100, 618, 812
BspACI CCGC 2 cut(s) 515, 720
BspANI GGCC 2 cut(s) 234, 254
BspCNI CTCAG 3 cut(s) 117, 755, 832
BspLI GGNNCC 1 cut(s) 649
BspMAI CTGCAG 1 cut(s) 736
BspPI GGATC 1 cut(s) 807
BspT107I GGYRCC 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 436
BsrBI CCGCTC 1 cut(s) 722
BsrI ACTGG 1 cut(s) 313
BssMI GATC 3 cut(s) 100, 618, 812
BssNAI GTATAC 1 cut(s) 888
Bst1107I GTATAC 1 cut(s) 888
Bst4CI ACNGT 1 cut(s) 563
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 469, 473, 508, 520
BstDEI CTNAG 4 cut(s) 104, 116, 742, 840
BstF5I GGATG 1 cut(s) 494
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 3 cut(s) 103, 621, 815
BstMAI GTCTC 4 cut(s) 222, 358, 436, 745
BstMBI GATC 3 cut(s) 100, 618, 812
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNSI RCATGY 2 cut(s) 93, 471
BstSFI CTRYAG 1 cut(s) 732
BstV1I GCAGC 3 cut(s) 296, 617, 620
BstX2I RGATCY 1 cut(s) 812
BstYI RGATCY 1 cut(s) 812
BstZ17I GTATAC 1 cut(s) 888
BsuRI GGCC 2 cut(s) 234, 254
BtsCI GGATG 1 cut(s) 494
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 4 cut(s) 469, 473, 508, 520
CaiI CAGNNNCTG 2 cut(s) 611, 839
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 586
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 4 cut(s) 90, 141, 198, 468
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 4 cut(s) 104, 116, 742, 840
DpnI GATC 3 cut(s) 102, 620, 814
DpnII GATC 3 cut(s) 100, 618, 812
DraI TTTAAA 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 186
FaeI CATG 4 cut(s) 93, 144, 201, 471
FatI CATG 4 cut(s) 89, 140, 197, 467
FbaI TGATCA 1 cut(s) 618
FblI GTMKAC 2 cut(s) 416, 887
Fnu4HI GCNGC 4 cut(s) 285, 516, 606, 609
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 285, 516, 606, 609
FspBI CTAG 5 cut(s) 165, 332, 387, 573, 910
FspI TGCGCA 1 cut(s) 405
GlaI GCGC 1 cut(s) 405
GluI GCNGC 4 cut(s) 285, 516, 606, 609
HaeIII GGCC 2 cut(s) 234, 254
HhaI GCGC 1 cut(s) 406
Hin1II CATG 4 cut(s) 93, 144, 201, 471
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HindIII AAGCTT 2 cut(s) 320, 437
HinfI GANTC 4 cut(s) 120, 413, 461, 626
Hpy166II GTNNAC 2 cut(s) 417, 888
Hpy188I TCNGA 3 cut(s) 447, 631, 835
Hpy188III TCNNGA 1 cut(s) 573
Hpy8I GTNNAC 2 cut(s) 417, 888
HpyAV CCTTC 3 cut(s) 136, 351, 826
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4V TGCA 6 cut(s) 144, 455, 467, 471, 605, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 4 cut(s) 104, 116, 742, 840
Hsp92II CATG 4 cut(s) 93, 144, 201, 471
HspAI GCGC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 3 cut(s) 100, 618, 812
LpnPI CCDG 9 cut(s) 169, 326, 489, 504, 511, 597, 648, 735, 879
Lsp1109I GCAGC 3 cut(s) 296, 617, 620
LweI GCATC 1 cut(s) 493
MaeI CTAG 5 cut(s) 165, 332, 387, 573, 910
MaeIII GTNAC 3 cut(s) 382, 557, 727
MalI GATC 3 cut(s) 102, 620, 814
MbiI CCGCTC 1 cut(s) 722
MboI GATC 3 cut(s) 100, 618, 812
MboII GAAGA 2 cut(s) 126, 802
MflI RGATCY 1 cut(s) 812
MlyI GAGTC 3 cut(s) 422, 455, 620
MseI TTAA 3 cut(s) 441, 525, 542
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 611
MwoI GCNNNNNNNGC 1 cut(s) 512
NdeII GATC 3 cut(s) 100, 618, 812
NlaIII CATG 4 cut(s) 93, 144, 201, 471
NlaIV GGNNCC 1 cut(s) 649
NsbI TGCGCA 1 cut(s) 405
NspI RCATGY 2 cut(s) 93, 471
OliI CACNNNNGTG 1 cut(s) 692
PaeI GCATGC 1 cut(s) 471
PceI AGGCCT 1 cut(s) 234
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 4 cut(s) 286, 517, 607, 610
PleI GAGTC 3 cut(s) 421, 455, 620
PpsI GAGTC 3 cut(s) 421, 455, 620
PspN4I GGNNCC 1 cut(s) 649
PspPI GGNCC 1 cut(s) 186
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 2 cut(s) 611, 839
PsuI RGATCY 1 cut(s) 812
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 1 cut(s) 692
SaqAI TTAA 3 cut(s) 441, 525, 542
SatI GCNGC 4 cut(s) 285, 516, 606, 609
Sau3AI GATC 3 cut(s) 100, 618, 812
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 3 cut(s) 422, 455, 620
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SphI GCATGC 1 cut(s) 471
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 2 cut(s) 515, 720
SspI AATATT 1 cut(s) 768
SspMI CTAG 5 cut(s) 165, 332, 387, 573, 910
StuI AGGCCT 1 cut(s) 234
TaaI ACNGT 1 cut(s) 563
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 3 cut(s) 441, 525, 542
Tru9I TTAA 3 cut(s) 441, 525, 542
TscAI CASTG 1 cut(s) 457
TseI GCWGC 3 cut(s) 284, 605, 608
TspDTI ATGAA 3 cut(s) 17, 126, 521
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 4 cut(s) 148, 292, 528, 828
XbaI TCTAGA 1 cut(s) 572
XceI RCATGY 2 cut(s) 93, 471
XmiI GTMKAC 2 cut(s) 416, 887
XspI CTAG 5 cut(s) 165, 332, 387, 573, 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.