Rh1DG082300

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000114
Physical Location & Seq
Reverse (-)
15057784 .. 15071126
13343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG082300.1

Sequence Viewer

Length: 1458 bp
ATGAACCTTTTTTTCCTTCCTCTTCTTCCTCTGTCTCACTGTTTCCGAATGGGGTGGCTCTTGTGTTACCTTGTAACAGTGCTCTTATCTAATATCCTGCCTTTCTGTACCTGCCAAGACAAAATTGTACCAGGACAGCATATCAGTGGTAACCTGACTTTGGTTTCTTCCCTTGGGACCTTTTCATTAGGCTTCTTCAATCCTGAAAATTCTACTAAATACTTCCTTGGTATACGATTCAACAAATTCCCAACTACTGCGTTAGTATGGGTAGCTAATAGAGAATCTCCACTTGATTCTCCGGGTGTCTTTATGCTCAGCAGTGATGGAAATCTTGTGGTGTTGGATCAGACTAGAAAACTTGTCTGGTCAACTAAAGCATCCGTATCTGCTTCTGCAATGAATCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACTTTGTGGCAGAGCTTCGATCATCCCTCTGATACTGCGTTGCCTGGCATGAAGATTAGCTTGAACAAAACGACTGGCCAACAAAGGCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAGTTCACCTTCGGCATAGATCCTAAAGTACCATTTCAGGCCTTTATCTGGAAGGAAACTACTCCGTATTTTAGAAGTTCTGTGTACGTTGACCAGTATACAAGAACACAGTTTCAAAATCCAGGTGGAACTGCGTTATTCTATTCATACAACTATGATGTTGATGAGGTTTATCTTGCTTGCAGTGTCTCGGATAGCTCAGTAAAATGGAGGGCCTGGTTGGATCCCACGGGCCAACTTAAACAGCAGTTGTGGCCGAATTCTAGTAAAACGTGGTTGGACGTAGGGAATCCAGGTGATATCTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGTGAACCCCTGTCATCACCATGCAAGTGTTTGACTGGTTTTACAGCCAAGTTTCCGAACCAATCGGCGGTAGGGGATTGGTCCAGTGGCTGCATTAGGGAAAAGGTGTTGACATGTGGTAACGGCATACAAGGTTACTTTTCAAAGCTTGAAAAGGTGAAACTGCCTGATCATTTAGTTCTCTTAGAGAATAGGAGTATGAGCGAGTGTGACTCTGAATGCCAGCAGAACTGTTCTTGTACAGCTTATGCTTATGTAAATGCGACAGATGGAAGTAATAGTGGGACTTGTTTGGCATGGTTTGGCGAATTAGTGGATCTAGTAGAGAATAAAACTACTGGTGCAAATGATATTTATATTCGTGTTCATGGCTCCGAACTAGGCAAAAAGGGTCTTTCCGTTAATTCCTTGAAGCGGAACCTTGAAGCCGAACACAAGAATGATCTTCTCCTGCAGATGAAATTTCTAATTACATTGCTTTCTGGTTCTAGTACAGCTCCCATCAGATCCCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

485

Amino Acids

53.76

Weight (kDa)

