FvH4_6g44140

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000114
Physical Location & Seq
Reverse (-)
34044315 .. 34047238
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44140.t1

Sequence Viewer

Length: 1977 bp
ATGAATCATACAACTGGATTACTAGCGGATACCGGAAACCTTGTTCTTAGCTTTGGAGAAGGCACCTTGTGGCAGAGCTTCGATTACCCCTCTGATACTATGTTGCCCGGCATGAAGATTACCTTGAATAAAACGACTGGCCAACAAAGGCGCCTTACATCTTGGGCAGCGCTTTATGATCCACACCCCGGAAAGTTCACCTTCGGCATTGATCCTAAAGTACCACTTCAGCTCTTTATCTGGAAGGAAACTTCTCCGTATTATAGAAGTTCTGTGTTCGTTGGCAATTTTCCTGATATAGGTGGATCGCCATTTTTCGTTTCTTACAACTTGGATATTGATGAGGCTTATGTTGTTTACAGTGTCTCAGATAGCTCAGTAAAACTGAGGGTCTGGTTGAGTCCTGCAGGGCAATTTAAACAGCTGCTGTGGCAGGATTCTAGTAAAACGTGGTTGGAAATGGGGAGTTCACCTGGTGATAACTGTGATTTTTATGCTTATTGCGGTCCCAATAGCGCCTGTCGTAGAGGTGATTCCCTGTCGTCATCACCATGCAAGTGTTTGACTGGTTTTAAAGCCAAGTTTCCGAAACAATCGGCGGTGGGAGATTGGTCCGGTGGCTGCGTTAGAGAAAAGGCGTTGACATGTGGTAACGGCATTCAAGGCAACCTTTCAAAGCTTGAAAACGTGAAACTGCCGGATCATTCTGTTTTATTACAGAATAAGACTCTGAGTGAGTGTGTCTCTGAATGTCGGAAGAACTGTTCTTGCAGGGCTTATGCCTATGTAAATGGGACAGATGGAAGCAAAAATGGTCATTCTGCTAATTCCTTGAACCGGACCCTTGTGATTGCAGTAGTCTCTGCAGCAGTTGGATTGCTTGCAATAACTTTTGGCTATTTCTTATGGAAGAACAAATTGGGGAGGATAGCAATAAGAGCGAGTGAGAATATAAGTAAGGTTGGTGCAGCAGGTGGGAAGAATGATACAGAACTACCACTCTTCAGTTTAAGGAGTATATTAGCTGCTACAAACAACTTTTCTGAAGATAATAAACTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGAATTATGCTGGAAAATCAAGAAGTGGCCGTAAAGAGGCTATCAAAGAAGTCTGGGCAAGGGCATCATGAGTTCATGAATGAGTTGAAACTTATAGCCAAACTCCAGCATACCAATCTTGCTCGTCTCTTGGGATGCTGTATGGATGAAGATGAACTCATATTGGTCTATGAATACATGCCTAATCGAAGTTTGGACAAATATTTGTTTGATCCCTTTGAAAAGACAAAATTGGACTGGGATACTCGCTTTCGAATTATACAAGGCATTGCTCAAGGAGTACTATATATCCACAAATACTCTAGATTGAAAATCATCCACAGAGATCTAAAAGCAAGTAATGTTCTGTTGGATGGAGCAATGAATCCCAAAGTGTCTGACTTTGGAATGGCGAGGATTTTTGATACAAATCAAATTGAAGCAAACACCAACAAGGTTGTTGGAACATACGGCTACATGTCACCTGAATATGCACTATATGGTCATTTTTCTGAGAAATTGGATGTATTTAGTTTCAGAGTATTGTTGTTAGAGATTGTGAGTGGAAAGAAGAATGTTTTGTTTTATTATTGTGAAAATTCAGTAACGCTTGCTCATTGGATATGGGAATTATGGAAAGAAGGTAGAGGAATGGAGGTAATTGACACATCAGTGAGGGAAACATGCCGGATTCATGAAGCTTTGAGGTGCATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGTTGATCGACCAACAATGTCATTAGTGATTCATATGCTGGAGGCTGAAGAAGCTACATCACTCCCGCCCTCCAAAGAACCTGCTTTCTCGACAAGTAGGATTTCAAGTCCTGTTACCACTTATTCCAAAAATGTAGTAACTATTACTTTGCCGGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

