RH6DG111400

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0000114
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG111400.1

Sequence Viewer

Length: 2712 bp
ATGAATTCCTTTGTGCTATTCCAGTCCTCATTGATTCTTTTTCTTTTGATCACTCCGTCGATCAATTTCCAATTAAGTGTGCGCGCCGATGATGCAGTGGAATATTATGCCAACTGCAGCCAACCTATTACCTGCGGAAGTGTCAAAAGCAAAATCTCTTACCCCTTTTGGGGAGCGAACCGAGCCGAATACTGTGGCAAATCTGGGTTTGAGGTCACATGCGAAGCCAACGTCCCAATGATCACCATGACGAATATCAAGTTCAGAATTCTTGACATGAGCAATAGTAGTACTGCAACAAATGCTACTGTAAAAGTGGCTAGGCAGGATTACTGGGAAGTTATCTGTCCCTCGACATATGTTTCAACAACCCTCGACTTCTCTCTCTTCGCATACTCTTCTGGGCTGAAGAACGTGTCTTTTTTGTACGGATGCGATACAACCACAGGAGCATACCCTGTGTTTCACTGCAACAGTAGCGTCACTGCTACCTATCTCACACAGACGAGAGGTACGACAGCTGGTAGTATAGTTTATCCAGTTCCTAAGGGCTGTCAATATGAGGTTTTGGTTCCGGTATTTGAATCCGCTTCTGAGGCTCTGGACAGAAATACTACTGATATTGAGACTGCGATAGATGGTGGTTTTGAATTGGATGTGCTAAATGCTGATACTGGCCTCTGCAGCAATTGCTTGGCATCAGGGGGAGTTTGTGGGCAAAGCAATACTAGTGCCAACGAATTCATGTGCTTTTGCCAGACTAATTCATCTTCGACAACCACATGTACTGAGAGCTCTTCACCCGCTCCAGTGGAATATGCGAACTGCAACCAACCTATTACCTGCGGGAGTGTCATGAGCAACATCTCTTACCCCTTTTGGGGAGCGAACCGAGCCGATTACTGTGGCAAATTTGGGTTCGAGGTCACATGCCAAGACGATGTCCCGATGATCAGCATGCAGAAAATCAATTTCAGAATTCTTGACATGAGGAATAGCACTACTATACCAACTCCGACTGTGACAGTTGCAAGGGAGGATTATTGGAACACTCTCTTTCCTGAGAGTTATATTGACACAAACCTCAACTTCTCTCTGTTTGATTACGCATCTGGGCCTCAAAACGTGTCTTTTTACTACGGATGCAGTTGGACTGCAACTCGACTGATTTCAGATTTAGGATATAATTATTCTAGTATCTCGCTTGAAGGCAATTCTGCCGTCAATGTTACCTTTCTCACAGAGAAACAAACTGCTAAGCTTTGGGATAAAATTCCCTTTCTCACCGTTTCCTGTGAAAAAGTGATTTTGGTTCCGGTGTCTGAGGCAGCTGCTGATGCTCTTGACAACAATCAAACATCAACCATCCAGAATGCGGTAAATGGTGGTTTTGAATTGAATGTGAAGAATGATGATACTGGTCTTTGCAACAATTGCGTGGGCTCAGGAGGATTTTGTGGGCAAAACACTACTAATGCTCAGTTCATTTGCTATTGCCCGAATTTAAATTCAACAGGCACATGTACTTCAAATTTGTCCGGTTCATCATCAGGTAGAAAGCGAACCATTGTAATCGCAACAGTCTCAGCAACAGCAGGGTTGCTTGCTATAGTTTTTGGCTATTTTTTATGGAAGAAAACACTGGGAAAGAGAAGTGAAACTATAAAGTATGTTAGTGCTGCTGGTGTGGAGAATGATACAGAACTACCACTATTCAGTTTGAGGAGTATATTAGTAGCTACTAATAACTTCTCTGAAGCGAATAAACTAGGAGAGGGAGGATTCGGCCCTGTTTATAAGGGGATTTTGCCTGAAAATCAAGAAGTAGCCATAAAAAGGCTATCAAAGAAGTCCGGACAAGGACAACAGGAGTTCATGAATGAGTTGAAGCTTATAGCGAAGCTCCAACATACCAACCTTGTTAGACTCTTGGGTTGCTGCACTGAAGCAGAGGAAATGATGTTGATTTATGAGTACATGCCCAATCGAAGTTTGGACAAATTTCTGTTTGATCCATCCGAAAAGACAAAATTGGACTGGGATAGACGTTTAAGAATTATAGAAGGTACAGCTCAAGGATTGCTTTATATACACAAGTACTCAAGATTAAAAATCATTCACAGGGATCTAAAAGCAAGTAATATTCTATTGGATGGAACAATGAACCCCAAGATTTCTGACTTTGGAATGGCAAAGATTTTTGACATAAATCAAACTGAAGCAAATACAAACAGGGTTGTTGGGACCTACGGCTACATGTCACCTGAGTATGCACGTTATGGTCATTTCTCTGAGAAATCGGATGTCTTTAGTTTTGGAGTTTTGTTGTTGGAGATTGTAAGTGGAAAGAAAAATTCTAGTTTCTATCGTTTTGAACGTTCACTGACTCTCGCTGGATGGGTATGGGACCTATGGAAAGAAGGAAGGGGAATAGAGGTGATTGATGCGTCAATAAGGGAAACATTACAGGCTCATGAGGCTTTAAGGTGTATCAATATAGGACTTTTGTGCGTTCAAGAATCTGCAGCTGATCGACCTGCAATGGCGTCAGTAATTCACATGTTGCAGGGAAATGAAGCTGCCTCTCTTCCACCTACCAAAGCACCTGCCTTTTCAACACAGACGAATTTCAGTACTATTGGTCCTTCTTCTCAAACACCTACCAATTATTCAAACAATGCACTCACGATTAGTTTGCCAGAAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

903

Amino Acids

99.11

Weight (kDa)

5.28

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 39 - 98 9e-13 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 177 - 253 1.2e-12 Wall-associated receptor kinase C-terminal
GUB_WAK_bind PF13947 276 - 334 2e-11 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 414 - 501 6.7e-16 Wall-associated receptor kinase C-terminal
Pkinase PF00069 585 - 784 1.2e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 587 - 854 9.3e-51 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1797
AarI CACCTGC 1 cut(s) 2614
Acc36I ACCTGC 4 cut(s) 140, 851, 2545, 2614
AccBSI CCGCTC 1 cut(s) 806
AccII CGCG 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 1853
AciI CCGC 5 cut(s) 135, 588, 804, 846, 1376
AclI AACGTT 1 cut(s) 2377
AclWI GGATC 2 cut(s) 2006, 2133
AcuI CTGAAG 4 cut(s) 428, 1776, 1965, 2238
AcyI GRCGYC 1 cut(s) 2546
AfaI GTAC 9 cut(s) 292, 428, 514, 787, 1525, 1976, 2068, 2099, 2635
AfiI CCNNNNNNNGG 6 cut(s) 169, 170, 880, 881, 1375, 1836
AflIII ACRYGT 6 cut(s) 414, 782, 1125, 1520, 2256, 2559
AhlI ACTAGT 1 cut(s) 728
Alw21I GWGCWC 1 cut(s) 797
Alw26I GTCTC 2 cut(s) 620, 1588
AlwI GGATC 2 cut(s) 2006, 2133
AlwNI CAGNNNCTG 1 cut(s) 1334
Aor13HI TCCGGA 1 cut(s) 1853
AoxI GGCC 3 cut(s) 676, 1115, 1786
ApeKI GCWGC 8 cut(s) 117, 684, 1328, 1331, 1679, 1938, 2525, 2579
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AspLEI GCGC 2 cut(s) 84, 86
