Rw1G006160

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000114
Physical Location & Seq
Reverse (-)
12536366 .. 12538534
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006160.1

Sequence Viewer

Length: 972 bp
ATGAGCGAGTGTGACTCTGAATGCCAGCAGAACTGTTCTTGTACAGCTTATGCTTATGTAAATGCGACAGATGGAAGTAATATTGGGACTTGTTTGGCATGGTTTGGCGACTTACTGGACCTAGTAGAGAATATAACTATTGGTGCAAAAGATATTTATATTCGTGTTCATGGCTCCGAACTAGGCAAAAAGGGTCTTTCCGTTAATTCCTTGAAGTGGAACCTTGTAATTGCAATAGTCTCTGCAGCTACAGTTGGATTGCTTACAATAACTTTTGGTAAGCAGAATATAAGTAATGTTAGTGCAGGAGGTGGGAAGAATGATACAGAATTACCACTCTTCAGTTTAAGGAGTATGCTAGCTGCTACAAACAACTTCTCTGAAGCGAACAAGCTTGGAGAGGGGGGGTTCGGCCCTGTTTATAAGGGAATTTTGCCAGAAAATCAAGAAGTGGCCATAAAGAGGCTATCAAAGAAGTCTGGGCAAGGGCATCATGAGTTCAAGAATGAGTTGAAACTTATAGCCAAACTCCAGCATACCAATATGGAAGGAGATGAAATGATATTGATCTATGAATACATGTCTAATCGAAGTTTGGACAAATTTTTGTTTGATGCCTTTGAAAAGACAAAGTTAGATTGGGATACACGCTTTCGAATTATACAAGGTATTGCTCAAGGAGTATGGCAATTATGGAAAGAAGGTAGAGGAGTGGAGGTAATTGACGCATCAGTAAGGGAAACATGCCGGATTCATGAAGCTTTGAGGTGTATCCATGTCGGGCTTTTGTGCGTTCAAGAAGCTCCAGTTGATCGACCGACAATGTCATCCGTGATTCATATGCTCGAGGTTGATGAAGCTACATCACTTCCACCCTCCAAAGAACCATCTTTTTCAACATGTAGAAATTCAAGTCCTGTTACCATTTTTTCTGACAATGTAATCACCATTACTTTGCCAGAACCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

323

Amino Acids

35.62

Weight (kDa)