659

Amino Acids

73.26

Weight (kDa)

8.17

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 2 - 55 4.9e-16 D-mannose binding lectin
S_locus_glycop PF00954 111 - 194 1.5e-17 S-locus glycoprotein domain
PAN_2 PF08276 224 - 269 3.2e-10 PAN-like domain
Pkinase PF00069 348 - 547 4.6e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 350 - 616 6.6e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1086
AarI CACCTGC 1 cut(s) 962
Acc36I ACCTGC 2 cut(s) 962, 1903
AccB1I GGYRCC 2 cut(s) 62, 150
AciI CCGC 4 cut(s) 26, 504, 599, 1880
AclWI GGATC 5 cut(s) 173, 206, 313, 708, 1295
AcoI YGGCCR 2 cut(s) 139, 1116
AcsI RAATTY 1 cut(s) 1666
AcuI CTGAAG 4 cut(s) 212, 988, 1065, 1881
AcyI GRCGYC 1 cut(s) 151
AdeI CACNNNGTG 2 cut(s) 69, 476
AfaI GTAC 2 cut(s) 222, 1371
AfeI AGCGCT 1 cut(s) 171
AfiI CCNNNNNNNGG 4 cut(s) 188, 299, 837, 1125
AflIII ACRYGT 2 cut(s) 644, 1545
AjnI CCWGG 1 cut(s) 472
AjuI GAANNNNNNNTTGG 2 cut(s) 902, 934
AleI CACNNNNGTG 1 cut(s) 1739
AloI GAACNNNNNNTCC 4 cut(s) 27, 59, 748, 780
Alw26I GTCTC 4 cut(s) 370, 748, 865, 1220
AlwI GGATC 5 cut(s) 173, 206, 313, 708, 1295
AlwNI CAGNNNCTG 1 cut(s) 427
Aor51HI AGCGCT 1 cut(s) 171
AoxI GGCC 3 cut(s) 139, 1075, 1116
ApeKI GCWGC 6 cut(s) 167, 424, 621, 866, 968, 1025
ApoI RAATTY 1 cut(s) 1666
AspLEI GCGC 3 cut(s) 153, 172, 518
AspS9I GGNCC 4 cut(s) 506, 612, 840, 1076
AsuC2I CCSGG 2 cut(s) 108, 189
AsuHPI GGTGA 6 cut(s) 190, 462, 488, 540, 542, 1542
AsuII TTCGAA 1 cut(s) 1342
AvaII GGWCC 3 cut(s) 506, 612, 840
BalI TGGCCA 1 cut(s) 141
BanI GGYRCC 2 cut(s) 62, 150
BbvI GCAGC 6 cut(s) 179, 411, 608, 878, 980, 1012
BccI CCATC 2 cut(s) 794, 1436
BceAI ACGGC 3 cut(s) 670, 1103, 1555
BcgI CGANNNNNNTGC 2 cut(s) 1768, 1802
BciT130I CCWGG 1 cut(s) 474
BciVI GTATCC 2 cut(s) 22, 1324
BcnI CCSGG 2 cut(s) 108, 189
BcoDI GTCTC 4 cut(s) 370, 748, 865, 1220
BfaI CTAG 3 cut(s) 23, 441, 1392
BfmI CTRYAG 2 cut(s) 405, 864
BfoI RGCGCY 3 cut(s) 154, 173, 519
BfuAI ACCTGC 2 cut(s) 962, 1903
BfuI GTATCC 2 cut(s) 22, 1324
BglII AGATCT 1 cut(s) 1414
BisI GCNGC 6 cut(s) 168, 425, 622, 867, 969, 1026
BlsI GCNGC 6 cut(s) 169, 426, 623, 868, 970, 1027
BmcAI AGTACT 1 cut(s) 1371
Bme1390I CCNGG 3 cut(s) 108, 189, 474
Bme18I GGWCC 3 cut(s) 506, 612, 840
BmgT120I GGNCC 4 cut(s) 506, 612, 840, 1076