6.51

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 88 - 188 4.5e-32 D-mannose binding lectin
S_locus_glycop PF00954 246 - 330 3.8e-14 S-locus glycoprotein domain
PAN_2 PF08276 359 - 420 1.4e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 549
AccI GTMKAC 2 cut(s) 232, 689
AciI CCGC 3 cut(s) 915, 1007, 1354
AclWI GGATC 7 cut(s) 354, 572, 605, 809, 822, 1263, 1440
AcoI YGGCCR 2 cut(s) 538, 845
AcsI RAATTY 4 cut(s) 208, 245, 850, 1400
AcyI GRCGYC 1 cut(s) 550
AdeI CACNNNGTG 1 cut(s) 468
AfaI GTAC 6 cut(s) 109, 129, 621, 677, 1180, 1432
AfeI AGCGCT 1 cut(s) 570
AfiI CCNNNNNNNGG 5 cut(s) 160, 587, 639, 1006, 1353
AflIII ACRYGT 1 cut(s) 1052
AgsI TTSAA 9 cut(s) 199, 241, 455, 526, 707, 1083, 1091, 1351, 1364
AjnI CCWGG 6 cut(s) 130, 505, 560, 712, 806, 883
AloI GAACNNNNNNTCC 2 cut(s) 426, 458
AluBI AGCT 8 cut(s) 275, 450, 477, 522, 789, 1087, 1184, 1436
AluI AGCT 8 cut(s) 275, 450, 477, 522, 789, 1087, 1184, 1436
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 2 cut(s) 39, 784
AlwI GGATC 7 cut(s) 354, 572, 605, 809, 822, 1263, 1440
AlwNI CAGNNNCTG 1 cut(s) 1029
Aor51HI AGCGCT 1 cut(s) 570
AoxI GGCC 5 cut(s) 538, 630, 804, 823, 845
ApeKI GCWGC 2 cut(s) 566, 1029
ApoI RAATTY 4 cut(s) 208, 245, 850, 1400
AspLEI GCGC 2 cut(s) 552, 571
AspS9I GGNCC 5 cut(s) 177, 804, 823, 917, 1020
AsuC2I CCSGG 2 cut(s) 303, 588
AsuHPI GGTGA 5 cut(s) 589, 899, 948, 953, 1108
AvaII GGWCC 3 cut(s) 177, 917, 1020
BalI TGGCCA 1 cut(s) 540
BamHI GGATCC 1 cut(s) 814
BanI GGYRCC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 578, 1016
BccI CCATC 3 cut(s) 320, 1202, 1448
BceAI ACGGC 1 cut(s) 1078
BciT130I CCWGG 6 cut(s) 132, 507, 562, 714, 808, 885
BciVI GTATCC 1 cut(s) 421
BclI TGATCA 1 cut(s) 1108
BcnI CCSGG 2 cut(s) 303, 588
BcoDI GTCTC 2 cut(s) 39, 784
BfaI CTAG 6 cut(s) 354, 422, 855, 1259, 1319, 1428
BfmI CTRYAG 1 cut(s) 1391
BfoI RGCGCY 2 cut(s) 553, 572
BfuAI ACCTGC 1 cut(s) 119
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 2 cut(s) 567, 1030
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 2 cut(s) 568, 1031
Bme1390I CCNGG 8 cut(s) 132, 303, 507, 562, 588, 714, 808, 885
Bme18I GGWCC 3 cut(s) 177, 917, 1020
BmgT120I GGNCC 5 cut(s) 177, 804, 823, 917, 1020
BmiI GGNNCC 6 cut(s) 178, 551, 816, 919, 1312, 1358
BmrFI CCNGG 8 cut(s) 132, 303, 507, 562, 588, 714, 808, 885
BmsI GCATC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 1136, 1168
Bpu1102I GCTNAGC 1 cut(s) 317
BpuMI CCSGG 2 cut(s) 303, 588
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 550
BsaJI CCNNGG 4 cut(s) 172, 226, 561, 819
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 587, 639, 1006, 1353
Bse1I ACTGG 6 cut(s) 418, 541, 685, 979, 1023, 1282
Bse3DI GCAATG 3 cut(s) 405, 910, 1412
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 6 cut(s) 132, 507, 562, 714, 808, 885
BseDI CCNNGG 4 cut(s) 172, 226, 561, 819
BseGI GGATG 3 cut(s) 380, 484, 557
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 5 cut(s) 160, 587, 639, 1006, 1353
BseMI GCAATG 3 cut(s) 405, 910, 1412
BseMII CTCAG 3 cut(s) 331, 437, 804