5.59

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 2 - 41 1.5e-09 PAN-like domain
Pkinase PF00069 127 - 234 1.4e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 129 - 229 6.3e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 3 cut(s) 429, 602, 907
AcuI CTGAAG 2 cut(s) 325, 402
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 216, 462
AflIII ACRYGT 2 cut(s) 579, 899
AgsI TTSAA 7 cut(s) 214, 502, 514, 623, 797, 897, 912
AluBI AGCT 7 cut(s) 47, 248, 362, 394, 761, 803, 860
AluI AGCT 7 cut(s) 47, 248, 362, 394, 761, 803, 860
Alw26I GTCTC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 845
AoxI GGCC 2 cut(s) 412, 453
ApeKI GCWGC 2 cut(s) 245, 362
ApoI RAATTY 3 cut(s) 429, 602, 907
AspS9I GGNCC 2 cut(s) 118, 413
AsuHPI GGTGA 1 cut(s) 937
AsuII TTCGAA 1 cut(s) 655
AsuNHI GCTAGC 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 845
AvaII GGWCC 1 cut(s) 118
BalI TGGCCA 1 cut(s) 455
BbvI GCAGC 2 cut(s) 257, 349
BccI CCATC 2 cut(s) 65, 895
BciVI GTATCC 2 cut(s) 637, 782
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 3 cut(s) 122, 182, 359
BfmI CTRYAG 2 cut(s) 243, 249
BfuI GTATCC 2 cut(s) 637, 782
BisI GCNGC 2 cut(s) 246, 363
BlsI GCNGC 2 cut(s) 247, 364
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 845
BmgT120I GGNCC 2 cut(s) 118, 413
BmiI GGNNCC 2 cut(s) 175, 221
BmsI GCATC 3 cut(s) 499, 604, 737
BmtI GCTAGC 1 cut(s) 362
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 515, 789
Bpu14I TTCGAA 1 cut(s) 655
BpuEI CTTGAG 1 cut(s) 660
BsaBI GATNNNNATC 1 cut(s) 566
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 462
Bse1I ACTGG 2 cut(s) 120, 806
Bse8I GATNNNNATC 1 cut(s) 566
BseGI GGATG 1 cut(s) 827
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 2 cut(s) 216, 462
BseNI ACTGG 2 cut(s) 120, 806
BseRI GAGGAG 1 cut(s) 723
BseXI GCAGC 2 cut(s) 257, 349
BsgI GTGCAG 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 818
BshFI GGCC 2 cut(s) 414, 455
BsiEI CGRYCG 1 cut(s) 818
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 1 cut(s) 748
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 216, 462
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 414, 455
BsoBI CYCGRG 1 cut(s) 845
Bsp119I TTCGAA 1 cut(s) 655
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 567, 811
BspANI GGCC 2 cut(s) 414, 455
BspHI TCATGA 2 cut(s) 493, 754
BspLI GGNNCC 2 cut(s) 175, 221
BspMAI CTGCAG 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 362
BspT104I TTCGAA 1 cut(s) 655
BsrGI TGTACA 1 cut(s) 41
BsrI ACTGG 2 cut(s) 120, 806
BssMI GATC 2 cut(s) 567, 811
Bst4CI ACNGT 2 cut(s) 35, 253
Bst6I CTCTTC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 655
BstC8I GCNNGC 2 cut(s) 26, 360
BstF5I GGATG 1 cut(s) 827
BstKTI GATC 2 cut(s) 570, 814
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 567, 811
BstMCI CGRYCG 1 cut(s) 818
BstNSI RCATGY 3 cut(s) 583, 747, 903
BstSFI CTRYAG 2 cut(s) 243, 249
BstV1I GCAGC 2 cut(s) 257, 349
BsuI GTATCC 2 cut(s) 637, 782
BsuRI GGCC 2 cut(s) 414, 455
BtsCI GGATG 1 cut(s) 827
Cac8I GCNNGC 2 cut(s) 26, 360
CciI TCATGA 2 cut(s) 493, 754
Cfr13I GGNCC 2 cut(s) 118, 413
CseI GACGC 1 cut(s) 734
Csp6I GTAC 1 cut(s) 42
CviAII CATG 8 cut(s) 99, 170, 494, 580, 744, 755, 776, 900
CviQI GTAC 1 cut(s) 42
DpnI GATC 2 cut(s) 569, 813
DpnII GATC 2 cut(s) 567, 811
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 325, 402
Eco88I CYCGRG 1 cut(s) 845
FaeI CATG 8 cut(s) 102, 173, 497, 583, 747, 758, 779, 903
FaqI GGGAC 1 cut(s) 100