AspS9I GGNCC 5 cut(s) 1115, 1787, 2244, 2407, 2642
AsuHPI GGTGA 5 cut(s) 235, 792, 1276, 2253, 2449
AvaII GGWCC 3 cut(s) 2244, 2407, 2642
AxyI CCTNAGG 1 cut(s) 546
BanII GRGCYC 2 cut(s) 797, 1445
Bbv12I GWGCWC 1 cut(s) 797
BbvI GCAGC 8 cut(s) 129, 696, 1318, 1340, 1666, 1925, 2537, 2566
BccI CCATC 5 cut(s) 632, 1373, 2023, 2147, 2391
BceAI ACGGC 2 cut(s) 1205, 2266
BcgI CGANNNNNNTGC 2 cut(s) 2677, 2711
BclI TGATCA 3 cut(s) 48, 240, 951
BcoDI GTCTC 2 cut(s) 620, 1588
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 5 cut(s) 321, 729, 1194, 1769, 2358
BfmI CTRYAG 4 cut(s) 115, 682, 1608, 2523
BfuAI ACCTGC 4 cut(s) 140, 851, 2545, 2614
BisI GCNGC 8 cut(s) 118, 685, 1329, 1332, 1680, 1939, 2526, 2580
BlpI GCTNAGC 1 cut(s) 1257
BlsI GCNGC 8 cut(s) 119, 686, 1330, 1333, 1681, 1940, 2527, 2581
BmcAI AGTACT 3 cut(s) 292, 2099, 2635
Bme18I GGWCC 3 cut(s) 2244, 2407, 2642
BmgT120I GGNCC 5 cut(s) 1115, 1787, 2244, 2407, 2642
BmiI GGNNCC 4 cut(s) 573, 1314, 2245, 2408
BmrI ACTGGG 3 cut(s) 343, 1652, 2047
BmsI GCATC 7 cut(s) 82, 422, 707, 1118, 1133, 1327, 2434
BmuI ACTGGG 3 cut(s) 343, 1652, 2047
BpmI CTGGAG 1 cut(s) 792
Bpu10I CCTNAGC 1 cut(s) 1444
Bpu1102I GCTNAGC 1 cut(s) 1257
BpuEI CTTGAG 2 cut(s) 2058, 2086
BsaHI GRCGYC 1 cut(s) 2546
BsaWI WCCGGW 4 cut(s) 574, 1315, 1538, 1853
Bsc4I CCNNNNNNNGG 6 cut(s) 169, 170, 880, 881, 1375, 1836
Bse1I ACTGG 8 cut(s) 22, 338, 539, 679, 809, 1423, 1647, 2042
Bse21I CCTNAGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 2547
BseAI TCCGGA 1 cut(s) 1853
BseGI GGATG 8 cut(s) 437, 661, 1148, 1365, 2015, 2158, 2308, 2402
BseLI CCNNNNNNNGG 6 cut(s) 169, 170, 880, 881, 1375, 1836
BseMI GCAATG 1 cut(s) 2547
BseMII CTCAG 9 cut(s) 585, 780, 1053, 1314, 1458, 1493, 1599, 2256, 2283
BseNI ACTGG 8 cut(s) 22, 338, 539, 679, 809, 1423, 1647, 2042
BsePI GCGCGC 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 1738
BseXI GCAGC 8 cut(s) 129, 696, 1318, 1340, 1666, 1925, 2537, 2566
BsgI GTGCAG 1 cut(s) 1924
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 3 cut(s) 678, 1117, 1788
BsiHKAI GWGCWC 1 cut(s) 797
BsiSI CCGG 4 cut(s) 575, 1316, 1539, 1854
BslFI GGGAC 5 cut(s) 218, 333, 929, 2257, 2420
