Rroxscaffold_176G00431460

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
Physical Location & Seq
Forward (+)
1150700 .. 1151519
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431460.1

Sequence Viewer

Length: 630 bp
ATGACCAATAGCACTAATACACTAACTGCGACTGTGACAGTTGCAAGGGAGGATTATTGGAGAACTCTCTGTCCTGAGAGTTATATTGACACAAACCTCAACTTCTCTCTATTTGATTACGCATCTGGGCCTCAAAACGTGTCGTTTTACTATGGATGCAGTTCGACTTCGACTGCAACTTCAGCTTTGTCAATGTTAGGATATAATTTTTCTAGTGTGTCGCTGGAATGCAACGCTACCGTCACAGTTTCCTTTCTCACAGAGACGCAAATTGCTAAGCTTCTGGATGCATCTGCCTTGGCCTCCTGTCAACCTGTGGTTTTGGTTCCGGTGTCTGCGGCAGCTGCTGATGCGCTTGACAACAATCAAACATCAACTATCCAGAATGCGGTGGATGGTGGTTTTGAATTGAATGTGCAGAATGATGATACTGGTTTTTGCAACAATTGCGTGGCCTCAGGAGGAGTTTGTGGGCAAGATACTACTAATGCCAAGTTCATTTGCTATTGCCAGAATTTAAATTCCACAGAAACATGTACTTCAAATTCATCAACTCCAAATTCTTCCGGTTCATCATCAGCCATGGCTGCAGCCTGCATTCAGTCTGTGTTTTTGAAAGAAGAGGATTAA

Protein Analysis

209

Amino Acids

21.95

Weight (kDa)