BmiI GGNNCC 5 cut(s) 64, 152, 508, 842, 1971
BmrFI CCNGG 3 cut(s) 108, 189, 474
BmrI ACTGGG 1 cut(s) 1336
BmsI GCATC 3 cut(s) 1162, 1214, 1788
BmuI ACTGGG 1 cut(s) 1336
BplI GAGNNNNNCTC 2 cut(s) 728, 760
BpmI CTGGAG 3 cut(s) 1178, 1797, 1874
Bpu14I TTCGAA 1 cut(s) 1342
BpuEI CTTGAG 1 cut(s) 1347
BpuMI CCSGG 2 cut(s) 108, 189
BsaBI GATNNNNATC 1 cut(s) 1497
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 3 cut(s) 32, 614, 837
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 299, 837, 1125
Bse1I ACTGG 5 cut(s) 19, 142, 571, 1331, 1814
Bse3DI GCAATG 2 cut(s) 1356, 1455
Bse8I GATNNNNATC 1 cut(s) 1497
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 6 cut(s) 1229, 1240, 1404, 1447, 1597, 1779
BseJI GATNNNNATC 1 cut(s) 1497
BseLI CCNNNNNNNGG 4 cut(s) 188, 299, 837, 1125
BseMI GCAATG 2 cut(s) 1356, 1455
BseMII CTCAG 5 cut(s) 377, 381, 390, 722, 1572
BseNI ACTGG 5 cut(s) 19, 142, 571, 1331, 1814
BseXI GCAGC 6 cut(s) 179, 411, 608, 878, 980, 1012
BsgI GTGCAG 1 cut(s) 987
BshFI GGCC 3 cut(s) 141, 1077, 1118
BshNI GGYRCC 2 cut(s) 62, 150
BsiSI CCGG 8 cut(s) 33, 108, 189, 615, 698, 838, 1756, 1967
BslFI GGGAC 2 cut(s) 492, 808
BslI CCNNNNNNNGG 4 cut(s) 188, 299, 837, 1125
BsmAI GTCTC 4 cut(s) 370, 748, 865, 1220
BsmBI CGTCTC 1 cut(s) 1220
BsmFI GGGAC 2 cut(s) 492, 808
BsmI GAATGC 1 cut(s) 657
BsnI GGCC 3 cut(s) 141, 1077, 1118
Bsp119I TTCGAA 1 cut(s) 1342
Bsp143I GATC 7 cut(s) 178, 211, 305, 700, 1300, 1414, 1819
BspACI CCGC 4 cut(s) 26, 504, 599, 1880
BspANI GGCC 3 cut(s) 141, 1077, 1118
BspCNI CTCAG 5 cut(s) 378, 380, 389, 723, 1573
BspHI TCATGA 3 cut(s) 1156, 1164, 1762
BspLI GGNNCC 5 cut(s) 64, 152, 508, 842, 1971
BspMAI CTGCAG 2 cut(s) 409, 868
BspMI ACCTGC 2 cut(s) 962, 1903
BspPI GGATC 5 cut(s) 173, 206, 313, 708, 1295
BspT104I TTCGAA 1 cut(s) 1342
BspT107I GGYRCC 2 cut(s) 62, 150
BsrDI GCAATG 2 cut(s) 1356, 1455
BsrI ACTGG 5 cut(s) 19, 142, 571, 1331, 1814
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 7 cut(s) 178, 211, 305, 700, 1300, 1414, 1819
BssNI GRCGYC 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 362, 485, 764
Bst6I CTCTTC 1 cut(s) 1007
BstACI GRCGYC 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 1342
BstC8I GCNNGC 2 cut(s) 882, 1680
BstDEI CTNAG 6 cut(s) 47, 367, 376, 386, 731, 1581
