divergent subfamily of APPLE domains
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 396 |
| AccII | CGCG | 1 cut(s) | 65 |
| AciI | CCGC | 2 cut(s) | 184, 942 |
| AcoI | YGGCCR | 1 cut(s) | 426 |
| AcsI | RAATTY | 5 cut(s) | 402, 599, 795, 976, 1225 |
| AcuI | CTGAAG | 2 cut(s) | 298, 375 |
| AfaI | GTAC | 3 cut(s) | 43, 681, 698 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 183, 435 |
| AflIII | ACRYGT | 2 cut(s) | 576, 1217 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 251, 283 |
| AluBI | AGCT | 9 cut(s) | 47, 215, 239, 367, 969, 1079, 1121, 1178, 1208 |
| AluI | AGCT | 9 cut(s) | 47, 215, 239, 367, 969, 1079, 1121, 1178, 1208 |
| Alw21I | GWGCWC | 1 cut(s) | 115 |
| Alw26I | GTCTC | 2 cut(s) | 211, 864 |
| Alw44I | GTGCAC | 1 cut(s) | 111 |
| Ama87I | CYCGRG | 1 cut(s) | 1163 |
| AoxI | GGCC | 2 cut(s) | 385, 426 |
| ApaLI | GTGCAC | 1 cut(s) | 111 |
| ApeKI | GCWGC | 2 cut(s) | 212, 215 |
| ApoI | RAATTY | 5 cut(s) | 402, 599, 795, 976, 1225 |
| AspS9I | GGNCC | 2 cut(s) | 186, 386 |
| AsuHPI | GGTGA | 1 cut(s) | 1255 |
| AsuII | TTCGAA | 1 cut(s) | 652 |
| AvaI | CYCGRG | 1 cut(s) | 1163 |
| AvaII | GGWCC | 1 cut(s) | 186 |
| BaeGI | GKGCMC | 1 cut(s) | 115 |
| BalI | TGGCCA | 1 cut(s) | 428 |
| Bbv12I | GWGCWC | 1 cut(s) | 115 |
| BbvI | GCAGC | 2 cut(s) | 202, 224 |
| BccI | CCATC | 1 cut(s) | 65 |
| BceAI | ACGGC | 1 cut(s) | 865 |
| BciVI | GTATCC | 2 cut(s) | 634, 1100 |
| BcoDI | GTCTC | 2 cut(s) | 211, 864 |
| BfaI | CTAG | 1 cut(s) | 702 |
| BfmI | CTRYAG | 2 cut(s) | 210, 216 |
| BfuI | GTATCC | 2 cut(s) | 634, 1100 |
| BglII | AGATCT | 1 cut(s) | 724 |
| BisI | GCNGC | 2 cut(s) | 213, 216 |
| BlsI | GCNGC | 2 cut(s) | 214, 217 |
| BmcAI | AGTACT | 2 cut(s) | 681, 698 |
| Bme18I | GGWCC | 1 cut(s) | 186 |
| BmeT110I | CYCGRG | 1 cut(s) | 1163 |
| BmgT120I | GGNCC | 2 cut(s) | 186, 386 |
| BmiI | GGNNCC | 2 cut(s) | 142, 188 |
| BmsI | GCATC | 3 cut(s) | 321, 601, 1055 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 31 |
| BpmI | CTGGAG | 2 cut(s) | 488, 1107 |
| Bpu14I | TTCGAA | 1 cut(s) | 652 |
| BpuEI | CTTGAG | 1 cut(s) | 657 |
| BsaBI | GATNNNNATC | 1 cut(s) | 563 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1020, 1050 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 183, 435 |
| Bse1I | ACTGG | 1 cut(s) | 1124 |
| Bse3DI | GCAATG | 1 cut(s) | 745 |
| Bse8I | GATNNNNATC | 1 cut(s) | 563 |
| BseGI | GGATG | 2 cut(s) | 907, 1145 |
| BseJI | GATNNNNATC | 1 cut(s) | 563 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 183, 435 |
| BseMI | GCAATG | 1 cut(s) | 745 |
