Rh1CG075600

PAN-like domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
15772478 .. 15791092
18615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG075600.1

Sequence Viewer

Length: 801 bp
ATGGCGGCGATGACTTTGGGGTCGGAGAGGTGGGGCATCTGGCTGAGGAGGATGAGGATGGTTGCTGGGGCTACAAGAACACAGTTTCAAAATCCAGGTGGAACCGCGTTTTTCTTTTCATACAACTTTGATGTTGATGAGGTCTATCTTGTTTACAGTGTGTCGGATAGCTCAGTAAAATTGAGGGTCTGGTTGGATCCTACGGGGCAACTTAAACATCAGTTGTGGCAGAATTCTAGTAAAACGTGGTTGGAAGTAGTGAATCCATGGCCCGTTGATATCTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGTGAACCCCTGTCATCACCATGCAAGTGTTTGACTGGTTTTACAGCCAAGTTTCCGAACCAATCGGCGGTAGGGGATTGGTCCAGTGGCTGCATTAGGGAAAAGGTGTTGACATGTGGTAACGGCAAACAAGGTTACTTTTCAAAGCTTGAAAAGGTGAAACTGCCGGATCATTCTGTTCTGTTAGAGAATAGGAGTATGAGCGAGTGTGACTCTGAATGCCAGCAGAACTGTTCTTGTACAGCTTATGCTTATGTAAATGCGACAGATGGAAGTAATATTGGGACTTGTTTGGCATGGTTTAGCGAATTACTGGATCTAGTAGAGAATAAAACTACTGATGCATATGATATTTATATTCGTGTTCATGGCTCCGAACTAGGTCCACCTCAAGGCCATGAACTTGTAACTATTGTGATTAAACCGGTCTTGGAGTATGATTTGAGGATAACAAATGGTGATGGAAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

266

Amino Acids

29.74

Weight (kDa)