BslI CCNNNNNNNGG 6 cut(s) 169, 170, 880, 881, 1375, 1836
BsmAI GTCTC 2 cut(s) 620, 1588
BsmFI GGGAC 5 cut(s) 218, 333, 929, 2257, 2420
BsmI GAATGC 1 cut(s) 1378
BsnI GGCC 3 cut(s) 678, 1117, 1788
Bsp1286I GDGCHC 2 cut(s) 797, 1445
Bsp13I TCCGGA 1 cut(s) 1853
Bsp143I GATC 7 cut(s) 48, 60, 240, 951, 2011, 2125, 2530
Bsp1720I GCTNAGC 1 cut(s) 1257
BspACI CCGC 5 cut(s) 135, 588, 804, 846, 1376
BspANI GGCC 3 cut(s) 678, 1117, 1788
BspCNI CTCAG 9 cut(s) 586, 781, 1054, 1315, 1457, 1492, 1598, 2257, 2284
BspEI TCCGGA 1 cut(s) 1853
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 3 cut(s) 855, 1875, 2473
BspLI GGNNCC 4 cut(s) 573, 1314, 2245, 2408
BspMAI CTGCAG 3 cut(s) 119, 686, 2527
BspMI ACCTGC 4 cut(s) 140, 851, 2545, 2614
BspPI GGATC 2 cut(s) 2006, 2133
BspQI GCTCTTC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 2547
BsrI ACTGG 8 cut(s) 22, 338, 539, 679, 809, 1423, 1647, 2042
BssHII GCGCGC 1 cut(s) 82
BssMI GATC 7 cut(s) 48, 60, 240, 951, 2011, 2125, 2530
BssNI GRCGYC 1 cut(s) 2546
Bst4CI ACNGT 8 cut(s) 194, 310, 476, 905, 1021, 1027, 1288, 1582
Bst6I CTCTTC 4 cut(s) 392, 403, 802, 2592
BstACI GRCGYC 1 cut(s) 2546
BstAPI GCANNNNNTGC 3 cut(s) 302, 690, 1434
BstC8I GCNNGC 3 cut(s) 84, 959, 1605
BstF5I GGATG 8 cut(s) 437, 661, 1148, 1365, 2015, 2158, 2308, 2402
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 2 cut(s) 84, 86
BstKTI GATC 7 cut(s) 51, 63, 243, 954, 2014, 2128, 2533
BstMAI GTCTC 2 cut(s) 620, 1588
BstMBI GATC 7 cut(s) 48, 60, 240, 951, 2011, 2125, 2530
BstNSI RCATGY 8 cut(s) 222, 786, 933, 961, 1524, 1981, 2260, 2563
BstSFI CTRYAG 4 cut(s) 115, 682, 1608, 2523
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 8 cut(s) 129, 696, 1318, 1340, 1666, 1925, 2537, 2566
BstX2I RGATCY 1 cut(s) 2125
BstYI RGATCY 1 cut(s) 2125
Bsu36I CCTNAGG 1 cut(s) 546
BsuRI GGCC 3 cut(s) 678, 1117, 1788
BtsCI GGATG 8 cut(s) 437, 661, 1148, 1365, 2015, 2158, 2308, 2402
BtsI GCAGTG 3 cut(s) 102, 466, 483
BtsIMutI CAGTG 7 cut(s) 102, 466, 483, 816, 1640, 1941, 2381
BveI ACCTGC 4 cut(s) 140, 851, 2545, 2614
Cac8I GCNNGC 3 cut(s) 84, 959, 1605
CaiI CAGNNNCTG 1 cut(s) 1334
CciI TCATGA 3 cut(s) 855, 1875, 2473
