RchiOBHm_Chr2g0145911

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000114
Physical Location & Seq
Reverse (-)
63635067 .. 63635882
816 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51573

Sequence Viewer

Length: 816 bp
ATGCAGTACTCCTTTCTCCCTTTCTTTTTTATCACTTACTTTTTTTCAATAATCAACCTTCCATTCAGTCTCCGTGCCGATGATACAGTAGAATATGCCAACTGCAGCCAACCTATTACCTGCGGGAGCGTCAAAAGCAACATCTCTTACCCCTTTTGGGGGGCGAACCGAGCCGAATACTGTGGCAAATCTGGGTACGAGGTCACATGCCAAGCCGATGCCCCAATGATCACCATGAGGAATATCACTTTCAGAATTCTTGACATGAGTAGTACAACAACTCCTACTGTAAAAGTTGCTAGGCAGGATTACTGGGGAACTATCTGTCCCCCGACATATGTTCCCACAAACCTCATCTTCTCTCTCTTCAATTACTCTTCTGGGCTTCTGAACGTGTCTTTTTGGTACGGATGCAATACAAACGTAACAGCAGTCGCTGGTAATTCGCATTTCTGCAACAGTAGCGTCACTGCTACCTATCTCACACAGACACAGACGAGAGCTAGTAATGCCTCAGTTGATCCAGTTACTACGGGCGCCTGTCAATATAAGGTTATGGTTCCGGTATTTGAATCCGCTTCTGAGGCTCTGGACAACAATGCTACAGATATTCAGACTGCCATAGATGGTGGTTTTGAATTGGATGTGCTAGATGATGATACTGGCCTGTGCGAAATTTGCGTGGCATCAGGAGGAGTTTGTGGGCAAGACTCTACTAGTGCTCAATTCATTTGCTTTTGCCAGGATTCATCTTCAACAGCCACATGTTCTGAAAACTCTTCAACAATTCCAACTTCATCAGGTACAGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

271

Amino Acids

29.25

Weight (kDa)

4.16

Isoelectric Point (pI)

