Rroxscaffold_2G00100370

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
22251641 .. 22252449
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100370.1

Sequence Viewer

Length: 783 bp
ATGCAGTACTCCTTTCTGCCTTTCCTTTTGATCACTTCCTTTTTTTCAATCAACCTTCCATTCAATCTCTGTGCCAATGATACAGTGGAATATGACAACTGCAGCCAACTATTGCCTGCCTGCGGGAGCGTCAAAAGCAACATCTCTTACCCCTTTTGGGGAGCGAACCGAGCCGAATACTGTGGAAAATCTGGGTTCGAGGTCACATGCCAAGCCGATGTCCCAATGATCACCATGAGGAATATCAATTTCAGAATTCTGGACATGAGCAATAGTACTGCTACAACTCCGACCGTAAAAGTTGCTAGGCAGGATTACTGGGGAACTATCTGTCCCTCGACATATGAACCCACAAACCTCGACTTCTCTCTCTTCACCTACTCTTCTGGGCTTCTGAACGTGTCTTTTTGGTACGGATGCAATACAGCCGCAGCAGCCACAGATAATTCGCTTGTCTGCAACAGTAGCGTCACTGCTACCTATCTCACACCGACGAAAGCTAGTAATGTCCCAGTTGATCCAGTTATGGTTCCGGTATTTGAATCCGCTTCTGAGGCTCTGGACAACAATGCTGCAGATATTCATACTGCCATAAATGGTGGTTTTGAATTGGATGTGCTAAATGCTGATACTGGCCTTTGCAACAGTTGCTTGTCATCAGGGGGAGTTTGCGGGCAAAACAATACTCGTGCTGACGAATTCATGTGCTTTTGCCAGACTGCTTCATCTTCGACAACCATGTGTACTGAAAACTCTTCACCAAATCCAAGTTCAGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

260

Amino Acids

27.94

Weight (kDa)