CfoI GCGC 2 cut(s) 84, 86
Cfr13I GGNCC 5 cut(s) 1115, 1787, 2244, 2407, 2642
CseI GACGC 3 cut(s) 469, 2436, 2535
Csp6I GTAC 9 cut(s) 291, 427, 513, 786, 1524, 1975, 2067, 2098, 2634
CviQI GTAC 9 cut(s) 291, 427, 513, 786, 1524, 1975, 2067, 2098, 2634
DpnI GATC 7 cut(s) 50, 62, 242, 953, 2013, 2127, 2532
DpnII GATC 7 cut(s) 48, 60, 240, 951, 2011, 2125, 2530
DraI TTTAAA 1 cut(s) 1506
Eam1104I CTCTTC 4 cut(s) 392, 403, 802, 2592
EarI CTCTTC 4 cut(s) 392, 403, 802, 2592
Ecl136II GAGCTC 1 cut(s) 795
Eco24I GRGCYC 2 cut(s) 797, 1445
Eco47I GGWCC 3 cut(s) 2244, 2407, 2642
Eco53kI GAGCTC 1 cut(s) 795
Eco57I CTGAAG 4 cut(s) 428, 1776, 1965, 2238
Eco81I CCTNAGG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 795
EcoO109I RGGNCCY 2 cut(s) 2244, 2407
EcoRI GAATTC 4 cut(s) 4, 267, 740, 978
EcoT38I GRGCYC 2 cut(s) 797, 1445
FalI AAGNNNNNCTT 2 cut(s) 2067, 2099
FaqI GGGAC 5 cut(s) 218, 333, 929, 2257, 2420
FauI CCCGC 2 cut(s) 811, 839
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 3 cut(s) 48, 240, 951
Fnu4HI GCNGC 8 cut(s) 118, 685, 1329, 1332, 1680, 1939, 2526, 2580
FokI GGATG 8 cut(s) 444, 668, 1155, 1352, 2002, 2165, 2315, 2409
FriOI GRGCYC 2 cut(s) 797, 1445
Fsp4HI GCNGC 8 cut(s) 118, 685, 1329, 1332, 1680, 1939, 2526, 2580
FspBI CTAG 5 cut(s) 321, 729, 1194, 1769, 2358
GlaI GCGC 2 cut(s) 83, 85
GluI GCNGC 8 cut(s) 118, 685, 1329, 1332, 1680, 1939, 2526, 2580
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 3 cut(s) 678, 1117, 1788
HapII CCGG 4 cut(s) 575, 1316, 1539, 1854
HgaI GACGC 3 cut(s) 469, 2436, 2535
HhaI GCGC 2 cut(s) 84, 86
Hin1I GRCGYC 1 cut(s) 2546
Hin6I GCGC 2 cut(s) 82, 84
HinP1I GCGC 2 cut(s) 82, 84
HindIII AAGCTT 2 cut(s) 1259, 1889
HinfI GANTC 6 cut(s) 34, 584, 1782, 1926, 2386, 2519
HpaII CCGG 4 cut(s) 575, 1316, 1539, 1854
HphI GGTGA 5 cut(s) 235, 792, 1276, 2253, 2449
Hpy166II GTNNAC 1 cut(s) 2381
Hpy8I GTNNAC 1 cut(s) 2381
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 5 cut(s) 1202, 2057, 2414, 2418, 2655
HpyCH4III ACNGT 8 cut(s) 194, 310, 476, 905, 1021, 1027, 1288, 1582
HpyCH4IV ACGT 6 cut(s) 231, 414, 1125, 2047, 2275, 2377
HpySE526I ACGT 6 cut(s) 231, 414, 1125, 2047, 2275, 2377