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 6 cut(s) 1229, 1240, 1404, 1447, 1597, 1779
BstH2I RGCGCY 3 cut(s) 154, 173, 519
BstHHI GCGC 3 cut(s) 153, 172, 518
BstKTI GATC 7 cut(s) 181, 214, 308, 703, 1303, 1417, 1822
BstMAI GTCTC 4 cut(s) 370, 748, 865, 1220
BstMBI GATC 7 cut(s) 178, 211, 305, 700, 1300, 1414, 1819
BstMWI GCNNNNNNNGC 4 cut(s) 430, 663, 938, 1865
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 4 cut(s) 648, 1270, 1549, 1755
BstSCI CCNGG 3 cut(s) 106, 187, 472
BstSFI CTRYAG 2 cut(s) 405, 864
BstV1I GCAGC 6 cut(s) 179, 411, 608, 878, 980, 1012
BstX2I RGATCY 1 cut(s) 1414
BstYI RGATCY 1 cut(s) 1414
BsuI GTATCC 2 cut(s) 22, 1324
BsuRI GGCC 3 cut(s) 141, 1077, 1118
BtsCI GGATG 6 cut(s) 1229, 1240, 1404, 1447, 1597, 1779
BtsIMutI CAGTG 2 cut(s) 367, 1746
BveI ACCTGC 2 cut(s) 962, 1903
Cac8I GCNNGC 2 cut(s) 882, 1680
CaiI CAGNNNCTG 1 cut(s) 427
CciI TCATGA 3 cut(s) 1156, 1164, 1762
CfoI GCGC 3 cut(s) 153, 172, 518
Cfr13I GGNCC 4 cut(s) 506, 612, 840, 1076
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 2 cut(s) 221, 1370
CviQI GTAC 2 cut(s) 221, 1370
DdeI CTNAG 6 cut(s) 47, 367, 376, 386, 731, 1581
DinI GGCGCC 1 cut(s) 152
DpnI GATC 7 cut(s) 180, 213, 307, 702, 1302, 1416, 1821
DpnII GATC 7 cut(s) 178, 211, 305, 700, 1300, 1414, 1819
DraI TTTAAA 2 cut(s) 418, 574
DraIII CACNNNGTG 2 cut(s) 69, 476
EaeI YGGCCR 2 cut(s) 139, 1116
Eam1104I CTCTTC 1 cut(s) 1007
EarI CTCTTC 1 cut(s) 1007
Eco47I GGWCC 3 cut(s) 506, 612, 840
Eco47III AGCGCT 1 cut(s) 171
Eco57I CTGAAG 4 cut(s) 212, 988, 1065, 1881
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 472
EgeI GGCGCC 1 cut(s) 152
EheI GGCGCC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 1220
FalI AAGNNNNNCTT 8 cut(s) 107, 139, 185, 217, 210, 242, 654, 686
FaqI GGGAC 2 cut(s) 492, 808
FauI CCCGC 1 cut(s) 1887
FauNDI CATATG 1 cut(s) 1848
Fnu4HI GCNGC 6 cut(s) 168, 425, 622, 867, 969, 1026
FokI GGATG 6 cut(s) 1236, 1247, 1391, 1454, 1604, 1766
Fsp4HI GCNGC 6 cut(s) 168, 425, 622, 867, 969, 1026
FspBI CTAG 3 cut(s) 23, 441, 1392
GlaI GCGC 3 cut(s) 152, 171, 517
GluI GCNGC 6 cut(s) 168, 425, 622, 867, 969, 1026
GsuI CTGGAG 3 cut(s) 1178, 1797, 1874
HaeII RGCGCY 3 cut(s) 154, 173, 519
HaeIII GGCC 3 cut(s) 141, 1077, 1118
HapII CCGG 8 cut(s) 33, 108, 189, 615, 698, 838, 1756, 1967
HhaI GCGC 3 cut(s) 153, 172, 518