4.14

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 34 - 95 3.2e-13 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 140 - 239 2.4e-11 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 123, 429, 546, 672
AclWI GGATC 1 cut(s) 512
AcsI RAATTY 2 cut(s) 255, 698
AfaI GTAC 5 cut(s) 8, 277, 413, 745, 778
AfiI CCNNNNNNNGG 4 cut(s) 122, 157, 158, 773
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 4 cut(s) 48, 64, 542, 608
AjuI GAANNNNNNNTTGG 1 cut(s) 754
AloI GAACNNNNNNTCC 2 cut(s) 316, 348
AluBI AGCT 1 cut(s) 500
AluI AGCT 1 cut(s) 500
AlwI GGATC 1 cut(s) 512
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 4 cut(s) 102, 431, 434, 572
ApoI RAATTY 2 cut(s) 255, 698
AsuHPI GGTGA 3 cut(s) 223, 367, 750
BauI CACGAG 1 cut(s) 687
BbvI GCAGC 4 cut(s) 114, 443, 446, 559
BclI TGATCA 2 cut(s) 30, 228
BfaI CTAG 2 cut(s) 306, 501
BfmI CTRYAG 2 cut(s) 100, 573
BisI GCNGC 5 cut(s) 103, 429, 432, 435, 573
BlsI GCNGC 5 cut(s) 104, 430, 433, 436, 574
BmcAI AGTACT 2 cut(s) 8, 277
BmiI GGNNCC 1 cut(s) 531
BmrI ACTGGG 2 cut(s) 328, 506
BmsI GCATC 1 cut(s) 407
BmuI ACTGGG 2 cut(s) 328, 506
BsaAI YACGTR 1 cut(s) 780
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 157, 158, 773
Bse1I ACTGG 4 cut(s) 323, 512, 521, 637
BseGI GGATG 2 cut(s) 422, 619
BseLI CCNNNNNNNGG 4 cut(s) 122, 157, 158, 773
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 4 cut(s) 323, 512, 521, 637
BseXI GCAGC 4 cut(s) 114, 443, 446, 559
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 636
BsiEI CGRYCG 1 cut(s) 294
BsiSI CCGG 1 cut(s) 533
BslFI GGGAC 3 cut(s) 206, 318, 494
BslI CCNNNNNNNGG 4 cut(s) 122, 157, 158, 773
BsmFI GGGAC 3 cut(s) 206, 318, 494
BsnI GGCC 1 cut(s) 636
Bsp143I GATC 3 cut(s) 30, 228, 517
BspACI CCGC 4 cut(s) 123, 429, 546, 672
BspANI GGCC 1 cut(s) 636
BspCNI CTCAG 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 531
BspMAI CTGCAG 2 cut(s) 104, 577
BspPI GGATC 1 cut(s) 512
BsrI ACTGG 4 cut(s) 323, 512, 521, 637
BssMI GATC 3 cut(s) 30, 228, 517
BssSI CACGAG 1 cut(s) 687
Bst2BI CACGAG 1 cut(s) 687
Bst4CI ACNGT 5 cut(s) 85, 182, 295, 464, 647
Bst6I CTCTTC 3 cut(s) 377, 388, 760
BstAPI GCANNNNNTGC 1 cut(s) 648
BstBAI YACGTR 1 cut(s) 780
BstC8I GCNNGC 3 cut(s) 117, 121, 674
BstDEI CTNAG 1 cut(s) 552
BstF5I GGATG 2 cut(s) 422, 619
BstKTI GATC 3 cut(s) 33, 231, 520
BstMBI GATC 3 cut(s) 30, 228, 517
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 6 cut(s) 135, 170, 434, 465, 554, 648
BstNSI RCATGY 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 100, 573
BstSNI TACGTA 1 cut(s) 780
BstV1I GCAGC 4 cut(s) 114, 443, 446, 559
BsuRI GGCC 1 cut(s) 636
BtsCI GGATG 2 cut(s) 422, 619
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 90, 471
Cac8I GCNNGC 3 cut(s) 117, 121, 674
CseI GACGC 2 cut(s) 118, 457
Csp6I GTAC 5 cut(s) 7, 276, 412, 744, 777
CviAII CATG 5 cut(s) 207, 235, 265, 703, 739
CviJI RGCY 9 cut(s) 105, 173, 215, 391, 428, 437, 500, 557, 636
CviKI_1 RGCY 9 cut(s) 105, 173, 215, 391, 428, 437, 500, 557, 636
CviQI GTAC 5 cut(s) 7, 276, 412, 744, 777
DdeI CTNAG 1 cut(s) 552
DpnI GATC 3 cut(s) 32, 230, 519
DpnII GATC 3 cut(s) 30, 228, 517
Eam1104I CTCTTC 3 cut(s) 377, 388, 760
EarI CTCTTC 3 cut(s) 377, 388, 760
