pycom06g12720

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
17808387 .. 17809331
945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12720.1

Sequence Viewer

Length: 762 bp
ATGCATGCCCTTCTGCTTCAGTTTTTGCGTTCTTTCCTTTTGCTCACTTCCTTTATTTCAATCAACTTTGAGTTATATTTATGTGCAGATAATGAAGCGTACTCAAACTGCAGCGAAGCCATCAACTGCGGGGGCATCTGGTCAAACGTCGTGTACCCGTTTTGGGGTGTAAACAGACCCTATTACTGTGGCCAACCTGGGTTTGAGGTCCAATGCCTAGACAGCGTTCCCGTGTTCAGCATGTGGAATATCGACTACAGAATTCTCGAAATGAATTCGAGTAGTTGTCCTCGGACTATTAAAGTTGCTCGGCAGGACTATTGGAAAACTATCTGTCCTCCCACTTTTGTTTACACCAACATCAACGTCTCTCTGTTTGCTTATGCTTCCGGGCTTGAAGACGTGACCTTTTACTACGTATGCAGTACAAATACGGGTACTACTATCCCGGGATTTAATTTTAATTCCCAATCCTGCAGTAATAACGGCGCGATCGATGGGGGTTTTGAATTGGAAATTAAGATTGATGATGATGAATGCAACAGTTGTGAGGTATCAGGAGGAACGTGCGGGCTTAACATTACTAGTGGTGGATTCAGTTGCTTTTGCCATGATCGGGATAATGCAAATGCAACCACATGCAAATCAACTTCAACTCGGTCATCAGGTACGTTATGCTTATCTCACTGCAATCGATTAACTACGCGGAACCAATCATGCATTAGATTTTCATGCGTTGATAAAATTAGATGGAGTTATTAA

Protein Analysis

254

Amino Acids

28.26

Weight (kDa)