4.05

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WAK_assoc PF14380 86 - 172 3.9e-16 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 338, 389
AcsI RAATTY 4 cut(s) 514, 520, 544, 559
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 538
AfiI CCNNNNNNNGG 1 cut(s) 388
AflIII ACRYGT 2 cut(s) 138, 533
AgsI TTSAA 4 cut(s) 407, 412, 543, 616
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 3 cut(s) 185, 280, 344
AluI AGCT 3 cut(s) 185, 280, 344
Alw26I GTCTC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 3 cut(s) 128, 300, 453
ApeKI GCWGC 4 cut(s) 341, 344, 587, 590
ApoI RAATTY 4 cut(s) 514, 520, 544, 559
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 457
BbvI GCAGC 4 cut(s) 331, 353, 574, 602
BccI CCATC 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 588
BisI GCNGC 5 cut(s) 339, 342, 345, 588, 591
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 5 cut(s) 340, 343, 346, 589, 592
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 5 cut(s) 131, 146, 277, 299, 340
Bpu1102I GCTNAGC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 297, 582
BsaWI WCCGGW 2 cut(s) 328, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 436
Bse21I CCTNAGG 1 cut(s) 457
BseDI CCNNGG 2 cut(s) 297, 582
BseGI GGATG 3 cut(s) 161, 292, 400
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 2 cut(s) 66, 471
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 477
BseXI GCAGC 4 cut(s) 331, 353, 574, 602
BsgI GTGCAG 1 cut(s) 437
BshFI GGCC 3 cut(s) 130, 302, 455
BsiSI CCGG 2 cut(s) 329, 567
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 257
BsmBI CGTCTC 1 cut(s) 257
BsmI GAATGC 3 cut(s) 233, 391, 597
BsnI GGCC 3 cut(s) 130, 302, 455
Bsp1720I GCTNAGC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 2 cut(s) 338, 389
BspANI GGCC 3 cut(s) 130, 302, 455
BspCNI CTCAG 2 cut(s) 67, 470
BspLI GGNNCC 1 cut(s) 327
BspMAI CTGCAG 1 cut(s) 592
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 297, 582
BssT1I CCWWGG 2 cut(s) 297, 582
Bst4CI ACNGT 4 cut(s) 34, 40, 241, 247
Bst6I CTCTTC 1 cut(s) 615
BstAPI GCANNNNNTGC 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 595
BstDEI CTNAG 3 cut(s) 75, 276, 457
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 3 cut(s) 161, 292, 400
BstHHI GCGC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 257
BstMWI GCNNNNNNNGC 5 cut(s) 182, 344, 350, 447, 587
BstNSI RCATGY 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 4 cut(s) 331, 353, 574, 602
Bsu36I CCTNAGG 1 cut(s) 457
BsuRI GGCC 3 cut(s) 130, 302, 455
BtgI CCRYGG 1 cut(s) 582
BtsCI GGATG 3 cut(s) 161, 292, 400
Cac8I GCNNGC 1 cut(s) 595
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 128
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 537
CviAII CATG 2 cut(s) 534, 583
CviJI RGCY 9 cut(s) 130, 185, 280, 302, 344, 455, 581, 587, 593
CviKI_1 RGCY 9 cut(s) 130, 185, 280, 302, 344, 455, 581, 587, 593
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 3 cut(s) 75, 276, 457
DraI TTTAAA 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco130I CCWWGG 2 cut(s) 297, 582
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 457
EcoT14I CCWWGG 2 cut(s) 297, 582
EcoT22I ATGCAT 1 cut(s) 292
ErhI CCWWGG 2 cut(s) 297, 582
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 2 cut(s) 537, 586
FaiI YATR 5 cut(s) 84, 153, 204, 535, 584
FatI CATG 2 cut(s) 533, 582
Fnu4HI GCNGC 5 cut(s) 339, 342, 345, 588, 591
FokI GGATG 3 cut(s) 168, 299, 407
Fsp4HI GCNGC 5 cut(s) 339, 342, 345, 588, 591
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 354
GluI GCNGC 5 cut(s) 339, 342, 345, 588, 591
HaeIII GGCC 3 cut(s) 130, 302, 455
HapII CCGG 2 cut(s) 329, 567
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 537, 586
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 278
HpaII CCGG 2 cut(s) 329, 567
Hpy166II GTNNAC 1 cut(s) 311
Hpy188III TCNNGA 4 cut(s) 74, 284, 382, 459
Hpy8I GTNNAC 1 cut(s) 311
HpyCH4III ACNGT 4 cut(s) 34, 40, 241, 247
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 9 cut(s) 44, 159, 176, 231, 290, 418, 441, 590, 597
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 344, 350, 447, 587
HpyF3I CTNAG 3 cut(s) 75, 276, 457
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 537, 586
HspAI GCGC 1 cut(s) 353
Lsp1109I GCAGC 4 cut(s) 331, 353, 574, 602
LweI GCATC 5 cut(s) 131, 146, 277, 299, 340
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 34, 241
MboII GAAGA 1 cut(s) 555
MfeI CAATTG 1 cut(s) 445
MluCI AATT 8 cut(s) 205, 270, 407, 445, 514, 520, 544, 559
MnlI CCTC 7 cut(s) 43, 107, 141, 313, 455, 466, 616
Mph1103I ATGCAT 1 cut(s) 292
MseI TTAA 2 cut(s) 518, 628
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 329, 567
MunI CAATTG 1 cut(s) 445
Mva1269I GAATGC 3 cut(s) 233, 391, 597
MwoI GCNNNNNNNGC 5 cut(s) 182, 344, 350, 447, 587
NcoI CCATGG 1 cut(s) 582
NlaIII CATG 2 cut(s) 537, 586
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 2 cut(s) 34, 241
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 1 cut(s) 537
PciI ACATGT 1 cut(s) 533
PctI GAATGC 3 cut(s) 233, 391, 597
PkrI GCNGC 5 cut(s) 340, 343, 346, 589, 592
PscI ACATGT 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 128
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
SaqAI TTAA 2 cut(s) 518, 628
SatI GCNGC 5 cut(s) 339, 342, 345, 588, 591
Sau96I GGNCC 1 cut(s) 128
SetI ASST 6 cut(s) 99, 141, 187, 282, 316, 346
SfaNI GCATC 5 cut(s) 131, 146, 277, 299, 340
SfcI CTRYAG 1 cut(s) 588
SmiI ATTTAAAT 1 cut(s) 519
Sse9I AATT 8 cut(s) 205, 270, 407, 445, 514, 520, 544, 559
SsiI CCGC 2 cut(s) 338, 389
SspMI CTAG 1 cut(s) 213
StyI CCWWGG 2 cut(s) 297, 582
SwaI ATTTAAAT 1 cut(s) 519
TaaI ACNGT 4 cut(s) 34, 40, 241, 247
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 164, 170
TasI AATT 8 cut(s) 205, 270, 407, 445, 514, 520, 544, 559
TatI WGTACW 1 cut(s) 536
TauI GCSGC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 518, 628
Tru9I TTAA 2 cut(s) 518, 628
TseFI GTSAC 2 cut(s) 34, 241
TseI GCWGC 4 cut(s) 341, 344, 587, 590
Tsp45I GTSAC 2 cut(s) 34, 241
TspDTI ATGAA 3 cut(s) 487, 537, 561
XapI RAATTY 4 cut(s) 514, 520, 544, 559
XceI RCATGY 1 cut(s) 537
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.