Rh2DG578600

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000114
Physical Location & Seq
Forward (+)
80905341 .. 80907436
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG578600.1

Sequence Viewer

Length: 1647 bp
ATGGAGTGGCTCTTCCCTTACCTTGTTATACTGCTTCCCTCTCTGATCTTTTCATTCTGTACCAGCCAAGACAACTTAGTACCGGGGAAATCTATCAGTGCAAACCAGACCTTGATTTCTTCCAATGGGACCTTTGCCTTAGGCTTCTTCAGACCTGAAAATTCAACTAAATACTTCCTTGGTATATGGTACGACAAACTCCCAAAGTTGACAGTAGTTTGGGTTGCTAACAGAGAATCCCCGCTTGATTCTCCGGGTGTTTTTACACTTCGTACTGATGGAAATCTTATGGTGTTGTTAGACGTCGAAGCGAGCGCTCCAGTCTGGTCAACTAATTTAGTATTGGATGCTGCAAAGAATGGCACAACTGGTTTACTAACGGATACTGGAAACCTTGTTCTGAGATCTGGGGAAGAAACTTTGTGGGAGAGCTTCGATCATCCCTCTGATACAATTCTGCCTGGCATGAAGATTAGCTTGAACAAACTGACTGGCCAACAAAGCTGCCTCACATCCTGGGCAACGCTTGATGATCCACGACCAGGAAAGTTCACCTTATGCATTGATCCTAAAGGGCTGCAGGCTTATATCTGGGAGGACAATAGTATTCAAAAATGGAGAATTGCTATGTACATTGGCAGAGACTCAAGAAGTGTCTTTGGAAATCCAGGTGGATCAGCCTTTTCCCTATCATACAACTTCGATGTTGATAAGGCTTATCTTACTTACAGTGTCTCGAATAGCTCACTGAAAATGAGGGTCTTGTTGAATCCTTCAGGGCAGATTGAGCTGCTGCTGTGGATCAGTAAAACTTGGTATCAACTGTGGAAGGCACCTGCTGATAACTGTGATTTTTATGATCGTTGCGGTCCATATGGTGCCTGTCGTAAAAATGAAAGCCTCTCATCACCGTGCAAGTGCTTGACAGGTTTTAAAGCCAAATTTTCAAACCAATGGGATATGCAGGATTGGTCCAGTGGCTGCGTTAGGGAAAAAGCATTGACATGTAGTAACGCAATGGAAGGGTACTTCTCAAAGTTAGAAGGGGTGAAACTACCAGATCATTCTGTTATTTTTGAGGATAGGAGCAAGGATGAGTGCAACTCCGAATGTCATCAGAGTTGTTCTTGCACGGCTTATGCTTATGTAAATGCGACGGAAGGAAGTAATACTGGGACTTGTATGCAATGGTTTAGTGACTTAATCGATCTAGTAGAGAAATATGATATTATTACTACACATGATATTTTCATTCGCGTTCATGACTCCAAACTAGGAAACAAGGGTCTCTTTCATAGTTCCTCGAAGAGGTCCATAGTAATTGCAATAGTACTCTCAGCTGCAGCTGGATTGCTTACAATAACTTTTGGTTGTTTCTTGTGGAAGAATTTGGGAAAGGAAGGGAGGATAGCAGGAAGAATGAGTGAGATTATAAGAAATGTTGGTGCAGGAGGTGGGAAAAATGATACAGAACTACCACTCTTCGGTTTAGGTCGTATATTAGCTGCTACAAACAACTTCTCTGAAGCAAATAAGCTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGTGATGACCCTTTTATACTATGCTGTTAATGCAGTTCTTCTTCTTCCTTTTCTTTTCCTCGATACTTTCGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

548

Amino Acids

60.78

Weight (kDa)

