Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000114

Physical Location & Seq

Genomic Coordinates Reverse (-)

77922655 .. 77956156

Gene Structure 33502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG566000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCCACTGGTAGACTTGAGGTGCAAGTCTCAGATACGTTTGCAGACATTAGATTATGGAAGTGGGATTTTGGTCATACTGAAGGTGTTTTACCAGTAGCTCCTCTCTACCCAAATTTAGTGATGAAACTGATCATTGGGGTTTCGTTGATGTATCTCTCACTAATTGCTTTCCCTACCACCCAATCTCTAAATTCAACCTACACAACAACATGCCCCATGGATCTCAGTTATGTCCTTAGAATCCCCTTCAAATCTTCATCATGCAAAAACTTCCAAGCTCCTCCCAAAAACCCCGAAACCGACATCACCACAATCCCATGTTGTCAAACCCTCTTATCTCTCATTGCAATAGGCCTTGCCCAACACCTAAAAGACACTTCTCTTTTCCTACTCCCCGACATAGCCACTTCAATTACTTGCTTCCAAGATTTCCAGTCCAAGCTCACCTCTCTCTCCCTCCCTTCCTCTATTGTGCCTTATTGTTTTGACCCTATACTATATGTCACCAACCCCAATGGTTGTGCTCATATTGAGTCTTCCCAAGATTGGGTCTCCAAGCTTAACCAGACTGCTGCACTTGAGTCATTTGACGCTGCTTGTAAGCCAGACCTCACTGATAAATCGTACTGCGATACTTGTCTGGTGTCCGGCTTTAAGGTTCAGGAAAGTTTGATCAACCTAGATGTGGATTATCATACTCGTGTATATACCGTCATGAAAAGCTTAGAAGCATATGCATGCATATTGCGAGATCTTTTGTCCACAGATGACTTGCCAATCATGGGGTCATCACTCATCACAGTTGGTCGACCCAACAAGAAATGCCCAGTTATTAACCCCCAGTTACCAAAAAAAAAAAATTATCCACAATTTGAAGAAATGCCCAGATGCCATGAAAACTTAGAACTCATTGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

307

Amino Acids

34.22

Weight (kDa)