Eco105I TACGTA 1 cut(s) 780
EcoRI GAATTC 2 cut(s) 255, 698
FaeI CATG 5 cut(s) 210, 238, 268, 706, 742
FaqI GGGAC 3 cut(s) 206, 318, 494
FatI CATG 5 cut(s) 206, 234, 264, 702, 738
FauI CCCGC 2 cut(s) 116, 665
FauNDI CATATG 1 cut(s) 343
FbaI TGATCA 2 cut(s) 30, 228
Fnu4HI GCNGC 5 cut(s) 103, 429, 432, 435, 573
FokI GGATG 2 cut(s) 429, 626
Fsp4HI GCNGC 5 cut(s) 103, 429, 432, 435, 573
FspBI CTAG 2 cut(s) 306, 501
GluI GCNGC 5 cut(s) 103, 429, 432, 435, 573
HaeIII GGCC 1 cut(s) 636
HapII CCGG 1 cut(s) 533
HgaI GACGC 2 cut(s) 118, 457
Hin1II CATG 5 cut(s) 210, 238, 268, 706, 742
HinfI GANTC 1 cut(s) 542
HpaII CCGG 1 cut(s) 533
HphI GGTGA 3 cut(s) 223, 367, 750
Hpy166II GTNNAC 1 cut(s) 744
Hpy188I TCNGA 4 cut(s) 254, 291, 396, 553
Hpy188III TCNNGA 2 cut(s) 260, 560
Hpy8I GTNNAC 1 cut(s) 744
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 5 cut(s) 85, 182, 295, 464, 647
HpyCH4IV ACGT 2 cut(s) 399, 779
HpyCH4V TGCA 6 cut(s) 4, 102, 420, 459, 575, 642
HpyF10VI GCNNNNNNNGC 6 cut(s) 135, 170, 434, 465, 554, 648
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 2 cut(s) 399, 779
Hsp92II CATG 5 cut(s) 210, 238, 268, 706, 742
Ksp22I TGATCA 2 cut(s) 30, 228
Kzo9I GATC 3 cut(s) 30, 228, 517
LmnI GCTCC 2 cut(s) 126, 161
Lsp1109I GCAGC 4 cut(s) 114, 443, 446, 559
LweI GCATC 1 cut(s) 407
MaeI CTAG 2 cut(s) 306, 501
MaeII ACGT 2 cut(s) 399, 779
MaeIII GTNAC 2 cut(s) 202, 469
MalI GATC 3 cut(s) 32, 230, 519
MboI GATC 3 cut(s) 30, 228, 517
MboII GAAGA 4 cut(s) 364, 375, 720, 747
MluCI AATT 5 cut(s) 247, 255, 445, 608, 698
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 5 cut(s) 193, 231, 346, 368, 547
MspI CCGG 1 cut(s) 533
MwoI GCNNNNNNNGC 6 cut(s) 135, 170, 434, 465, 554, 648
NdeI CATATG 1 cut(s) 343
NdeII GATC 3 cut(s) 30, 228, 517
NlaIII CATG 5 cut(s) 210, 238, 268, 706, 742
NlaIV GGNNCC 1 cut(s) 531
NmuCI GTSAC 2 cut(s) 202, 469
NspI RCATGY 1 cut(s) 210
PfeI GAWTC 1 cut(s) 542
PkrI GCNGC 5 cut(s) 104, 430, 433, 436, 574
Ppu21I YACGTR 1 cut(s) 780
PspN4I GGNNCC 1 cut(s) 531
PstI CTGCAG 2 cut(s) 104, 577
RsaI GTAC 5 cut(s) 8, 277, 413, 745, 778
RsaNI GTAC 5 cut(s) 7, 276, 412, 744, 777
SatI GCNGC 5 cut(s) 103, 429, 432, 435, 573
Sau3AI GATC 3 cut(s) 30, 228, 517
ScaI AGTACT 2 cut(s) 8, 277
SetI ASST 9 cut(s) 57, 204, 360, 380, 402, 482, 502, 778, 782
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 2 cut(s) 100, 573
SnaBI TACGTA 1 cut(s) 780
Sse9I AATT 5 cut(s) 247, 255, 445, 608, 698
SsiI CCGC 4 cut(s) 123, 429, 546, 672
SspMI CTAG 2 cut(s) 306, 501
TaaI ACNGT 5 cut(s) 85, 182, 295, 464, 647
TaiI ACGT 2 cut(s) 402, 782
TaqI TCGA 4 cut(s) 198, 338, 360, 731
TasI AATT 5 cut(s) 247, 255, 445, 608, 698
TatI WGTACW 3 cut(s) 6, 275, 743
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 542
TscAI CASTG 2 cut(s) 90, 478
TseFI GTSAC 2 cut(s) 202, 469
TseI GCWGC 4 cut(s) 102, 431, 434, 572
Tsp45I GTSAC 2 cut(s) 202, 469
TspDTI ATGAA 4 cut(s) 360, 572, 691, 714
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 2 cut(s) 90, 478
XapI RAATTY 2 cut(s) 255, 698
XceI RCATGY 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 2 cut(s) 306, 501
ZrmI AGTACT 2 cut(s) 8, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.