Hsp92I GRCGYC 1 cut(s) 2546
HspAI GCGC 2 cut(s) 82, 84
Kpn2I TCCGGA 1 cut(s) 1853
Ksp22I TGATCA 3 cut(s) 48, 240, 951
Kzo9I GATC 7 cut(s) 48, 60, 240, 951, 2011, 2125, 2530
LguI GCTCTTC 1 cut(s) 802
LmnI GCTCC 5 cut(s) 173, 449, 811, 884, 1908
Lsp1109I GCAGC 8 cut(s) 129, 696, 1318, 1340, 1666, 1925, 2537, 2566
LweI GCATC 7 cut(s) 82, 422, 707, 1118, 1133, 1327, 2434
MaeI CTAG 5 cut(s) 321, 729, 1194, 1769, 2358
MaeII ACGT 6 cut(s) 231, 414, 1125, 2047, 2275, 2377
MaeIII GTNAC 6 cut(s) 214, 481, 925, 1021, 1228, 2259
MalI GATC 7 cut(s) 50, 62, 242, 953, 2013, 2127, 2532
MbiI CCGCTC 1 cut(s) 806
MboI GATC 7 cut(s) 48, 60, 240, 951, 2011, 2125, 2530
MboII GAAGA 9 cut(s) 379, 390, 421, 762, 789, 1417, 1645, 2579, 2640
MfeI CAATTG 2 cut(s) 688, 1432
MflI RGATCY 1 cut(s) 2125
MhlI GDGCHC 2 cut(s) 797, 1445
MlyI GAGTC 2 cut(s) 1920, 2380
MmeI TCCRAC 4 cut(s) 1040, 1130, 1930, 2310
MroI TCCGGA 1 cut(s) 1853
MseI TTAA 5 cut(s) 74, 1505, 2051, 2108, 2483
MspA1I CMGCKG 3 cut(s) 521, 1331, 2528
MspI CCGG 4 cut(s) 575, 1316, 1539, 1854
MunI CAATTG 2 cut(s) 688, 1432
Mva1269I GAATGC 1 cut(s) 1378
MvnI CGCG 1 cut(s) 84
NdeI CATATG 1 cut(s) 358
NdeII GATC 7 cut(s) 48, 60, 240, 951, 2011, 2125, 2530
NlaIV GGNNCC 4 cut(s) 573, 1314, 2245, 2408
NmuCI GTSAC 5 cut(s) 214, 481, 925, 1021, 2259
NspI RCATGY 8 cut(s) 222, 786, 933, 961, 1524, 1981, 2260, 2563
PaeI GCATGC 1 cut(s) 961
PagI TCATGA 3 cut(s) 855, 1875, 2473
PaqCI CACCTGC 1 cut(s) 2614
PauI GCGCGC 1 cut(s) 82
PciI ACATGT 4 cut(s) 782, 1520, 2256, 2559
PciSI GCTCTTC 1 cut(s) 802
PcsI WCGNNNNNNNCGW 2 cut(s) 512, 2374
PctI GAATGC 1 cut(s) 1378
PfeI GAWTC 4 cut(s) 34, 584, 1782, 2519
PflFI GACNNNGTC 1 cut(s) 941
PkrI GCNGC 8 cut(s) 119, 686, 1330, 1333, 1681, 1940, 2527, 2581
PleI GAGTC 2 cut(s) 1920, 2380
PpsI GAGTC 2 cut(s) 1920, 2380
PpuMI RGGWCCY 2 cut(s) 2244, 2407
PscI ACATGT 4 cut(s) 782, 1520, 2256, 2559
PsiI TTATAA 1 cut(s) 1797
Psp124BI GAGCTC 1 cut(s) 797
Psp1406I AACGTT 1 cut(s) 2377
Psp5II RGGWCCY 2 cut(s) 2244, 2407
PspN4I GGNNCC 4 cut(s) 573, 1314, 2245, 2408
PspPI GGNCC 5 cut(s) 1115, 1787, 2244, 2407, 2642
PspPPI RGGWCCY 2 cut(s) 2244, 2407
PstI CTGCAG 3 cut(s) 119, 686, 2527