5.97

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 173 7.6e-29 D-mannose binding lectin
S_locus_glycop PF00954 230 - 314 4.1e-20 S-locus glycoprotein domain
PAN_2 PF08276 341 - 404 2e-13 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1433, 1566
AarI CACCTGC 1 cut(s) 844
AatII GACGTC 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 844
AccB1I GGYRCC 2 cut(s) 832, 878
AccII CGCG 1 cut(s) 1257
AciI CCGC 2 cut(s) 242, 867
AclWI GGATC 4 cut(s) 527, 560, 682, 809
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 3 cut(s) 160, 941, 1387
AcuI CTGAAG 3 cut(s) 133, 759, 1545
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 7 cut(s) 61, 81, 191, 274, 632, 1028, 1332
AfeI AGCGCT 1 cut(s) 316
AfiI CCNNNNNNNGG 3 cut(s) 542, 1308, 1484
AflIII ACRYGT 1 cut(s) 1004
AgsI TTSAA 5 cut(s) 165, 481, 611, 769, 948
AjnI CCWGG 4 cut(s) 460, 515, 541, 667
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 9 cut(s) 432, 477, 504, 744, 790, 1340, 1346, 1505, 1537
AluI AGCT 9 cut(s) 432, 477, 504, 744, 790, 1340, 1346, 1505, 1537
Alw26I GTCTC 3 cut(s) 636, 739, 1292
AlwI GGATC 4 cut(s) 527, 560, 682, 809
AlwNI CAGNNNCTG 1 cut(s) 981
Aor51HI AGCGCT 1 cut(s) 316
AoxI GGCC 2 cut(s) 493, 1555
ApeKI GCWGC 9 cut(s) 350, 504, 577, 790, 793, 981, 1340, 1343, 1505
ApoI RAATTY 3 cut(s) 160, 941, 1387
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 5 cut(s) 129, 869, 972, 1311, 1556
AsuC2I CCSGG 2 cut(s) 84, 255
AsuHPI GGTGA 4 cut(s) 544, 900, 1060, 1582
AvaII GGWCC 4 cut(s) 129, 869, 972, 1311
AxyI CCTNAGG 1 cut(s) 139
BaeI ACNNNNGTAYC 1 cut(s) 1623
BalI TGGCCA 1 cut(s) 495
BanI GGYRCC 2 cut(s) 832, 878
BbvI GCAGC 9 cut(s) 337, 491, 564, 777, 780, 968, 1327, 1355, 1492
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 1149
BciT130I CCWGG 4 cut(s) 462, 517, 543, 669
BciVI GTATCC 1 cut(s) 376
BcnI CCSGG 2 cut(s) 84, 255
BcoDI GTCTC 3 cut(s) 636, 739, 1292
BfaI CTAG 2 cut(s) 1211, 1274
BfmI CTRYAG 2 cut(s) 578, 1341
BfoI RGCGCY 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 844
BfuI GTATCC 1 cut(s) 376
BglII AGATCT 1 cut(s) 404
BisI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1341, 1344, 1506
BlsI GCNGC 9 cut(s) 352, 506, 579, 792, 795, 983, 1342, 1345, 1507
BmcAI AGTACT 1 cut(s) 1332
Bme1390I CCNGG 6 cut(s) 84, 255, 462, 517, 543, 669
Bme18I GGWCC 4 cut(s) 129, 869, 972, 1311
BmgT120I GGNCC 5 cut(s) 129, 869, 972, 1311, 1556
BmiI GGNNCC 3 cut(s) 130, 834, 880
BmrFI CCNGG 6 cut(s) 84, 255, 462, 517, 543, 669
BmrI ACTGGG 1 cut(s) 1182
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 1182
BplI GAGNNNNNCTC 2 cut(s) 1088, 1120
BpmI CTGGAG 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 2 cut(s) 84, 255
Bsa29I ATCGAT 1 cut(s) 1206
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 1292
BsaJI CCNNGG 3 cut(s) 83, 178, 516
Bsc4I CCNNNNNNNGG 3 cut(s) 542, 1308, 1484