Hin1I GRCGYC 1 cut(s) 151
Hin6I GCGC 3 cut(s) 151, 170, 516
HinP1I GCGC 3 cut(s) 151, 170, 516
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 2 cut(s) 677, 1767
HinfI GANTC 8 cut(s) 4, 400, 437, 533, 727, 1453, 1759, 1843
HpaII CCGG 8 cut(s) 33, 108, 189, 615, 698, 838, 1756, 1967
HphI GGTGA 6 cut(s) 190, 462, 488, 540, 542, 1542
Hpy166II GTNNAC 4 cut(s) 198, 358, 470, 642
Hpy188III TCNNGA 9 cut(s) 241, 293, 1109, 1157, 1165, 1392, 1763, 1805, 1903
Hpy8I GTNNAC 4 cut(s) 198, 358, 470, 642
HpyAV CCTTC 4 cut(s) 53, 211, 238, 1703
HpyCH4III ACNGT 3 cut(s) 362, 485, 764
HpyCH4IV ACGT 2 cut(s) 449, 687
HpyCH4V TGCA 9 cut(s) 407, 555, 771, 854, 866, 884, 968, 1562, 1779
HpyF10VI GCNNNNNNNGC 4 cut(s) 430, 663, 938, 1865
HpyF3I CTNAG 6 cut(s) 47, 367, 376, 386, 731, 1581
HpySE526I ACGT 2 cut(s) 449, 687
Hsp92I GRCGYC 1 cut(s) 151
HspAI GCGC 3 cut(s) 151, 170, 516
KasI GGCGCC 1 cut(s) 150
Kzo9I GATC 7 cut(s) 178, 211, 305, 700, 1300, 1414, 1819
LmnI GCTCC 2 cut(s) 1445, 1816
Lsp1109I GCAGC 6 cut(s) 179, 411, 608, 878, 980, 1012
LweI GCATC 3 cut(s) 1162, 1214, 1788
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 3 cut(s) 23, 441, 1392
MaeII ACGT 2 cut(s) 449, 687
MaeIII GTNAC 5 cut(s) 650, 1548, 1672, 1927, 1951
MalI GATC 7 cut(s) 180, 213, 307, 702, 1302, 1416, 1821
MboI GATC 7 cut(s) 178, 211, 305, 700, 1300, 1414, 1819
MboII GAAGA 9 cut(s) 127, 769, 922, 991, 994, 1058, 1250, 1651, 1874
MflI RGATCY 1 cut(s) 1414
MlsI TGGCCA 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 141
Mly113I GGCGCC 1 cut(s) 151
MlyI GAGTC 2 cut(s) 409, 721
MmeI TCCRAC 5 cut(s) 435, 734, 853, 1419, 1510
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MseI TTAA 3 cut(s) 417, 573, 1010
MslI CAYNNNNRTG 3 cut(s) 550, 556, 1739
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 8 cut(s) 33, 108, 189, 615, 698, 838, 1756, 1967
MspR9I CCNGG 3 cut(s) 108, 189, 474
Mva1269I GAATGC 1 cut(s) 657
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 4 cut(s) 430, 663, 938, 1865
NarI GGCGCC 1 cut(s) 151
NciI CCSGG 2 cut(s) 108, 189
NdeI CATATG 1 cut(s) 1848
NdeII GATC 7 cut(s) 178, 211, 305, 700, 1300, 1414, 1819
NlaIV GGNNCC 5 cut(s) 64, 152, 508, 842, 1971
NmuCI GTSAC 1 cut(s) 1548
NspI RCATGY 4 cut(s) 648, 1270, 1549, 1755
NspV TTCGAA 1 cut(s) 1342