PstNI CAGNNNCTG 1 cut(s) 1334
PsuI RGATCY 1 cut(s) 2125
PsyI GACNNNGTC 1 cut(s) 941
PteI GCGCGC 1 cut(s) 82
PvuII CAGCTG 3 cut(s) 521, 1331, 2528
RsaI GTAC 9 cut(s) 292, 428, 514, 787, 1525, 1976, 2068, 2099, 2635
RsaNI GTAC 9 cut(s) 291, 427, 513, 786, 1524, 1975, 2067, 2098, 2634
SacI GAGCTC 1 cut(s) 797
SapI GCTCTTC 1 cut(s) 802
SaqAI TTAA 5 cut(s) 74, 1505, 2051, 2108, 2483
SatI GCNGC 8 cut(s) 118, 685, 1329, 1332, 1680, 1939, 2526, 2580
Sau3AI GATC 7 cut(s) 48, 60, 240, 951, 2011, 2125, 2530
Sau96I GGNCC 5 cut(s) 1115, 1787, 2244, 2407, 2642
ScaI AGTACT 3 cut(s) 292, 2099, 2635
SchI GAGTC 2 cut(s) 1920, 2380
SduI GDGCHC 2 cut(s) 797, 1445
SfaNI GCATC 7 cut(s) 82, 422, 707, 1118, 1133, 1327, 2434
SfcI CTRYAG 4 cut(s) 115, 682, 1608, 2523
SinI GGWCC 3 cut(s) 2244, 2407, 2642
SmiI ATTTAAAT 1 cut(s) 1506
SmlI CTYRAG 2 cut(s) 2073, 2101
SmoI CTYRAG 2 cut(s) 2073, 2101
SpeI ACTAGT 1 cut(s) 728
SphI GCATGC 1 cut(s) 961
SsiI CCGC 5 cut(s) 135, 588, 804, 846, 1376
SspI AATATT 2 cut(s) 104, 2143
SspMI CTAG 5 cut(s) 321, 729, 1194, 1769, 2358
SstI GAGCTC 1 cut(s) 797
SwaI ATTTAAAT 1 cut(s) 1506
TaaI ACNGT 8 cut(s) 194, 310, 476, 905, 1021, 1027, 1288, 1582
TaiI ACGT 6 cut(s) 234, 417, 1128, 2050, 2278, 2380
TaqI TCGA 9 cut(s) 59, 353, 375, 773, 921, 1162, 1987, 2533, 2707
TatI WGTACW 6 cut(s) 290, 785, 1523, 1974, 2097, 2633
TfiI GAWTC 4 cut(s) 34, 584, 1782, 2519
Tru1I TTAA 5 cut(s) 74, 1505, 2051, 2108, 2483
Tru9I TTAA 5 cut(s) 74, 1505, 2051, 2108, 2483
TscAI CASTG 7 cut(s) 102, 473, 490, 816, 1647, 1948, 2388
TseFI GTSAC 5 cut(s) 214, 481, 925, 1021, 2259
TseI GCWGC 8 cut(s) 117, 684, 1328, 1331, 1679, 1938, 2525, 2579
Tsp45I GTSAC 5 cut(s) 214, 481, 925, 1021, 2259
TspDTI ATGAA 9 cut(s) 17, 733, 756, 1474, 1533, 1864, 1892, 2177, 2589
TspGWI ACGGA 3 cut(s) 45, 444, 1155
TspRI CASTG 7 cut(s) 102, 473, 490, 816, 1647, 1948, 2388
Tth111I GACNNNGTC 1 cut(s) 941
VpaK11BI GGWCC 3 cut(s) 2244, 2407, 2642
XceI RCATGY 8 cut(s) 222, 786, 933, 961, 1524, 1981, 2260, 2563
XcmI CCANNNNNNNNNTGG 1 cut(s) 1990
XspI CTAG 5 cut(s) 321, 729, 1194, 1769, 2358
ZrmI AGTACT 3 cut(s) 292, 2099, 2635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.