Bse1I ACTGG 6 cut(s) 320, 373, 391, 496, 975, 1177
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 2 cut(s) 1023, 1193
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 4 cut(s) 462, 517, 543, 669
BseCI ATCGAT 1 cut(s) 1206
BseDI CCNNGG 3 cut(s) 83, 178, 516
BseGI GGATG 4 cut(s) 352, 439, 512, 1099
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 542, 1308, 1484
BseMI GCAATG 2 cut(s) 1023, 1193
BseMII CTCAG 2 cut(s) 392, 1350
BseNI ACTGG 6 cut(s) 320, 373, 391, 496, 975, 1177
BseXI GCAGC 9 cut(s) 337, 491, 564, 777, 780, 968, 1327, 1355, 1492
BsgI GTGCAG 1 cut(s) 1467
Bsh1236I CGCG 1 cut(s) 1257
BshFI GGCC 2 cut(s) 495, 1557
BshNI GGYRCC 2 cut(s) 832, 878
BshVI ATCGAT 1 cut(s) 1206
BsiSI CCGG 2 cut(s) 83, 254
BslFI GGGAC 2 cut(s) 142, 1189
BslI CCNNNNNNNGG 3 cut(s) 542, 1308, 1484
BsmAI GTCTC 3 cut(s) 636, 739, 1292
BsmFI GGGAC 2 cut(s) 142, 1189
BsnI GGCC 2 cut(s) 495, 1557
Bso31I GGTCTC 1 cut(s) 1292
Bsp1407I TGTACA 1 cut(s) 630
BspACI CCGC 2 cut(s) 242, 867
BspANI GGCC 2 cut(s) 495, 1557
BspCNI CTCAG 2 cut(s) 393, 1349
BspDI ATCGAT 1 cut(s) 1206
BspFNI CGCG 1 cut(s) 1257
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 3 cut(s) 130, 834, 880
BspMAI CTGCAG 2 cut(s) 582, 1345
BspMI ACCTGC 1 cut(s) 844
BspPI GGATC 4 cut(s) 527, 560, 682, 809
BspQI GCTCTTC 1 cut(s) 17
BspT107I GGYRCC 2 cut(s) 832, 878
BspTNI GGTCTC 1 cut(s) 1292
BsrDI GCAATG 2 cut(s) 1023, 1193
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 6 cut(s) 320, 373, 391, 496, 975, 1177
BssECI CCNNGG 3 cut(s) 83, 178, 516
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 4 cut(s) 462, 517, 543, 669
Bst4CI ACNGT 5 cut(s) 214, 731, 825, 848, 912
Bst6I CTCTTC 3 cut(s) 17, 1301, 1487
BstACI GRCGYC 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 630
BstC8I GCNNGC 2 cut(s) 313, 582
BstDEI CTNAG 4 cut(s) 76, 139, 401, 1336
BstENI CCTNNNNNAGG 1 cut(s) 1306
BstF5I GGATG 4 cut(s) 352, 439, 512, 1099
BstFNI CGCG 1 cut(s) 1257
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 3 cut(s) 636, 739, 1292
BstMWI GCNNNNNNNGC 3 cut(s) 501, 787, 1598
BstNI CCWGG 4 cut(s) 462, 517, 543, 669
BstNSI RCATGY 1 cut(s) 1008
BstSCI CCNGG 6 cut(s) 82, 253, 460, 515, 541, 667
BstSFI CTRYAG 2 cut(s) 578, 1341
BstUI CGCG 1 cut(s) 1257
BstV1I GCAGC 9 cut(s) 337, 491, 564, 777, 780, 968, 1327, 1355, 1492
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
Bsu15I ATCGAT 1 cut(s) 1206
Bsu36I CCTNAGG 1 cut(s) 139
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 495, 1557
BsuTUI ATCGAT 1 cut(s) 1206
BtsCI GGATG 4 cut(s) 352, 439, 512, 1099
BtsIMutI CAGTG 4 cut(s) 103, 736, 746, 982
BveI ACCTGC 1 cut(s) 844
Cac8I GCNNGC 2 cut(s) 313, 582
CaiI CAGNNNCTG 1 cut(s) 981
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 5 cut(s) 129, 869, 972, 1311, 1556
ClaI ATCGAT 1 cut(s) 1206
Csp6I GTAC 7 cut(s) 60, 80, 190, 273, 631, 1027, 1331
CviAII CATG 4 cut(s) 466, 1005, 1241, 1262