BseNI ACTGG 6 cut(s) 418, 541, 685, 979, 1023, 1282
BseXI GCAGC 2 cut(s) 578, 1016
BshFI GGCC 5 cut(s) 540, 632, 806, 825, 847
BshNI GGYRCC 1 cut(s) 549
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 3 cut(s) 302, 432, 588
BslFI GGGAC 3 cut(s) 190, 903, 1237
BslI CCNNNNNNNGG 5 cut(s) 160, 587, 639, 1006, 1353
BsmAI GTCTC 2 cut(s) 39, 784
BsmFI GGGAC 3 cut(s) 190, 903, 1237
BsmI GAATGC 1 cut(s) 1163
BsnI GGCC 5 cut(s) 540, 632, 806, 825, 847
Bsp1286I GDGCHC 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 1178
Bsp143I GATC 9 cut(s) 346, 481, 577, 610, 814, 1108, 1255, 1381, 1445
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 3 cut(s) 915, 1007, 1354
BspANI GGCC 5 cut(s) 540, 632, 806, 825, 847
BspCNI CTCAG 3 cut(s) 330, 438, 803
BspLI GGNNCC 6 cut(s) 178, 551, 816, 919, 1312, 1358
BspMAI CTGCAG 1 cut(s) 1395
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 7 cut(s) 354, 572, 605, 809, 822, 1263, 1440
BspT107I GGYRCC 1 cut(s) 549
BsrDI GCAATG 3 cut(s) 405, 910, 1412
BsrGI TGTACA 1 cut(s) 1178
BsrI ACTGG 6 cut(s) 418, 541, 685, 979, 1023, 1282
BssECI CCNNGG 4 cut(s) 172, 226, 561, 819
BssMI GATC 9 cut(s) 346, 481, 577, 610, 814, 1108, 1255, 1381, 1445
BssNAI GTATAC 2 cut(s) 233, 690
BssNI GRCGYC 1 cut(s) 550
BssT1I CCWWGG 2 cut(s) 172, 226
Bst1107I GTATAC 2 cut(s) 233, 690
Bst2UI CCWGG 6 cut(s) 132, 507, 562, 714, 808, 885
Bst4CI ACNGT 4 cut(s) 41, 79, 702, 1172
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 550
BstAUI TGTACA 1 cut(s) 1178
BstC8I GCNNGC 2 cut(s) 772, 1163
BstDEI CTNAG 4 cut(s) 317, 446, 790, 1123
BstDSI CCRYGG 1 cut(s) 819
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 3 cut(s) 380, 484, 557
BstH2I RGCGCY 2 cut(s) 553, 572
BstHHI GCGC 2 cut(s) 552, 571
BstKTI GATC 9 cut(s) 349, 484, 580, 613, 817, 1111, 1258, 1384, 1448
BstMAI GTCTC 2 cut(s) 39, 784
BstMBI GATC 9 cut(s) 346, 481, 577, 610, 814, 1108, 1255, 1381, 1445
BstMWI GCNNNNNNNGC 1 cut(s) 844
BstNI CCWGG 6 cut(s) 132, 507, 562, 714, 808, 885
BstNSI RCATGY 1 cut(s) 1056
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 8 cut(s) 130, 301, 505, 560, 586, 712, 806, 883
BstSFI CTRYAG 1 cut(s) 1391
BstV1I GCAGC 2 cut(s) 578, 1016
BstX2I RGATCY 4 cut(s) 610, 814, 1255, 1445
BstYI RGATCY 4 cut(s) 610, 814, 1255, 1445
BstZ17I GTATAC 2 cut(s) 233, 690
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 5 cut(s) 540, 632, 806, 825, 847
BtgI CCRYGG 1 cut(s) 819
BtsCI GGATG 3 cut(s) 380, 484, 557
BtsI GCAGTG 2 cut(s) 328, 781
BtsIMutI CAGTG 6 cut(s) 37, 84, 151, 328, 781, 1030
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 772, 1163
CaiI CAGNNNCTG 1 cut(s) 1029
CfoI GCGC 2 cut(s) 552, 571
Cfr13I GGNCC 5 cut(s) 177, 804, 823, 917, 1020
Csp6I GTAC 6 cut(s) 108, 128, 620, 676, 1179, 1431
CviAII CATG 5 cut(s) 511, 960, 1053, 1236, 1307
CviQI GTAC 6 cut(s) 108, 128, 620, 676, 1179, 1431
DdeI CTNAG 4 cut(s) 317, 446, 790, 1123
DinI GGCGCC 1 cut(s) 551
DpnI GATC 9 cut(s) 348, 483, 579, 612, 816, 1110, 1257, 1383, 1447
DpnII GATC 9 cut(s) 346, 481, 577, 610, 814, 1108, 1255, 1381, 1445