| BseNI | ACTGG | 1 cut(s) | 1124 |
| BseRI | GAGGAG | 1 cut(s) | 1041 |
| BseSI | GKGCMC | 1 cut(s) | 115 |
| BseXI | GCAGC | 2 cut(s) | 202, 224 |
| Bsh1236I | CGCG | 1 cut(s) | 65 |
| BshFI | GGCC | 2 cut(s) | 387, 428 |
| BsiHKAI | GWGCWC | 1 cut(s) | 115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1163 |
| BsiSI | CCGG | 1 cut(s) | 1066 |
| BslFI | GGGAC | 1 cut(s) | 100 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 183, 435 |
| BsmAI | GTCTC | 2 cut(s) | 211, 864 |
| BsmFI | GGGAC | 1 cut(s) | 100 |
| BsmI | GAATGC | 2 cut(s) | 26, 958 |
| BsnI | GGCC | 2 cut(s) | 387, 428 |
| BsoBI | CYCGRG | 1 cut(s) | 1163 |
| Bsp119I | TTCGAA | 1 cut(s) | 652 |
| Bsp1286I | GDGCHC | 1 cut(s) | 115 |
| Bsp1407I | TGTACA | 1 cut(s) | 41 |
| Bsp143I | GATC | 3 cut(s) | 564, 724, 1129 |
| BspACI | CCGC | 2 cut(s) | 184, 942 |
| BspANI | GGCC | 2 cut(s) | 387, 428 |
| BspFNI | CGCG | 1 cut(s) | 65 |
| BspHI | TCATGA | 2 cut(s) | 466, 1072 |
| BspLI | GGNNCC | 2 cut(s) | 142, 188 |
| BspMAI | CTGCAG | 2 cut(s) | 214, 220 |
| BspT104I | TTCGAA | 1 cut(s) | 652 |
| BsrDI | GCAATG | 1 cut(s) | 745 |
| BsrGI | TGTACA | 1 cut(s) | 41 |
| BsrI | ACTGG | 1 cut(s) | 1124 |
| BssMI | GATC | 3 cut(s) | 564, 724, 1129 |
| Bst4CI | ACNGT | 1 cut(s) | 35 |
| Bst6I | CTCTTC | 1 cut(s) | 317 |
| BstAUI | TGTACA | 1 cut(s) | 41 |
| BstBI | TTCGAA | 1 cut(s) | 652 |
| BstC8I | GCNNGC | 4 cut(s) | 26, 336, 736, 990 |
| BstF5I | GGATG | 2 cut(s) | 907, 1145 |
| BstFNI | CGCG | 1 cut(s) | 65 |
| BstKTI | GATC | 3 cut(s) | 567, 727, 1132 |
| BstMAI | GTCTC | 2 cut(s) | 211, 864 |
| BstMBI | GATC | 3 cut(s) | 564, 724, 1129 |
| BstNSI | RCATGY | 3 cut(s) | 580, 1065, 1221 |
| BstSFI | CTRYAG | 2 cut(s) | 210, 216 |
| BstSLI | GKGCMC | 1 cut(s) | 115 |
| BstUI | CGCG | 1 cut(s) | 65 |
| BstV1I | GCAGC | 2 cut(s) | 202, 224 |
| BstX2I | RGATCY | 1 cut(s) | 724 |
| BstYI | RGATCY | 1 cut(s) | 724 |
| BsuI | GTATCC | 2 cut(s) | 634, 1100 |
| BsuRI | GGCC | 2 cut(s) | 387, 428 |
| BtsCI | GGATG | 2 cut(s) | 907, 1145 |
| Cac8I | GCNNGC | 4 cut(s) | 26, 336, 736, 990 |
| CciI | TCATGA | 2 cut(s) | 466, 1072 |
| Cfr13I | GGNCC | 2 cut(s) | 186, 386 |
| CseI | GACGC | 1 cut(s) | 1052 |
| Csp6I | GTAC | 3 cut(s) | 42, 680, 697 |
| CviAII | CATG | 8 cut(s) | 116, 137, 467, 577, 1062, 1073, 1094, 1218 |
| CviQI | GTAC | 3 cut(s) | 42, 680, 697 |
| DpnI | GATC | 3 cut(s) | 566, 726, 1131 |
| DpnII | GATC | 3 cut(s) | 564, 724, 1129 |
| EaeI | YGGCCR | 1 cut(s) | 426 |
| Eam1104I | CTCTTC | 1 cut(s) | 317 |
| EarI | CTCTTC | 1 cut(s) | 317 |