CviQI GTAC 7 cut(s) 60, 80, 190, 273, 631, 1027, 1331
DdeI CTNAG 4 cut(s) 76, 139, 401, 1336
DraI TTTAAA 1 cut(s) 934
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 3 cut(s) 17, 1301, 1487
EarI CTCTTC 3 cut(s) 17, 1301, 1487
Eco130I CCWWGG 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 1292
Eco47I GGWCC 4 cut(s) 129, 869, 972, 1311
Eco47III AGCGCT 1 cut(s) 316
Eco57I CTGAAG 3 cut(s) 133, 759, 1545
Eco81I CCTNAGG 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 1306
EcoO109I RGGNCCY 1 cut(s) 129
EcoRII CCWGG 4 cut(s) 460, 515, 541, 667
EcoT14I CCWWGG 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 4 cut(s) 469, 1008, 1244, 1265
FalI AAGNNNNNCTT 6 cut(s) 461, 493, 539, 571, 1274, 1306
FaqI GGGAC 2 cut(s) 142, 1189
FatI CATG 4 cut(s) 465, 1004, 1240, 1261
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 874
Fnu4HI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1341, 1344, 1506
FokI GGATG 4 cut(s) 359, 426, 499, 1106
Fsp4HI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1341, 1344, 1506
FspBI CTAG 2 cut(s) 1211, 1274
GlaI GCGC 1 cut(s) 316
GluI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1341, 1344, 1506
GsuI CTGGAG 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 2 cut(s) 495, 1557
HapII CCGG 2 cut(s) 83, 254
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 4 cut(s) 469, 1008, 1244, 1265
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 2 cut(s) 210, 330
HindII GTYRAC 2 cut(s) 210, 330
HindIII AAGCTT 1 cut(s) 1535
HinfI GANTC 5 cut(s) 236, 248, 644, 769, 1265
HpaII CCGG 2 cut(s) 83, 254
HphI GGTGA 4 cut(s) 544, 900, 1060, 1582
Hpy166II GTNNAC 4 cut(s) 210, 330, 374, 552
Hpy188I TCNGA 7 cut(s) 45, 152, 402, 448, 1108, 1119, 1525
Hpy188III TCNNGA 3 cut(s) 648, 736, 1262
Hpy8I GTNNAC 4 cut(s) 210, 330, 374, 552
Hpy99I CGWCG 2 cut(s) 308, 1159
HpyAV CCTTC 6 cut(s) 783, 823, 1016, 1037, 1154, 1394
HpyCH4III ACNGT 5 cut(s) 214, 731, 825, 848, 912
HpyCH4IV ACGT 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 501, 787, 1598
HpyF3I CTNAG 4 cut(s) 76, 139, 401, 1336
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 4 cut(s) 469, 1008, 1244, 1265
HspAI GCGC 1 cut(s) 315
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 322, 1086
Lsp1109I GCAGC 9 cut(s) 337, 491, 564, 777, 780, 968, 1327, 1355, 1492
LweI GCATC 1 cut(s) 337
MaeI CTAG 2 cut(s) 1211, 1274
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 1010, 1196
MflI RGATCY 1 cut(s) 404
MlsI TGGCCA 1 cut(s) 495
MluCI AATT 7 cut(s) 160, 334, 453, 621, 941, 1320, 1387
MluNI TGGCCA 1 cut(s) 495
MlyI GAGTC 2 cut(s) 638, 1259
Mox20I TGGCCA 1 cut(s) 495
Mph1103I ATGCAT 1 cut(s) 563
MscI TGGCCA 1 cut(s) 495
MseI TTAA 4 cut(s) 933, 1202, 1596, 1645
MslI CAYNNNNRTG 2 cut(s) 910, 1003
Msp20I TGGCCA 1 cut(s) 495
MspA1I CMGCKG 2 cut(s) 1340, 1346
MspI CCGG 2 cut(s) 83, 254