28.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 35 - 100 4.1e-13 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 160 - 249 2e-15 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 536
AciI CCGC 2 cut(s) 123, 576
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 2 cut(s) 255, 675
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 6 cut(s) 8, 197, 274, 407, 805, 811
AfiI CCNNNNNNNGG 3 cut(s) 157, 158, 159
AflIII ACRYGT 2 cut(s) 393, 764
AgsI TTSAA 6 cut(s) 48, 370, 572, 638, 756, 783
AhlI ACTAGT 1 cut(s) 716
AjnI CCWGG 1 cut(s) 741
AloI GAACNNNNNNTCC 2 cut(s) 310, 342
AluBI AGCT 1 cut(s) 503
AluI AGCT 1 cut(s) 503
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 515
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 1 cut(s) 664
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 2 cut(s) 255, 675
AspLEI GCGC 1 cut(s) 539
AsuHPI GGTGA 1 cut(s) 223
BanI GGYRCC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 620
BciT130I CCWGG 1 cut(s) 743
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 4 cut(s) 300, 504, 650, 717
BfmI CTRYAG 2 cut(s) 103, 603
BfoI RGCGCY 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 743
BmiI GGNNCC 2 cut(s) 538, 561
BmrFI CCNGG 1 cut(s) 743
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 208, 401, 695
BmuI ACTGGG 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 813
BsaHI GRCGYC 1 cut(s) 537
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 158, 159
Bse1I ACTGG 3 cut(s) 317, 524, 667
BseBI CCWGG 1 cut(s) 743
BseGI GGATG 2 cut(s) 416, 649
BseLI CCNNNNNNNGG 3 cut(s) 157, 158, 159
BseMII CTCAG 2 cut(s) 528, 573
BseNI ACTGG 3 cut(s) 317, 524, 667
BseRI GAGGAG 1 cut(s) 708
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 1 cut(s) 666
BshNI GGYRCC 1 cut(s) 536
BsiHKAI GWGCWC 1 cut(s) 724
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 157, 158, 159
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 724
Bsp143I GATC 2 cut(s) 228, 520
BspACI CCGC 2 cut(s) 123, 576
BspANI GGCC 1 cut(s) 666
BspCNI CTCAG 2 cut(s) 527, 574
BspLI GGNNCC 2 cut(s) 538, 561
BspMAI CTGCAG 1 cut(s) 107
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 536
BsrI ACTGG 3 cut(s) 317, 524, 667
BssMI GATC 2 cut(s) 228, 520
BssNI GRCGYC 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 4 cut(s) 88, 182, 289, 461
Bst6I CTCTTC 3 cut(s) 371, 382, 784
BstACI GRCGYC 1 cut(s) 537
BstBAI YACGTR 1 cut(s) 813
BstDEI CTNAG 2 cut(s) 514, 582
BstF5I GGATG 2 cut(s) 416, 649
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 2 cut(s) 231, 523
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 228, 520
BstMWI GCNNNNNNNGC 6 cut(s) 135, 170, 462, 509, 584, 678
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 2 cut(s) 210, 768
BstSCI CCNGG 1 cut(s) 741
BstSFI CTRYAG 2 cut(s) 103, 603
BstSNI TACGTA 1 cut(s) 813
BstV1I GCAGC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 666
BtsCI GGATG 2 cut(s) 416, 649
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
BveI ACCTGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 1 cut(s) 539
CseI GACGC 2 cut(s) 118, 454
Csp6I GTAC 6 cut(s) 7, 196, 273, 406, 804, 810
CviAII CATG 4 cut(s) 207, 235, 265, 765
CviJI RGCY 8 cut(s) 108, 173, 215, 385, 503, 587, 666, 761
CviKI_1 RGCY 8 cut(s) 108, 173, 215, 385, 503, 587, 666, 761
CviQI GTAC 6 cut(s) 7, 196, 273, 406, 804, 810
DdeI CTNAG 2 cut(s) 514, 582
DinI GGCGCC 1 cut(s) 538
DpnI GATC 2 cut(s) 230, 522
DpnII GATC 2 cut(s) 228, 520
Eam1104I CTCTTC 3 cut(s) 371, 382, 784
EarI CTCTTC 3 cut(s) 371, 382, 784
Eco105I TACGTA 1 cut(s) 813
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 741
EgeI GGCGCC 1 cut(s) 538
EheI GGCGCC 1 cut(s) 538
FaeI CATG 4 cut(s) 210, 238, 268, 768
FaqI GGGAC 1 cut(s) 312
FatI CATG 4 cut(s) 206, 234, 264, 764
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 2 cut(s) 423, 656
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 4 cut(s) 300, 504, 650, 717
GlaI GCGC 1 cut(s) 538
GluI GCNGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 1 cut(s) 666
HapII CCGG 1 cut(s) 563
HgaI GACGC 2 cut(s) 118, 454
HhaI GCGC 1 cut(s) 539
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 4 cut(s) 210, 238, 268, 768
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HinfI GANTC 3 cut(s) 572, 710, 746
HpaII CCGG 1 cut(s) 563
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 254, 390, 583, 615, 772
Hpy188III TCNNGA 3 cut(s) 260, 590, 690
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 4 cut(s) 88, 182, 289, 461
HpyCH4IV ACGT 3 cut(s) 393, 423, 812
HpyCH4V TGCA 4 cut(s) 4, 105, 414, 456
HpyF10VI GCNNNNNNNGC 6 cut(s) 135, 170, 462, 509, 584, 678
HpyF3I CTNAG 2 cut(s) 514, 582
HpySE526I ACGT 3 cut(s) 393, 423, 812
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 4 cut(s) 210, 238, 268, 768
HspAI GCGC 1 cut(s) 537
KasI GGCGCC 1 cut(s) 536
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 2 cut(s) 228, 520
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 3 cut(s) 208, 401, 695
MaeI CTAG 4 cut(s) 300, 504, 650, 717
MaeII ACGT 3 cut(s) 393, 423, 812
MaeIII GTNAC 4 cut(s) 202, 424, 466, 526
MalI GATC 2 cut(s) 230, 522
MboI GATC 2 cut(s) 228, 520
MboII GAAGA 5 cut(s) 349, 358, 369, 744, 771
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 7 cut(s) 255, 370, 442, 638, 675, 725, 786
Mly113I GGCGCC 1 cut(s) 537
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 815
MnlI CCTC 6 cut(s) 193, 231, 362, 523, 577, 686
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 1 cut(s) 743
MvaI CCWGG 1 cut(s) 743
MwoI GCNNNNNNNGC 6 cut(s) 135, 170, 462, 509, 584, 678
NarI GGCGCC 1 cut(s) 537
NdeI CATATG 1 cut(s) 337
NdeII GATC 2 cut(s) 228, 520
NlaIII CATG 4 cut(s) 210, 238, 268, 768
NlaIV GGNNCC 2 cut(s) 538, 561
NmuCI GTSAC 2 cut(s) 202, 466
NspI RCATGY 2 cut(s) 210, 768
PciI ACATGT 1 cut(s) 764
PfeI GAWTC 2 cut(s) 572, 746
PkrI GCNGC 1 cut(s) 107
PleI GAGTC 1 cut(s) 704
PluTI GGCGCC 1 cut(s) 540
PpsI GAGTC 1 cut(s) 704
Ppu21I YACGTR 1 cut(s) 813
PscI ACATGT 1 cut(s) 764
Psp6I CCWGG 1 cut(s) 741
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 538, 561
PstI CTGCAG 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 437
RsaI GTAC 6 cut(s) 8, 197, 274, 407, 805, 811
RsaNI GTAC 6 cut(s) 7, 196, 273, 406, 804, 810
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 2 cut(s) 228, 520
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 1 cut(s) 743
SduI GDGCHC 1 cut(s) 724
SfaNI GCATC 3 cut(s) 208, 401, 695
SfcI CTRYAG 2 cut(s) 103, 603
SfoI GGCGCC 1 cut(s) 538
SnaBI TACGTA 1 cut(s) 813
SpeI ACTAGT 1 cut(s) 716
Sse9I AATT 7 cut(s) 255, 370, 442, 638, 675, 725, 786
SsiI CCGC 2 cut(s) 123, 576
SspDI GGCGCC 1 cut(s) 536
SspMI CTAG 4 cut(s) 300, 504, 650, 717
StyD4I CCNGG 1 cut(s) 741
TaaI ACNGT 4 cut(s) 88, 182, 289, 461
TaiI ACGT 3 cut(s) 396, 426, 815
TasI AATT 7 cut(s) 255, 370, 442, 638, 675, 725, 786
TatI WGTACW 2 cut(s) 6, 272
TfiI GAWTC 2 cut(s) 572, 746
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 2 cut(s) 202, 466
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 2 cut(s) 202, 466
TspDTI ATGAA 3 cut(s) 718, 738, 786
TspGWI ACGGA 2 cut(s) 62, 423
TspRI CASTG 1 cut(s) 475
XapI RAATTY 2 cut(s) 255, 675
XceI RCATGY 2 cut(s) 210, 768
XspI CTAG 4 cut(s) 300, 504, 650, 717
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.