5.02

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 37 - 103 2.8e-11 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 157 - 206 2.1e-10 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 491, 706
AciI CCGC 3 cut(s) 129, 570, 706
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 261, 274
AfaI GTAC 5 cut(s) 101, 155, 427, 439, 670
AfiI CCNNNNNNNGG 3 cut(s) 163, 164, 616
AgsI TTSAA 4 cut(s) 60, 398, 509, 654
AhlI ACTAGT 1 cut(s) 584
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 373
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 2 cut(s) 261, 274
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 3 cut(s) 391, 449, 450
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 123
BccI CCATC 3 cut(s) 128, 491, 744
BceAI ACGGC 1 cut(s) 502
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 3 cut(s) 391, 449, 450
BcoDI GTCTC 1 cut(s) 373
BcuI ACTAGT 1 cut(s) 584
BfaI CTAG 2 cut(s) 218, 585
BfmI CTRYAG 3 cut(s) 109, 256, 475
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 4 cut(s) 198, 391, 449, 450
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 710
BmrFI CCNGG 4 cut(s) 198, 391, 449, 450
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 405
BpuMI CCSGG 3 cut(s) 391, 449, 450
Bsa29I ATCGAT 2 cut(s) 495, 694
BsaAI YACGTR 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 197, 290, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 164, 616
BseBI CCWGG 1 cut(s) 198
BseCI ATCGAT 2 cut(s) 495, 694
BseDI CCNNGG 3 cut(s) 197, 290, 448
BseLI CCNNNNNNNGG 3 cut(s) 163, 164, 616
BseXI GCAGC 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 491, 706
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 1 cut(s) 192
BshVI ATCGAT 2 cut(s) 495, 694
BsiEI CGRYCG 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 2 cut(s) 390, 449
BslI CCNNNNNNNGG 3 cut(s) 163, 164, 616
BsmAI GTCTC 1 cut(s) 373
BsmBI CGTCTC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 448
Bsp143I GATC 2 cut(s) 492, 613
BspACI CCGC 3 cut(s) 129, 570, 706
BspANI GGCC 1 cut(s) 192
BspDI ATCGAT 2 cut(s) 495, 694
BspFNI CGCG 2 cut(s) 491, 706
BspLI GGNNCC 1 cut(s) 710
BspMAI CTGCAG 2 cut(s) 113, 479
BssECI CCNNGG 3 cut(s) 197, 290, 448
BssMI GATC 2 cut(s) 492, 613
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 188, 545
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 6, 572
BstFNI CGCG 2 cut(s) 491, 706
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 2 cut(s) 495, 616
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 2 cut(s) 492, 613
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 3 cut(s) 8, 244, 642
BstSCI CCNGG 4 cut(s) 196, 389, 447, 448
BstSFI CTRYAG 3 cut(s) 109, 256, 475
BstSNI TACGTA 1 cut(s) 418
BstUI CGCG 2 cut(s) 491, 706
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 405
Bsu15I ATCGAT 2 cut(s) 495, 694
BsuRI GGCC 1 cut(s) 192
BsuTUI ATCGAT 2 cut(s) 495, 694
BtrI CACGTC 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 1 cut(s) 685
Cac8I GCNNGC 2 cut(s) 6, 572
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 448
ClaI ATCGAT 2 cut(s) 495, 694
Csp6I GTAC 5 cut(s) 100, 154, 426, 438, 669
CviAII CATG 6 cut(s) 5, 241, 611, 639, 717, 732
CviJI RGCY 4 cut(s) 119, 192, 394, 574
CviKI_1 RGCY 4 cut(s) 119, 192, 394, 574
CviQI GTAC 5 cut(s) 100, 154, 426, 438, 669
DpnI GATC 2 cut(s) 494, 615
DpnII GATC 2 cut(s) 492, 613
EaeI YGGCCR 1 cut(s) 190
Eco105I TACGTA 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 448
EcoRI GAATTC 2 cut(s) 261, 274
EcoRII CCWGG 1 cut(s) 196
EcoT22I ATGCAT 2 cut(s) 6, 722
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 6 cut(s) 8, 244, 614, 642, 720, 735
FatI CATG 6 cut(s) 4, 240, 610, 638, 716, 731
FauI CCCGC 2 cut(s) 122, 563
Fnu4HI GCNGC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 2 cut(s) 218, 585
GlaI GCGC 1 cut(s) 490
GluI GCNGC 1 cut(s) 112
HaeIII GGCC 1 cut(s) 192
HapII CCGG 2 cut(s) 390, 449
HhaI GCGC 1 cut(s) 491
Hin1II CATG 6 cut(s) 8, 244, 614, 642, 720, 735
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 1 cut(s) 594
HpaII CCGG 2 cut(s) 390, 449
Hpy166II GTNNAC 3 cut(s) 154, 172, 352
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 3 cut(s) 266, 558, 617
Hpy8I GTNNAC 3 cut(s) 154, 172, 352
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 188, 545
HpyCH4IV ACGT 6 cut(s) 147, 366, 402, 417, 566, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpySE526I ACGT 6 cut(s) 147, 366, 402, 417, 566, 671
Hsp92II CATG 6 cut(s) 8, 244, 614, 642, 720, 735
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 2 cut(s) 492, 613
LpnPI CCDG 9 cut(s) 124, 183, 210, 299, 403, 462, 487, 543, 651
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 144
MaeI CTAG 2 cut(s) 218, 585
MaeII ACGT 6 cut(s) 147, 366, 402, 417, 566, 671
MaeIII GTNAC 1 cut(s) 403
MalI GATC 2 cut(s) 494, 615
MboI GATC 2 cut(s) 492, 613
MboII GAAGA 1 cut(s) 410
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 7 cut(s) 261, 274, 457, 463, 509, 516, 744
MluNI TGGCCA 1 cut(s) 192
MnlI CCTC 5 cut(s) 199, 300, 348, 544, 554
Mox20I TGGCCA 1 cut(s) 192
Mph1103I ATGCAT 2 cut(s) 6, 722
MscI TGGCCA 1 cut(s) 192
MseI TTAA 7 cut(s) 300, 456, 462, 519, 576, 698, 760
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 2 cut(s) 390, 449
MspR9I CCNGG 4 cut(s) 198, 391, 449, 450
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 2 cut(s) 491, 706
MwoI GCNNNNNNNGC 1 cut(s) 222
NciI CCSGG 3 cut(s) 391, 449, 450
NdeII GATC 2 cut(s) 492, 613
NlaIII CATG 6 cut(s) 8, 244, 614, 642, 720, 735
NlaIV GGNNCC 1 cut(s) 710
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 403
NsiI ATGCAT 2 cut(s) 6, 722
NspI RCATGY 3 cut(s) 8, 244, 642
PaeI GCATGC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 1 cut(s) 594
PkrI GCNGC 1 cut(s) 113
Ple19I CGATCG 1 cut(s) 495
Ppu21I YACGTR 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 710
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 2 cut(s) 113, 479
PvuI CGATCG 1 cut(s) 495
RsaI GTAC 5 cut(s) 101, 155, 427, 439, 670
RsaNI GTAC 5 cut(s) 100, 154, 426, 438, 669
SaqAI TTAA 7 cut(s) 300, 456, 462, 519, 576, 698, 760
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 2 cut(s) 492, 613
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 4 cut(s) 198, 391, 449, 450
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 3 cut(s) 109, 256, 475
SinI GGWCC 1 cut(s) 208
SmaI CCCGGG 1 cut(s) 450
SnaBI TACGTA 1 cut(s) 418
SpeI ACTAGT 1 cut(s) 584
SphI GCATGC 1 cut(s) 8
Sse9I AATT 7 cut(s) 261, 274, 457, 463, 509, 516, 744
SsiI CCGC 3 cut(s) 129, 570, 706
SspMI CTAG 2 cut(s) 218, 585
StyD4I CCNGG 4 cut(s) 196, 389, 447, 448
TaaI ACNGT 2 cut(s) 188, 545
TaiI ACGT 6 cut(s) 150, 369, 405, 420, 569, 674
TaqI TCGA 5 cut(s) 252, 267, 278, 495, 694
TaqII GACCGA 1 cut(s) 648
TasI AATT 7 cut(s) 261, 274, 457, 463, 509, 516, 744
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 1 cut(s) 594
Tru1I TTAA 7 cut(s) 300, 456, 462, 519, 576, 698, 760
Tru9I TTAA 7 cut(s) 300, 456, 462, 519, 576, 698, 760
TscAI CASTG 1 cut(s) 692
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 4 cut(s) 108, 287, 549, 720
TspMI CCCGGG 1 cut(s) 448
TspRI CASTG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 2 cut(s) 261, 274
XceI RCATGY 3 cut(s) 8, 244, 642
XmaI CCCGGG 1 cut(s) 448
XspI CTAG 2 cut(s) 218, 585
Zsp2I ATGCAT 2 cut(s) 6, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.