MspR9I CCNGG 6 cut(s) 84, 255, 462, 517, 543, 669
MvaI CCWGG 4 cut(s) 462, 517, 543, 669
MvnI CGCG 1 cut(s) 1257
MwoI GCNNNNNNNGC 3 cut(s) 501, 787, 1598
NciI CCSGG 2 cut(s) 84, 255
NdeI CATATG 1 cut(s) 874
NlaIII CATG 4 cut(s) 469, 1008, 1244, 1265
NlaIV GGNNCC 3 cut(s) 130, 834, 880
NmuCI GTSAC 1 cut(s) 1196
NsiI ATGCAT 1 cut(s) 563
NspI RCATGY 1 cut(s) 1008
PagI TCATGA 1 cut(s) 1261
PaqCI CACCTGC 1 cut(s) 844
PciI ACATGT 1 cut(s) 1004
PciSI GCTCTTC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 1635
PfeI GAWTC 3 cut(s) 236, 248, 769
PkrI GCNGC 9 cut(s) 352, 506, 579, 792, 795, 983, 1342, 1345, 1507
PleI GAGTC 2 cut(s) 638, 1259
PpsI GAGTC 2 cut(s) 638, 1259
PpuMI RGGWCCY 1 cut(s) 129
PscI ACATGT 1 cut(s) 1004
PsiI TTATAA 2 cut(s) 1433, 1566
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 4 cut(s) 460, 515, 541, 667
PspGI CCWGG 4 cut(s) 460, 515, 541, 667
PspN4I GGNNCC 3 cut(s) 130, 834, 880
PspPI GGNCC 5 cut(s) 129, 869, 972, 1311, 1556
PspPPI RGGWCCY 1 cut(s) 129
PstI CTGCAG 2 cut(s) 582, 1345
PstNI CAGNNNCTG 1 cut(s) 981
PsuI RGATCY 1 cut(s) 404
PvuII CAGCTG 2 cut(s) 1340, 1346
RsaI GTAC 7 cut(s) 61, 81, 191, 274, 632, 1028, 1332
RsaNI GTAC 7 cut(s) 60, 80, 190, 273, 631, 1027, 1331
RseI CAYNNNNRTG 2 cut(s) 910, 1003
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 4 cut(s) 933, 1202, 1596, 1645
SatI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1341, 1344, 1506
Sau96I GGNCC 5 cut(s) 129, 869, 972, 1311, 1556
ScaI AGTACT 1 cut(s) 1332
SchI GAGTC 2 cut(s) 638, 1259
ScrFI CCNGG 6 cut(s) 84, 255, 462, 517, 543, 669
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 2 cut(s) 578, 1341
SinI GGWCC 4 cut(s) 129, 869, 972, 1311
SmiMI CAYNNNNRTG 2 cut(s) 910, 1003
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 7 cut(s) 160, 334, 453, 621, 941, 1320, 1387
SsiI CCGC 2 cut(s) 242, 867
SspMI CTAG 2 cut(s) 1211, 1274
StyD4I CCNGG 6 cut(s) 82, 253, 460, 515, 541, 667
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 5 cut(s) 214, 731, 825, 848, 912
TaiI ACGT 1 cut(s) 306
TaqI TCGA 7 cut(s) 306, 435, 702, 737, 1206, 1304, 1629
TasI AATT 7 cut(s) 160, 334, 453, 621, 941, 1320, 1387
TatI WGTACW 2 cut(s) 630, 1330
TfiI GAWTC 3 cut(s) 236, 248, 769
Tru1I TTAA 4 cut(s) 933, 1202, 1596, 1645
Tru9I TTAA 4 cut(s) 933, 1202, 1596, 1645
TscAI CASTG 4 cut(s) 103, 736, 753, 982
TseFI GTSAC 1 cut(s) 1196
TseI GCWGC 9 cut(s) 350, 504, 577, 790, 793, 981, 1340, 1343, 1505
Tsp45I GTSAC 1 cut(s) 1196
TspDTI ATGAA 6 cut(s) 42, 482, 909, 1240, 1250, 1283
TspGWI ACGGA 2 cut(s) 395, 1172
TspRI CASTG 4 cut(s) 103, 736, 753, 982
VpaK11BI GGWCC 4 cut(s) 129, 869, 972, 1311
XagI CCTNNNNNAGG 1 cut(s) 1306
XapI RAATTY 3 cut(s) 160, 941, 1387
XceI RCATGY 1 cut(s) 1008
XspI CTAG 2 cut(s) 1211, 1274
ZraI GACGTC 1 cut(s) 304
ZrmI AGTACT 1 cut(s) 1332
Zsp2I ATGCAT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.