5.24

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	69 - 226	1.2e-36	SPARK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica	MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica	Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis	pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis	RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata	RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora	Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa	Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha	Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana	Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	13, 811
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	115, 193
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	4 cut(s)	549, 550, 688, 785
AgsI	TTSAA	4 cut(s)	198, 253, 414, 878
AluBI	AGCT	5 cut(s)	101, 281, 445, 562, 726
AluI	AGCT	5 cut(s)	101, 281, 445, 562, 726
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	2 cut(s)	34, 559
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	2 cut(s)	3, 355
ApeKI	GCWGC	2 cut(s)	575, 596
ApoI	RAATTY	2 cut(s)	115, 193
AsuHPI	GGTGA	3 cut(s)	301, 439, 499
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	2 cut(s)	562, 583
BclI	TGATCA	2 cut(s)	132, 675
BcoDI	GTCTC	2 cut(s)	34, 559
BfaI	CTAG	2 cut(s)	683, 922
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	2 cut(s)	576, 597
BlsI	GCNGC	2 cut(s)	577, 598
BmrI	ACTGGG	2 cut(s)	824, 838
BmsI	GCATC	1 cut(s)	881
BmuI	ACTGGG	2 cut(s)	824, 838
BpiI	GAAGAC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	38, 602
BsaI	GGTCTC	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	4 cut(s)	549, 550, 688, 785
Bse1I	ACTGG	5 cut(s)	13, 95, 436, 830, 844
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	4 cut(s)	549, 550, 688, 785
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	45, 241
BseNI	ACTGG	5 cut(s)	13, 95, 436, 830, 844
BseRI	GAGGAG	2 cut(s)	93, 273
BseXI	GCAGC	2 cut(s)	562, 583
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	5, 357
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	651
BslI	CCNNNNNNNGG	4 cut(s)	549, 550, 688, 785
BsmAI	GTCTC	2 cut(s)	34, 559
BsnI	GGCC	2 cut(s)	5, 357
Bso31I	GGTCTC	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	132, 223, 675, 754
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	2 cut(s)	5, 357
BspCNI	CTCAG	2 cut(s)	44, 240
BspHI	TCATGA	1 cut(s)	717
BspPI	GGATC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	559
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	5 cut(s)	13, 95, 436, 830, 844
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	4 cut(s)	132, 223, 675, 754
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	702
Bst4CI	ACNGT	2 cut(s)	715, 805
BstC8I	GCNNGC	1 cut(s)	742
BstDEI	CTNAG	5 cut(s)	31, 227, 239, 727, 904
BstDSI	CCRYGG	1 cut(s)	219
BstKTI	GATC	4 cut(s)	135, 226, 678, 757
BstMAI	GTCTC	2 cut(s)	34, 559
BstMBI	GATC	4 cut(s)	132, 223, 675, 754
BstNSI	RCATGY	2 cut(s)	216, 744
BstV1I	GCAGC	2 cut(s)	562, 583
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	2 cut(s)	223, 754
BstYI	RGATCY	2 cut(s)	223, 754
BsuRI	GGCC	2 cut(s)	5, 357
BtgI	CCRYGG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	6, 615
Cac8I	GCNNGC	1 cut(s)	742
CciI	TCATGA	1 cut(s)	717
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	8 cut(s)	213, 220, 264, 321, 718, 741, 784, 896
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	5 cut(s)	31, 227, 239, 727, 904
DpnI	GATC	4 cut(s)	134, 225, 677, 756
DpnII	GATC	4 cut(s)	132, 223, 675, 754
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	2 cut(s)	742, 746
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	8 cut(s)	216, 223, 267, 324, 721, 744, 787, 899
FatI	CATG	8 cut(s)	212, 219, 263, 320, 717, 740, 783, 895
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	2 cut(s)	132, 675
FblI	GTMKAC	2 cut(s)	13, 811
Fnu4HI	GCNGC	2 cut(s)	576, 597
Fsp4HI	GCNGC	2 cut(s)	576, 597
FspBI	CTAG	2 cut(s)	683, 922
GluI	GCNGC	2 cut(s)	576, 597
HaeIII	GGCC	2 cut(s)	5, 357
HapII	CCGG	1 cut(s)	651
HgaI	GACGC	1 cut(s)	602
Hin1II	CATG	8 cut(s)	216, 223, 267, 324, 721, 744, 787, 899
HincII	GTYRAC	1 cut(s)	812
HindII	GTYRAC	1 cut(s)	812
HindIII	AAGCTT	2 cut(s)	560, 724
HinfI	GANTC	3 cut(s)	243, 536, 584
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	3 cut(s)	301, 439, 499
Hpy166II	GTNNAC	3 cut(s)	14, 765, 812
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	665, 718
Hpy8I	GTNNAC	3 cut(s)	14, 765, 812
HpyAV	CCTTC	3 cut(s)	77, 259, 474
HpyCH4III	ACNGT	2 cut(s)	715, 805
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	7 cut(s)	25, 44, 267, 350, 578, 740, 744
HpyF3I	CTNAG	5 cut(s)	31, 227, 239, 727, 904
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	8 cut(s)	216, 223, 267, 324, 721, 744, 787, 899
Ksp22I	TGATCA	2 cut(s)	132, 675
Kzo9I	GATC	4 cut(s)	132, 223, 675, 754
LmnI	GCTCC	2 cut(s)	106, 286
Lsp1109I	GCAGC	2 cut(s)	562, 583
LweI	GCATC	1 cut(s)	881
MaeI	CTAG	2 cut(s)	683, 922
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	505, 846
MalI	GATC	4 cut(s)	134, 225, 677, 756
MboI	GATC	4 cut(s)	132, 223, 675, 754
MboII	GAAGA	3 cut(s)	249, 531, 890
MflI	RGATCY	2 cut(s)	223, 754
MhlI	GDGCHC	1 cut(s)	529
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	115, 165, 193, 414, 862, 872
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	545, 593
MnlI	CCTC	8 cut(s)	13, 114, 294, 344, 460, 470, 478, 623
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	742, 746
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	564, 657, 837
MslI	CAYNNNNRTG	2 cut(s)	702, 739
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	651
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	4 cut(s)	132, 223, 675, 754
NlaIII	CATG	8 cut(s)	216, 223, 267, 324, 721, 744, 787, 899
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	2 cut(s)	742, 746
NspI	RCATGY	2 cut(s)	216, 744
PaeI	GCATGC	1 cut(s)	744
PagI	TCATGA	1 cut(s)	717
PceI	AGGCCT	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	577, 598
PleI	GAGTC	2 cut(s)	544, 592
PpsI	GAGTC	2 cut(s)	544, 592
PsuI	RGATCY	2 cut(s)	223, 754
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	2 cut(s)	702, 739
SalI	GTCGAC	1 cut(s)	810
SaqAI	TTAA	3 cut(s)	564, 657, 837
SatI	GCNGC	2 cut(s)	576, 597
Sau3AI	GATC	4 cut(s)	132, 223, 675, 754
SchI	GAGTC	2 cut(s)	545, 593
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	1 cut(s)	881
SmiMI	CAYNNNNRTG	2 cut(s)	702, 739
SmlI	CTYRAG	2 cut(s)	17, 581
SmoI	CTYRAG	2 cut(s)	17, 581
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	6 cut(s)	115, 165, 193, 414, 862, 872
SseBI	AGGCCT	1 cut(s)	357
SspMI	CTAG	2 cut(s)	683, 922
StuI	AGGCCT	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	715, 805
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	811
TasI	AATT	6 cut(s)	115, 165, 193, 414, 862, 872
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	3 cut(s)	564, 657, 837
Tru9I	TTAA	3 cut(s)	564, 657, 837
TscAI	CASTG	2 cut(s)	13, 622
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	575, 596
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	4 cut(s)	140, 249, 734, 912
TspRI	CASTG	2 cut(s)	13, 622
XapI	RAATTY	2 cut(s)	115, 193
XceI	RCATGY	2 cut(s)	216, 744
XmiI	GTMKAC	2 cut(s)	13, 811
XspI	CTAG	2 cut(s)	683, 922
Zsp2I	ATGCAT	2 cut(s)	742, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.