| Eco47I | GGWCC | 1 cut(s) | 186 |
| Eco57I | CTGAAG | 2 cut(s) | 298, 375 |
| Eco88I | CYCGRG | 1 cut(s) | 1163 |
| FaeI | CATG | 8 cut(s) | 119, 140, 470, 580, 1065, 1076, 1097, 1221 |
| FaqI | GGGAC | 1 cut(s) | 100 |
| FatI | CATG | 8 cut(s) | 115, 136, 466, 576, 1061, 1072, 1093, 1217 |
| FauNDI | CATATG | 1 cut(s) | 1158 |
| Fnu4HI | GCNGC | 2 cut(s) | 213, 216 |
| FokI | GGATG | 2 cut(s) | 914, 1132 |
| Fsp4HI | GCNGC | 2 cut(s) | 213, 216 |
| FspBI | CTAG | 1 cut(s) | 702 |
| GluI | GCNGC | 2 cut(s) | 213, 216 |
| GsuI | CTGGAG | 2 cut(s) | 488, 1107 |
| HaeIII | GGCC | 2 cut(s) | 387, 428 |
| HapII | CCGG | 1 cut(s) | 1066 |
| HgaI | GACGC | 1 cut(s) | 1052 |
| Hin1II | CATG | 8 cut(s) | 119, 140, 470, 580, 1065, 1076, 1097, 1221 |
| HincII | GTYRAC | 1 cut(s) | 1171 |
| HindII | GTYRAC | 1 cut(s) | 1171 |
| HindIII | AAGCTT | 2 cut(s) | 365, 1077 |
| HinfI | GANTC | 2 cut(s) | 14, 1069 |
| HpaII | CCGG | 1 cut(s) | 1066 |
| HphI | GGTGA | 1 cut(s) | 1255 |
| Hpy166II | GTNNAC | 3 cut(s) | 61, 113, 1171 |
| Hpy188I | TCNGA | 7 cut(s) | 19, 145, 355, 778, 892, 917, 1252 |
| Hpy188III | TCNNGA | 7 cut(s) | 419, 467, 475, 702, 863, 1073, 1115 |
| Hpy8I | GTNNAC | 3 cut(s) | 61, 113, 1171 |
| HpyAV | CCTTC | 1 cut(s) | 539 |
| HpyCH4III | ACNGT | 1 cut(s) | 35 |
| HpyCH4V | TGCA | 5 cut(s) | 113, 200, 212, 218, 872 |
| Hsp92II | CATG | 8 cut(s) | 119, 140, 470, 580, 1065, 1076, 1097, 1221 |
| Kzo9I | GATC | 3 cut(s) | 564, 724, 1129 |
| LmnI | GCTCC | 2 cut(s) | 146, 1126 |
| Lsp1109I | GCAGC | 2 cut(s) | 202, 224 |
| LweI | GCATC | 3 cut(s) | 321, 601, 1055 |
| MaeI | CTAG | 1 cut(s) | 702 |
| MaeIII | GTNAC | 2 cut(s) | 11, 1237 |
| MalI | GATC | 3 cut(s) | 566, 726, 1131 |
| MboI | GATC | 3 cut(s) | 564, 724, 1129 |
| MboII | GAAGA | 5 cut(s) | 271, 301, 304, 961, 1031 |
| MflI | RGATCY | 1 cut(s) | 724 |
| MhlI | GDGCHC | 1 cut(s) | 115 |
| MlsI | TGGCCA | 1 cut(s) | 428 |
| MluNI | TGGCCA | 1 cut(s) | 428 |
| MlyI | GAGTC | 1 cut(s) | 8 |
| MmeI | TCCRAC | 2 cut(s) | 202, 820 |
| MnlI | CCTC | 8 cut(s) | 275, 367, 429, 1019, 1027, 1077, 1159, 1204 |
| Mox20I | TGGCCA | 1 cut(s) | 428 |
| MscI | TGGCCA | 1 cut(s) | 428 |
| MseI | TTAA | 2 cut(s) | 171, 320 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1157 |
| Msp20I | TGGCCA | 1 cut(s) | 428 |
| MspA1I | CMGCKG | 1 cut(s) | 215 |
| MspI | CCGG | 1 cut(s) | 1066 |
| Mva1269I | GAATGC | 2 cut(s) | 26, 958 |
| MvnI | CGCG | 1 cut(s) | 65 |
| NdeI | CATATG | 1 cut(s) | 1158 |
| NdeII | GATC | 3 cut(s) | 564, 724, 1129 |