FatI CATG 8 cut(s) 98, 169, 493, 579, 743, 754, 775, 899
FauNDI CATATG 1 cut(s) 840
Fnu4HI GCNGC 2 cut(s) 246, 363
FokI GGATG 1 cut(s) 814
Fsp4HI GCNGC 2 cut(s) 246, 363
FspBI CTAG 3 cut(s) 122, 182, 359
GluI GCNGC 2 cut(s) 246, 363
GsuI CTGGAG 2 cut(s) 515, 789
HaeIII GGCC 2 cut(s) 414, 455
HapII CCGG 1 cut(s) 748
HgaI GACGC 1 cut(s) 734
Hin1II CATG 8 cut(s) 102, 173, 497, 583, 747, 758, 779, 903
HindIII AAGCTT 2 cut(s) 392, 759
HinfI GANTC 3 cut(s) 14, 751, 835
HpaII CCGG 1 cut(s) 748
HphI GGTGA 1 cut(s) 937
Hpy188I TCNGA 4 cut(s) 19, 178, 382, 934
Hpy188III TCNNGA 5 cut(s) 446, 494, 502, 755, 797
HpyAV CCTTC 2 cut(s) 542, 695
HpyCH4III ACNGT 2 cut(s) 35, 253
HpyCH4V TGCA 4 cut(s) 146, 233, 245, 305
Hsp92II CATG 8 cut(s) 102, 173, 497, 583, 747, 758, 779, 903
Kzo9I GATC 2 cut(s) 567, 811
LmnI GCTCC 2 cut(s) 179, 808
Lsp1109I GCAGC 2 cut(s) 257, 349
LweI GCATC 3 cut(s) 499, 604, 737
MaeI CTAG 3 cut(s) 122, 182, 359
MaeIII GTNAC 2 cut(s) 11, 919
MalI GATC 2 cut(s) 569, 813
MboI GATC 2 cut(s) 567, 811
MboII GAAGA 2 cut(s) 328, 331
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 9 cut(s) 205, 228, 329, 429, 602, 657, 689, 720, 907
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 8 cut(s) 302, 394, 456, 701, 709, 759, 841, 886
Mox20I TGGCCA 1 cut(s) 455
MscI TGGCCA 1 cut(s) 455
MseI TTAA 2 cut(s) 204, 347
Msp20I TGGCCA 1 cut(s) 455
MspI CCGG 1 cut(s) 748
Mva1269I GAATGC 1 cut(s) 26
NdeI CATATG 1 cut(s) 840
NdeII GATC 2 cut(s) 567, 811
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 8 cut(s) 102, 173, 497, 583, 747, 758, 779, 903
NlaIV GGNNCC 2 cut(s) 175, 221
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 3 cut(s) 583, 747, 903
NspV TTCGAA 1 cut(s) 655
PaeR7I CTCGAG 1 cut(s) 845
PagI TCATGA 2 cut(s) 493, 754
PciI ACATGT 2 cut(s) 579, 899
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 751, 835
PflFI GACNNNGTC 1 cut(s) 823
PkrI GCNGC 2 cut(s) 247, 364
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PscI ACATGT 2 cut(s) 579, 899
PsiI TTATAA 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 175, 221
PspPI GGNCC 2 cut(s) 118, 413
PspXI VCTCGAGB 1 cut(s) 845
PstI CTGCAG 1 cut(s) 247
PsyI GACNNNGTC 1 cut(s) 823
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 204, 347
SatI GCNGC 2 cut(s) 246, 363
Sau3AI GATC 2 cut(s) 567, 811
Sau96I GGNCC 2 cut(s) 118, 413
SchI GAGTC 1 cut(s) 8
SfaNI GCATC 3 cut(s) 499, 604, 737
SfcI CTRYAG 2 cut(s) 243, 249
Sfr274I CTCGAG 1 cut(s) 845
SfuI TTCGAA 1 cut(s) 655
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 845
SmlI CTYRAG 2 cut(s) 675, 845
SmoI CTYRAG 2 cut(s) 675, 845
Sse9I AATT 9 cut(s) 205, 228, 329, 429, 602, 657, 689, 720, 907
SspI AATATT 1 cut(s) 82
SspMI CTAG 3 cut(s) 122, 182, 359
TaaI ACNGT 2 cut(s) 35, 253
TaqI TCGA 5 cut(s) 589, 655, 814, 846, 967
TaqII GACCGA 1 cut(s) 832
TasI AATT 9 cut(s) 205, 228, 329, 429, 602, 657, 689, 720, 907
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 2 cut(s) 751, 835
Tru1I TTAA 2 cut(s) 204, 347
Tru9I TTAA 2 cut(s) 204, 347
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 2 cut(s) 245, 362
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 7 cut(s) 158, 570, 588, 743, 771, 827, 870
TspGWI ACGGA 2 cut(s) 190, 820
Tth111I GACNNNGTC 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 3 cut(s) 429, 602, 907
XceI RCATGY 3 cut(s) 583, 747, 903
XhoI CTCGAG 1 cut(s) 845
XspI CTAG 3 cut(s) 122, 182, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.