Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000114

Physical Location & Seq

Genomic Coordinates Reverse (-)

45149022 .. 45151265

Gene Structure 2244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGACATCACCCTGATCCCATGTTGTCAAACCTTATGGTATCTCTTTGGAATAGGCCTTGCTCAACACCTCAAGGCCACCACTTTTTTCCTACTCCCCAACATAGCAACCTCAAATTCTTGCCTCCAAAACTACCAGTCCAAGCTTACCTCTCTAGCAATCCCTTCCAATCTTCTCTCTTATTGTTTTGACCCTTTACAGTTTGTAACTGGTCCCAATTTCTGTGCCCAAATTGAATCTTCCCAAGATTTGATCTCCAAGCTTAATCAGATCACTGGAATTGACTCTGGATGCAAGCCAGACCTCGCAGATCTCTCACCCTGTGATGTTTGCGCAACAACTATGTTGCAAATTTATCAACAATTAGTCACAGTTGATGGTAACATCTCTCACTCTAGAAATTGTTTGTACTTTACAATGCTGTATGTTGGTACGATCAATGACCAGGGTCTTGAAAGTGAGGGTGTCGTGTCTTGTATTTTCGCTTTACCTTTATCGAATGGTTTCCACAAAAAGAGATATACCTCTCTTGTAACTGCAGTGGTCTCAGCAACAGGAGGATTGCTTACGATATTATTTTTATACTTTTTATGGAAGAAATCTTTGGGAAAGAAAAGGGCATATAGTGAGAATCTTGGGAATGTTAGTGCTGGAGATGGGAAGAATGATACAGAACTACCGATCTTAAATTTAAGGAGTATATTAGCTGCTACAAACAACTTTTCTGAAGCTAATAAACTAGGAGAGGGAGGGTTTGGCCCTGTTTATAAGGGCATCTTAAATGAAAATCAAGAGATAGCCATAAAAAGACTGTCAAAGAAGTCAGGGCAAGGATGTCAAGAGTTCATGAATGAATTAAAACTTATAGCAAAGCTCCAACATAGCAATCTTGTTAGGCTCTTGGGTTGCTGTATTGAAGAGGAAGAAATGATATTAATCTACGAGTACATGCCTAATCGAAGTTTGGACAAATTTTTGTTTGCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

329

Amino Acids

36.33

Weight (kDa)