DraIII CACNNNGTG 1 cut(s) 468
EaeI YGGCCR 2 cut(s) 538, 845
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 172, 226
Eco147I AGGCCT 1 cut(s) 632
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 3 cut(s) 177, 917, 1020
Eco47III AGCGCT 1 cut(s) 570
Eco91I GGTNACC 1 cut(s) 149
EcoO109I RGGNCCY 2 cut(s) 177, 804
EcoO65I GGTNACC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 6 cut(s) 130, 505, 560, 712, 806, 883
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 2 cut(s) 172, 226
EgeI GGCGCC 1 cut(s) 551
EheI GGCGCC 1 cut(s) 551
ErhI CCWWGG 2 cut(s) 172, 226
FaeI CATG 5 cut(s) 514, 963, 1056, 1239, 1310
FalI AAGNNNNNCTT 4 cut(s) 506, 538, 584, 616
FaqI GGGAC 3 cut(s) 190, 903, 1237
FatI CATG 5 cut(s) 510, 959, 1052, 1235, 1306
FbaI TGATCA 1 cut(s) 1108
FblI GTMKAC 2 cut(s) 232, 689
Fnu4HI GCNGC 2 cut(s) 567, 1030
FokI GGATG 3 cut(s) 367, 471, 544
Fsp4HI GCNGC 2 cut(s) 567, 1030
FspBI CTAG 6 cut(s) 354, 422, 855, 1259, 1319, 1428
GlaI GCGC 2 cut(s) 551, 570
GluI GCNGC 2 cut(s) 567, 1030
HaeII RGCGCY 2 cut(s) 553, 572
HaeIII GGCC 5 cut(s) 540, 632, 806, 825, 847
HapII CCGG 3 cut(s) 302, 432, 588
HhaI GCGC 2 cut(s) 552, 571
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 5 cut(s) 514, 963, 1056, 1239, 1310
Hin6I GCGC 2 cut(s) 550, 569
HinP1I GCGC 2 cut(s) 550, 569
HincII GTYRAC 3 cut(s) 372, 682, 1050
HindII GTYRAC 3 cut(s) 372, 682, 1050
HindIII AAGCTT 1 cut(s) 1085
HinfI GANTC 6 cut(s) 237, 284, 296, 403, 880, 1151
HpaII CCGG 3 cut(s) 302, 432, 588
HphI GGTGA 5 cut(s) 589, 899, 948, 953, 1108
Hpy166II GTNNAC 8 cut(s) 233, 372, 597, 676, 682, 690, 944, 1050
Hpy188I TCNGA 9 cut(s) 47, 351, 447, 493, 784, 996, 1156, 1315, 1445
Hpy188III TCNNGA 3 cut(s) 203, 640, 1455
Hpy8I GTNNAC 8 cut(s) 233, 372, 597, 676, 682, 690, 944, 1050
HpyAV CCTTC 3 cut(s) 26, 610, 637
HpyCH4III ACNGT 4 cut(s) 41, 79, 702, 1172
HpyCH4IV ACGT 3 cut(s) 678, 863, 873
HpyCH4V TGCA 6 cut(s) 398, 774, 963, 1032, 1283, 1393
HpyF10VI GCNNNNNNNGC 1 cut(s) 844
HpyF3I CTNAG 4 cut(s) 317, 446, 790, 1123
HpySE526I ACGT 3 cut(s) 678, 863, 873
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 5 cut(s) 514, 963, 1056, 1239, 1310
HspAI GCGC 2 cut(s) 550, 569
KasI GGCGCC 1 cut(s) 549
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 9 cut(s) 346, 481, 577, 610, 814, 1108, 1255, 1381, 1445
LmnI GCTCC 2 cut(s) 1316, 1441
Lsp1109I GCAGC 2 cut(s) 578, 1016
LweI GCATC 1 cut(s) 389
MaeI CTAG 6 cut(s) 354, 422, 855, 1259, 1319, 1428
MaeII ACGT 3 cut(s) 678, 863, 873
MaeIII GTNAC 7 cut(s) 65, 73, 149, 460, 1058, 1073, 1148
MalI GATC 9 cut(s) 348, 483, 579, 612, 816, 1110, 1257, 1383, 1447
MboI GATC 9 cut(s) 346, 481, 577, 610, 814, 1108, 1255, 1381, 1445
MboII GAAGA 7 cut(s) 14, 17, 159, 187, 467, 526, 1376
MflI RGATCY 4 cut(s) 610, 814, 1255, 1445
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 8 cut(s) 123, 208, 245, 850, 1247, 1342, 1400, 1407
MluNI TGGCCA 1 cut(s) 540
Mly113I GGCGCC 1 cut(s) 550
MlyI GAGTC 1 cut(s) 1145
MmeI TCCRAC 3 cut(s) 324, 792, 849
MnlI CCTC 7 cut(s) 30, 39, 418, 499, 751, 795, 932