OliI CACNNNNGTG 1 cut(s) 1739
PagI TCATGA 3 cut(s) 1156, 1164, 1762
PaqCI CACCTGC 1 cut(s) 962
PciI ACATGT 2 cut(s) 644, 1545
PctI GAATGC 1 cut(s) 657
PfeI GAWTC 6 cut(s) 4, 437, 533, 1453, 1759, 1843
PkrI GCNGC 6 cut(s) 169, 426, 623, 868, 970, 1027
PleI GAGTC 2 cut(s) 408, 721
PluTI GGCGCC 1 cut(s) 154
PpsI GAGTC 2 cut(s) 408, 721
PscI ACATGT 2 cut(s) 644, 1545
PsiI TTATAA 1 cut(s) 1086
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 5 cut(s) 64, 152, 508, 842, 1971
PspPI GGNCC 4 cut(s) 506, 612, 840, 1076
PstI CTGCAG 2 cut(s) 409, 868
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 1414
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 2 cut(s) 222, 1371
RsaNI GTAC 2 cut(s) 221, 1370
RseI CAYNNNNRTG 3 cut(s) 550, 556, 1739
SaqAI TTAA 3 cut(s) 417, 573, 1010
SatI GCNGC 6 cut(s) 168, 425, 622, 867, 969, 1026
Sau3AI GATC 7 cut(s) 178, 211, 305, 700, 1300, 1414, 1819
Sau96I GGNCC 4 cut(s) 506, 612, 840, 1076
SbfI CCTGCAGG 1 cut(s) 409
ScaI AGTACT 1 cut(s) 1371
SchI GAGTC 2 cut(s) 409, 721
ScrFI CCNGG 3 cut(s) 108, 189, 474
SdaI CCTGCAGG 1 cut(s) 409
SexAI ACCWGGT 1 cut(s) 472
SfaNI GCATC 3 cut(s) 1162, 1214, 1788
SfcI CTRYAG 2 cut(s) 405, 864
SfoI GGCGCC 1 cut(s) 152
SfuI TTCGAA 1 cut(s) 1342
SinI GGWCC 3 cut(s) 506, 612, 840
SmiMI CAYNNNNRTG 3 cut(s) 550, 556, 1739
SmlI CTYRAG 1 cut(s) 1362
SmoI CTYRAG 1 cut(s) 1362
Sse8387I CCTGCAGG 1 cut(s) 409
SsiI CCGC 4 cut(s) 26, 504, 599, 1880
SspDI GGCGCC 1 cut(s) 150
SspI AATATT 1 cut(s) 1292
SspMI CTAG 3 cut(s) 23, 441, 1392
StyD4I CCNGG 3 cut(s) 106, 187, 472
TaaI ACNGT 3 cut(s) 362, 485, 764
TaiI ACGT 2 cut(s) 452, 690
TaqI TCGA 5 cut(s) 81, 1276, 1342, 1822, 1904
TatI WGTACW 1 cut(s) 1369
TfiI GAWTC 6 cut(s) 4, 437, 533, 1453, 1759, 1843
Tru1I TTAA 3 cut(s) 417, 573, 1010
Tru9I TTAA 3 cut(s) 417, 573, 1010
TscAI CASTG 2 cut(s) 367, 1746
TseFI GTSAC 1 cut(s) 1548
TseI GCWGC 6 cut(s) 167, 424, 621, 866, 968, 1025
Tsp45I GTSAC 1 cut(s) 1548
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 2 cut(s) 367, 1746
VpaK11BI GGWCC 3 cut(s) 506, 612, 840
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 1 cut(s) 1666
XbaI TCTAGA 1 cut(s) 1391
XceI RCATGY 4 cut(s) 648, 1270, 1549, 1755
XspI CTAG 3 cut(s) 23, 441, 1392
ZrmI AGTACT 1 cut(s) 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.