5.76

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 40 - 126 3.7e-17 S-locus glycoprotein domain
PAN_2 PF08276 151 - 216 4.7e-15 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
AccII CGCG 1 cut(s) 107
AciI CCGC 4 cut(s) 5, 105, 303, 395
AclWI GGATC 4 cut(s) 191, 204, 504, 651
AcsI RAATTY 1 cut(s) 232
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 2 cut(s) 394, 719
AflIII ACRYGT 1 cut(s) 440
AgeI ACCGGT 1 cut(s) 751
AgsI TTSAA 3 cut(s) 89, 471, 479
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 3 cut(s) 171, 475, 572
AluI AGCT 3 cut(s) 171, 475, 572
AlwI GGATC 4 cut(s) 191, 204, 504, 651
AlwNI CAGNNNCTG 1 cut(s) 417
AoxI GGCC 2 cut(s) 269, 721
ApeKI GCWGC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 232
AsiGI ACCGGT 1 cut(s) 751
AspS9I GGNCC 4 cut(s) 270, 305, 408, 710
AsuHPI GGTGA 4 cut(s) 336, 341, 496, 797
AvaII GGWCC 3 cut(s) 305, 408, 710
BamHI GGATCC 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 404
BccI CCATC 3 cut(s) 52, 590, 782
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 3 cut(s) 237, 647, 707
BisI GCNGC 2 cut(s) 6, 418
BlsI GCNGC 2 cut(s) 7, 419
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 3 cut(s) 305, 408, 710
BmgT120I GGNCC 4 cut(s) 270, 305, 408, 710
BmiI GGNNCC 4 cut(s) 103, 198, 307, 700
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 45, 658
BplI GAGNNNNNCTC 2 cut(s) 524, 556
Bpu10I CCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 751
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 719
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 3 cut(s) 367, 411, 645
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 57, 63
BseLI CCNNNNNNNGG 2 cut(s) 394, 719
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 35, 186
BseNI ACTGG 3 cut(s) 367, 411, 645
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 404
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 271, 723
BshTI ACCGGT 1 cut(s) 751
BsiSI CCGG 2 cut(s) 494, 752
BslFI GGGAC 2 cut(s) 291, 625
BslI CCNNNNNNNGG 2 cut(s) 394, 719
BsmFI GGGAC 2 cut(s) 291, 625
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 2 cut(s) 271, 723
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 3 cut(s) 196, 496, 643
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 4 cut(s) 5, 105, 303, 395
BspANI GGCC 2 cut(s) 271, 723
BspCNI CTCAG 2 cut(s) 36, 185
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 4 cut(s) 103, 198, 307, 700
BspPI GGATC 4 cut(s) 191, 204, 504, 651
BsrDI GCAATG 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 566
BsrI ACTGG 3 cut(s) 367, 411, 645
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 3 cut(s) 196, 496, 643
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 84, 158, 560
BstAUI TGTACA 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 551
BstDEI CTNAG 2 cut(s) 44, 172
BstDSI CCRYGG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 57, 63
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 3 cut(s) 199, 499, 646
BstMBI GATC 3 cut(s) 196, 496, 643
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 94
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 404
BstX2I RGATCY 2 cut(s) 196, 643
BstYI RGATCY 2 cut(s) 196, 643
BsuRI GGCC 2 cut(s) 271, 723
BtgI CCRYGG 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 2 cut(s) 57, 63
BtsIMutI CAGTG 2 cut(s) 163, 418
Cac8I GCNNGC 1 cut(s) 551
CaiI CAGNNNCTG 1 cut(s) 417
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 4 cut(s) 270, 305, 408, 710
Csp6I GTAC 1 cut(s) 567
CspAI ACCGGT 1 cut(s) 751
CviAII CATG 6 cut(s) 267, 348, 441, 624, 695, 725
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 2 cut(s) 44, 172
DpnI GATC 3 cut(s) 198, 498, 645
DpnII GATC 3 cut(s) 196, 496, 643
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 266
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 3 cut(s) 305, 408, 710
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 94
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 6 cut(s) 270, 351, 444, 627, 698, 728
FaqI GGGAC 2 cut(s) 291, 625
FatI CATG 6 cut(s) 266, 347, 440, 623, 694, 724
FauNDI CATATG 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 6, 418
FokI GGATG 2 cut(s) 64, 70
Fsp4HI GCNGC 2 cut(s) 6, 418
FspBI CTAG 3 cut(s) 237, 647, 707
GluI GCNGC 2 cut(s) 6, 418
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 271, 723
HapII CCGG 2 cut(s) 494, 752
Hin1II CATG 6 cut(s) 270, 351, 444, 627, 698, 728
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 2 cut(s) 262, 539
HpaII CCGG 2 cut(s) 494, 752
HphI GGTGA 4 cut(s) 336, 341, 496, 797
Hpy166II GTNNAC 4 cut(s) 154, 332, 438, 713
Hpy188I TCNGA 5 cut(s) 25, 166, 384, 544, 703
Hpy8I GTNNAC 4 cut(s) 154, 332, 438, 713
HpyCH4III ACNGT 3 cut(s) 84, 158, 560
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 351, 420, 671
HpyF3I CTNAG 2 cut(s) 44, 172
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 6 cut(s) 270, 351, 444, 627, 698, 728
Kzo9I GATC 3 cut(s) 196, 496, 643
LmnI GCTCC 1 cut(s) 704
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 2 cut(s) 45, 658
MaeI CTAG 3 cut(s) 237, 647, 707
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 4 cut(s) 446, 461, 536, 733
MalI GATC 3 cut(s) 198, 498, 645
MboI GATC 3 cut(s) 196, 496, 643
MflI RGATCY 2 cut(s) 196, 643
MluCI AATT 3 cut(s) 179, 232, 635
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 3 cut(s) 144, 174, 231
MnlI CCTC 9 cut(s) 21, 39, 42, 48, 133, 177, 320, 726, 765
Mph1103I ATGCAT 1 cut(s) 673
MseI TTAA 2 cut(s) 213, 747
MslI CAYNNNNRTG 2 cut(s) 346, 352
MspI CCGG 2 cut(s) 494, 752
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 107
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 1 cut(s) 673
NdeII GATC 3 cut(s) 196, 496, 643
NlaIII CATG 6 cut(s) 270, 351, 444, 627, 698, 728
NlaIV GGNNCC 4 cut(s) 103, 198, 307, 700
NmuCI GTSAC 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 673
NspI RCATGY 1 cut(s) 444
PciI ACATGT 1 cut(s) 440
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 262
PinAI ACCGGT 1 cut(s) 751
PkrI GCNGC 2 cut(s) 7, 419
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PscI ACATGT 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 4 cut(s) 103, 198, 307, 700
PspPI GGNCC 4 cut(s) 270, 305, 408, 710
PstNI CAGNNNCTG 1 cut(s) 417
PsuI RGATCY 2 cut(s) 196, 643
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 2 cut(s) 346, 352
SaqAI TTAA 2 cut(s) 213, 747
SatI GCNGC 2 cut(s) 6, 418
Sau3AI GATC 3 cut(s) 196, 496, 643
Sau96I GGNCC 4 cut(s) 270, 305, 408, 710
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 96
SfaNI GCATC 2 cut(s) 45, 658
SinI GGWCC 3 cut(s) 305, 408, 710
SmiMI CAYNNNNRTG 2 cut(s) 346, 352
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 3 cut(s) 179, 232, 635
SsiI CCGC 4 cut(s) 5, 105, 303, 395
SspI AATATT 1 cut(s) 607
SspMI CTAG 3 cut(s) 237, 647, 707
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 3 cut(s) 84, 158, 560
TaiI ACGT 1 cut(s) 248
TasI AATT 3 cut(s) 179, 232, 635
TatI WGTACW 1 cut(s) 566
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 213, 747
Tru9I TTAA 2 cut(s) 213, 747
TscAI CASTG 2 cut(s) 163, 418
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 1 cut(s) 417
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 3 cut(s) 108, 683, 741
TspRI CASTG 2 cut(s) 163, 418
VpaK11BI GGWCC 3 cut(s) 305, 408, 710
XapI RAATTY 1 cut(s) 232
XceI RCATGY 1 cut(s) 444
XspI CTAG 3 cut(s) 237, 647, 707
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.