Mox20I TGGCCA 1 cut(s) 540
MscI TGGCCA 1 cut(s) 540
MseI TTAA 2 cut(s) 831, 1341
MslI CAYNNNNRTG 4 cut(s) 144, 958, 964, 1377
Msp20I TGGCCA 1 cut(s) 540
MspI CCGG 3 cut(s) 302, 432, 588
MspR9I CCNGG 8 cut(s) 132, 303, 507, 562, 588, 714, 808, 885
Mva1269I GAATGC 1 cut(s) 1163
MvaI CCWGG 6 cut(s) 132, 507, 562, 714, 808, 885
MwoI GCNNNNNNNGC 1 cut(s) 844
NarI GGCGCC 1 cut(s) 550
NciI CCSGG 2 cut(s) 303, 588
NdeII GATC 9 cut(s) 346, 481, 577, 610, 814, 1108, 1255, 1381, 1445
NlaIII CATG 5 cut(s) 514, 963, 1056, 1239, 1310
NlaIV GGNNCC 6 cut(s) 178, 551, 816, 919, 1312, 1358
NmuCI GTSAC 2 cut(s) 460, 1148
NspI RCATGY 1 cut(s) 1056
PceI AGGCCT 1 cut(s) 632
PciI ACATGT 1 cut(s) 1052
PctI GAATGC 1 cut(s) 1163
PfeI GAWTC 5 cut(s) 237, 284, 296, 403, 880
PkrI GCNGC 2 cut(s) 568, 1031
PleI GAGTC 1 cut(s) 1145
PluTI GGCGCC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 1145
PpuMI RGGWCCY 1 cut(s) 177
PscI ACATGT 1 cut(s) 1052
Psp5II RGGWCCY 1 cut(s) 177
Psp6I CCWGG 6 cut(s) 130, 505, 560, 712, 806, 883
PspEI GGTNACC 1 cut(s) 149
PspGI CCWGG 6 cut(s) 130, 505, 560, 712, 806, 883
PspN4I GGNNCC 6 cut(s) 178, 551, 816, 919, 1312, 1358
PspPI GGNCC 5 cut(s) 177, 804, 823, 917, 1020
PspPPI RGGWCCY 1 cut(s) 177
PstI CTGCAG 1 cut(s) 1395
PstNI CAGNNNCTG 1 cut(s) 1029
PsuI RGATCY 4 cut(s) 610, 814, 1255, 1445
RsaI GTAC 6 cut(s) 109, 129, 621, 677, 1180, 1432
RsaNI GTAC 6 cut(s) 108, 128, 620, 676, 1179, 1431
RseI CAYNNNNRTG 4 cut(s) 144, 958, 964, 1377
SaqAI TTAA 2 cut(s) 831, 1341
SatI GCNGC 2 cut(s) 567, 1030
Sau3AI GATC 9 cut(s) 346, 481, 577, 610, 814, 1108, 1255, 1381, 1445
Sau96I GGNCC 5 cut(s) 177, 804, 823, 917, 1020
SchI GAGTC 1 cut(s) 1145
ScrFI CCNGG 8 cut(s) 132, 303, 507, 562, 588, 714, 808, 885
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 1391
SfoI GGCGCC 1 cut(s) 551
SinI GGWCC 3 cut(s) 177, 917, 1020
SmiMI CAYNNNNRTG 4 cut(s) 144, 958, 964, 1377
Sse9I AATT 8 cut(s) 123, 208, 245, 850, 1247, 1342, 1400, 1407
SseBI AGGCCT 1 cut(s) 632
SsiI CCGC 3 cut(s) 915, 1007, 1354
SspDI GGCGCC 1 cut(s) 549
SspMI CTAG 6 cut(s) 354, 422, 855, 1259, 1319, 1428
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 8 cut(s) 130, 301, 505, 560, 586, 712, 806, 883
StyI CCWWGG 2 cut(s) 172, 226
TaaI ACNGT 4 cut(s) 41, 79, 702, 1172
TaiI ACGT 3 cut(s) 681, 866, 876
TaqI TCGA 1 cut(s) 480
TasI AATT 8 cut(s) 123, 208, 245, 850, 1247, 1342, 1400, 1407
TatI WGTACW 2 cut(s) 1178, 1430
TfiI GAWTC 5 cut(s) 237, 284, 296, 403, 880
Tru1I TTAA 2 cut(s) 831, 1341
Tru9I TTAA 2 cut(s) 831, 1341
TscAI CASTG 6 cut(s) 44, 84, 151, 328, 781, 1030
TseFI GTSAC 2 cut(s) 460, 1148
TseI GCWGC 2 cut(s) 566, 1029
Tsp45I GTSAC 2 cut(s) 460, 1148
TspDTI ATGAA 7 cut(s) 17, 174, 416, 527, 726, 1295, 1412
TspGWI ACGGA 3 cut(s) 373, 645, 1327
TspRI CASTG 6 cut(s) 44, 84, 151, 328, 781, 1030
VpaK11BI GGWCC 3 cut(s) 177, 917, 1020
XapI RAATTY 4 cut(s) 208, 245, 850, 1400
XceI RCATGY 1 cut(s) 1056
XmiI GTMKAC 2 cut(s) 232, 689
XspI CTAG 6 cut(s) 354, 422, 855, 1259, 1319, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.