6.11

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	7 - 135	1.2e-27	SPARK
Pkinase	PF00069	242 - 326	2.4e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	244 - 326	1.7e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica	MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica	Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis	pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis	RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata	RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora	Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa	Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha	Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana	Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
Acc16I	TGCGCA	1 cut(s)	334
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	4 cut(s)	115, 351, 688, 971
AcuI	CTGAAG	1 cut(s)	747
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	3 cut(s)	410, 433, 947
AgsI	TTSAA	3 cut(s)	236, 455, 917
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
AluBI	AGCT	5 cut(s)	145, 262, 707, 731, 874
AluI	AGCT	5 cut(s)	145, 262, 707, 731, 874
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	1 cut(s)	10
AoxI	GGCC	3 cut(s)	55, 75, 757
ApeKI	GCWGC	1 cut(s)	707
ApoI	RAATTY	4 cut(s)	115, 351, 688, 971
AseI	ATTAAT	1 cut(s)	935
Asp700I	GAANNNNTTC	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	212, 758
AsuHPI	GGTGA	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	2 cut(s)	371, 650
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	3 cut(s)	155, 396, 740
BfmI	CTRYAG	1 cut(s)	537
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	709
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	212, 758
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	281, 783
BoxI	GACNNNNGTC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	935
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	445
Bse1I	ACTGG	3 cut(s)	136, 214, 280
Bse8I	GATNNNNATC	1 cut(s)	935
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	2 cut(s)	296, 839
BseJI	GATNNNNATC	1 cut(s)	935
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	3 cut(s)	136, 214, 280
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	694
BshFI	GGCC	3 cut(s)	57, 77, 759
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	3 cut(s)	57, 77, 759
Bso31I	GGTCTC	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	6 cut(s)	15, 252, 270, 310, 435, 681
BspANI	GGCC	3 cut(s)	57, 77, 759
BspCNI	CTCAG	1 cut(s)	560
BspHI	TCATGA	1 cut(s)	846
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	550
BsrI	ACTGG	3 cut(s)	136, 214, 280
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	6 cut(s)	15, 252, 270, 310, 435, 681
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	3 cut(s)	201, 373, 813
Bst6I	CTCTTC	1 cut(s)	912
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	296, 839
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	6 cut(s)	18, 255, 273, 313, 438, 684
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	6 cut(s)	15, 252, 270, 310, 435, 681
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	952
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	694
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	57, 77, 759
BtsCI	GGATG	2 cut(s)	296, 839
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	2 cut(s)	273, 546
Cac8I	GCNNGC	1 cut(s)	296
CciI	TCATGA	1 cut(s)	846
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	212, 758
Csp6I	GTAC	3 cut(s)	409, 432, 946
CviAII	CATG	3 cut(s)	21, 847, 949
CviQI	GTAC	3 cut(s)	409, 432, 946
DdeI	CTNAG	1 cut(s)	547
DpnI	GATC	6 cut(s)	17, 254, 272, 312, 437, 683
DpnII	GATC	6 cut(s)	15, 252, 270, 310, 435, 681
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
Eco147I	AGGCCT	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	24, 850, 952
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	3 cut(s)	20, 846, 948
Fnu4HI	GCNGC	1 cut(s)	708
FokI	GGATG	2 cut(s)	303, 846
Fsp4HI	GCNGC	1 cut(s)	708
FspBI	CTAG	3 cut(s)	155, 396, 740
FspI	TGCGCA	1 cut(s)	334
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	708
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	3 cut(s)	57, 77, 759
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	24, 850, 952
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	2 cut(s)	143, 260
HinfI	GANTC	3 cut(s)	236, 284, 631
HphI	GGTGA	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	270, 727
Hpy188III	TCNNGA	6 cut(s)	288, 396, 452, 791, 839, 847
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	3 cut(s)	201, 373, 813
HpyCH4V	TGCA	3 cut(s)	294, 349, 539
HpyF3I	CTNAG	1 cut(s)	547
Hsp92II	CATG	3 cut(s)	24, 850, 952
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	6 cut(s)	15, 252, 270, 310, 435, 681
LmnI	GCTCC	1 cut(s)	879
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	2 cut(s)	281, 783
MaeI	CTAG	3 cut(s)	155, 396, 740
MaeIII	GTNAC	4 cut(s)	205, 367, 380, 532
MalI	GATC	6 cut(s)	17, 254, 272, 312, 437, 683
MboI	GATC	6 cut(s)	15, 252, 270, 310, 435, 681
MboII	GAAGA	6 cut(s)	164, 231, 607, 673, 929, 935
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	901
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	6 cut(s)	264, 686, 692, 779, 857, 935
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
NdeII	GATC	6 cut(s)	15, 252, 270, 310, 435, 681
NlaIII	CATG	3 cut(s)	24, 850, 952
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	367
NsbI	TGCGCA	1 cut(s)	334
NspI	RCATGY	1 cut(s)	952
PagI	TCATGA	1 cut(s)	846
PceI	AGGCCT	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	236, 631
PkrI	GCNGC	1 cut(s)	709
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	447
PshBI	ATTAAT	1 cut(s)	935
PsiI	TTATAA	1 cut(s)	768
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	212, 758
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	3 cut(s)	410, 433, 947
RsaNI	GTAC	3 cut(s)	409, 432, 946
SaqAI	TTAA	6 cut(s)	264, 686, 692, 779, 857, 935
SatI	GCNGC	1 cut(s)	708
Sau3AI	GATC	6 cut(s)	15, 252, 270, 310, 435, 681
Sau96I	GGNCC	2 cut(s)	212, 758
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	281, 783
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	57
SspMI	CTAG	3 cut(s)	155, 396, 740
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	3 cut(s)	201, 373, 813
TaqI	TCGA	2 cut(s)	497, 958
TatI	WGTACW	2 cut(s)	408, 945
TfiI	GAWTC	2 cut(s)	236, 631
Tru1I	TTAA	6 cut(s)	264, 686, 692, 779, 857, 935
Tru9I	TTAA	6 cut(s)	264, 686, 692, 779, 857, 935
TscAI	CASTG	2 cut(s)	280, 546
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	4 cut(s)	798, 835, 863, 867
TspRI	CASTG	2 cut(s)	280, 546
VpaK11BI	GGWCC	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	935
XapI	RAATTY	4 cut(s)	115, 351, 688, 971
XbaI	TCTAGA	1 cut(s)	395
XceI	RCATGY	1 cut(s)	952
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	3 cut(s)	155, 396, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.