| NlaIII | CATG | 8 cut(s) | 119, 140, 470, 580, 1065, 1076, 1097, 1221 |
| NlaIV | GGNNCC | 2 cut(s) | 142, 188 |
| NmuCI | GTSAC | 1 cut(s) | 11 |
| NspI | RCATGY | 3 cut(s) | 580, 1065, 1221 |
| NspV | TTCGAA | 1 cut(s) | 652 |
| PaeR7I | CTCGAG | 1 cut(s) | 1163 |
| PagI | TCATGA | 2 cut(s) | 466, 1072 |
| PciI | ACATGT | 2 cut(s) | 576, 1217 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1170 |
| PctI | GAATGC | 2 cut(s) | 26, 958 |
| PfeI | GAWTC | 1 cut(s) | 1069 |
| PkrI | GCNGC | 2 cut(s) | 214, 217 |
| PleI | GAGTC | 1 cut(s) | 8 |
| PpsI | GAGTC | 1 cut(s) | 8 |
| PscI | ACATGT | 2 cut(s) | 576, 1217 |
| PsiI | TTATAA | 1 cut(s) | 396 |
| PspN4I | GGNNCC | 2 cut(s) | 142, 188 |
| PspPI | GGNCC | 2 cut(s) | 186, 386 |
| PspXI | VCTCGAGB | 1 cut(s) | 1163 |
| PstI | CTGCAG | 2 cut(s) | 214, 220 |
| PsuI | RGATCY | 1 cut(s) | 724 |
| PvuII | CAGCTG | 1 cut(s) | 215 |
| RsaI | GTAC | 3 cut(s) | 43, 681, 698 |
| RsaNI | GTAC | 3 cut(s) | 42, 680, 697 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1157 |
| SaqAI | TTAA | 2 cut(s) | 171, 320 |
| SatI | GCNGC | 2 cut(s) | 213, 216 |
| Sau3AI | GATC | 3 cut(s) | 564, 724, 1129 |
| Sau96I | GGNCC | 2 cut(s) | 186, 386 |
| ScaI | AGTACT | 2 cut(s) | 681, 698 |
| SchI | GAGTC | 1 cut(s) | 8 |
| SduI | GDGCHC | 1 cut(s) | 115 |
| SfaNI | GCATC | 3 cut(s) | 321, 601, 1055 |
| SfcI | CTRYAG | 2 cut(s) | 210, 216 |
| Sfr274I | CTCGAG | 1 cut(s) | 1163 |
| SfuI | TTCGAA | 1 cut(s) | 652 |
| SinI | GGWCC | 1 cut(s) | 186 |
| SlaI | CTCGAG | 1 cut(s) | 1163 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1157 |
| SmlI | CTYRAG | 2 cut(s) | 672, 1163 |
| SmoI | CTYRAG | 2 cut(s) | 672, 1163 |
| SsiI | CCGC | 2 cut(s) | 184, 942 |
| SspI | AATATT | 1 cut(s) | 82 |
| SspMI | CTAG | 1 cut(s) | 702 |
| TaaI | ACNGT | 1 cut(s) | 35 |
| TaqI | TCGA | 5 cut(s) | 586, 652, 1132, 1164, 1285 |
| TatI | WGTACW | 3 cut(s) | 41, 679, 696 |
| TfiI | GAWTC | 1 cut(s) | 1069 |
| Tru1I | TTAA | 2 cut(s) | 171, 320 |
| Tru9I | TTAA | 2 cut(s) | 171, 320 |
| TseFI | GTSAC | 1 cut(s) | 11 |
| TseI | GCWGC | 2 cut(s) | 212, 215 |
| Tsp45I | GTSAC | 1 cut(s) | 11 |
| TspDTI | ATGAA | 7 cut(s) | 125, 567, 585, 776, 1061, 1089, 1145 |
| TspGWI | ACGGA | 3 cut(s) | 157, 768, 1138 |
| VneI | GTGCAC | 1 cut(s) | 111 |
| VpaK11BI | GGWCC | 1 cut(s) | 186 |
| XapI | RAATTY | 5 cut(s) | 402, 599, 795, 976, 1225 |
| XbaI | TCTAGA | 1 cut(s) | 701 |
| XceI | RCATGY | 3 cut(s) | 580, 1065, 1221 |
| XhoI | CTCGAG | 1 cut(s) | 1163 |
| XspI | CTAG | 1 cut(s) | 702 |
| ZrmI | AGTACT | 2 cut(s) | 681, 698 |