Rh1DG082500

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000114
Physical Location & Seq
Reverse (-)
15086531 .. 15093172
6642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG082500.1

Sequence Viewer

Length: 1410 bp
ATGGGGTGGCTCCTGTGTTACGTTGTAACAGTGCTCTTATCTCATATCCTGCCATTCTGTACCTGCCAAGACAAAATTGTACCAGGACAGCATATCAGTGGTAACTTGACTTTGGTTTCTTCCCTTGGGACCTTTTCATTAGGCTTCTTCAATCCTGAAAATTCTACTAAATACTTCCTTGGTATACGATTCAACAAATTCCCAACTACTGCATTAGTATGGGTAGCTAATAGAGAATCTCCACTTGATTCTCCGGGTTTCTTTATGCTCAGCAGTGATGGAAATCTTGTGGTGTTGGATCAGACTAGAAAACTTGTCTGGTCAACTAAAGCATCCGTATCTGCTTCTGCAATGAATCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACTTTGTGGCAGAGCTTCGATCATCCCTCTGATACTGTGTTGCCTGGCATGAAGATTAGCTTGAACAAAAAGACTGGCAAACAAAGGCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAGTTCACCTTCGGCATAGATCCTAAAGTACCAGTTCAGGCCTTTATCTGGAAGGAAACTACTCCGTATGTTAGAAGTTCTGTGTACATTGGCCAGGATACAAGAACACAGTTTCAAAATCCAGGTGGAACTGCGTTTTTCAATTCATACAACTTTGATGTTGATGAGGTTTATCTTGCTGGCAGTGTCTCGGATAGCTCAGTAAAGTGGAGGGGGTGGTTGGATCCCACGGGGCAAATTAAACAGCAGTTGTGGCAGAATTCTAGTAAAACGTGGTTGGACGTAGGGAATCCAGGTGATATCTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGTGAACCCCTGTCATCACCATGCAAGTGTTTGACTGGTTTTACAGCCAAGTTTCCGAACCAATCGGCGGTAGGGGATTGGTCCAGTGGCTGCATTAGGGAAAAGGTGTTGACATGTGGTAACGGCATACAAGGTTACTTTTCAAAGCTTGAAAAGGTGAAACTGCCGGATCATTTAGTTCTCTTAGAGAATAGGAGTATGAGCGAGTGTGACTCTGAATGCCAGCAGAACTGTTCTTGTACAGCTTATGCTTATGTAAATGCGACAGATGGAAGTAATATTGGGACTTGTTTGGCATGGTTTGGCGAATTACTGGATCTAGTAGAGAATAAAACTACTGGTGCAAATGATATTTATATTCGTGTTCATGGCTCCGAACTAGGCAAAAAGGGTCTTTCCGTTAATTCCTTGAAGCGGACCCTTGTAATTGCAATAGTCTCTGCAGCTGCAGTTGGATTGCTTACAATAACTTTTGGCTATTTCTTTTGGAAGAAAAAATTGGAAAAGAAAGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

469

Amino Acids

51.72

Weight (kDa)

8.09

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 172 2.4e-32 D-mannose binding lectin
S_locus_glycop PF00954 230 - 314 4.7e-14 S-locus glycoprotein domain
PAN_2 PF08276 343 - 404 2.7e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 501
AccI GTMKAC 1 cut(s) 184
AciI CCGC 3 cut(s) 867, 959, 1306
AclWI GGATC 7 cut(s) 306, 524, 557, 761, 774, 1068, 1215
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 3 cut(s) 160, 197, 802
AcyI GRCGYC 1 cut(s) 502
AdeI CACNNNGTG 1 cut(s) 420
AfaI GTAC 5 cut(s) 61, 81, 573, 629, 1132
AfeI AGCGCT 1 cut(s) 522
AfiI CCNNNNNNNGG 4 cut(s) 539, 591, 958, 1305
AflIII ACRYGT 1 cut(s) 1004
AgsI TTSAA 9 cut(s) 151, 193, 407, 478, 659, 685, 1035, 1043, 1303
AjnI CCWGG 6 cut(s) 82, 457, 512, 636, 664, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 1373, 1405
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 8 cut(s) 227, 402, 429, 474, 741, 1039, 1136, 1337
AluI AGCT 8 cut(s) 227, 402, 429, 474, 741, 1039, 1136, 1337
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 736, 1333
AlwI GGATC 7 cut(s) 306, 524, 557, 761, 774, 1068, 1215
AlwNI CAGNNNCTG 1 cut(s) 981
Aor51HI AGCGCT 1 cut(s) 522
AoxI GGCC 3 cut(s) 582, 634, 1402
ApeKI GCWGC 4 cut(s) 518, 981, 1334, 1337
ApoI RAATTY 3 cut(s) 160, 197, 802
AspLEI GCGC 2 cut(s) 504, 523
AspS9I GGNCC 4 cut(s) 129, 869, 972, 1308
AsuC2I CCSGG 2 cut(s) 255, 540
AsuHPI GGTGA 5 cut(s) 541, 851, 900, 905, 1060
AvaII GGWCC 4 cut(s) 129, 869, 972, 1308
BalI TGGCCA 1 cut(s) 636
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 530, 968, 1324, 1346
BccI CCATC 2 cut(s) 272, 1154
BceAI ACGGC 1 cut(s) 1030
BciT130I CCWGG 6 cut(s) 84, 459, 514, 638, 666, 837
BciVI GTATCC 2 cut(s) 373, 634
BcnI CCSGG 2 cut(s) 255, 540
BcoDI GTCTC 2 cut(s) 736, 1333
BfaI CTAG 5 cut(s) 306, 374, 807, 1211, 1271
BfmI CTRYAG 2 cut(s) 1332, 1338
BfoI RGCGCY 2 cut(s) 505, 524
BfuAI ACCTGC 1 cut(s) 71
BfuI GTATCC 2 cut(s) 373, 634
BisI GCNGC 4 cut(s) 519, 982, 1335, 1338
BlpI GCTNAGC 1 cut(s) 269
BlsI GCNGC 4 cut(s) 520, 983, 1336, 1339
Bme1390I CCNGG 8 cut(s) 84, 255, 459, 514, 540, 638, 666, 837
Bme18I GGWCC 4 cut(s) 129, 869, 972, 1308
BmgT120I GGNCC 4 cut(s) 129, 869, 972, 1308
BmiI GGNNCC 7 cut(s) 11, 130, 503, 768, 871, 1264, 1310
BmrFI CCNGG 8 cut(s) 84, 255, 459, 514, 540, 638, 666, 837
BmsI GCATC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 1088, 1120
Bpu1102I GCTNAGC 1 cut(s) 269
BpuMI CCSGG 2 cut(s) 255, 540
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 502
BsaJI CCNNGG 4 cut(s) 124, 178, 513, 771
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 4 cut(s) 539, 591, 958, 1305
Bse1I ACTGG 7 cut(s) 370, 493, 575, 931, 975, 1209, 1234
Bse3DI GCAATG 2 cut(s) 357, 862
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 6 cut(s) 84, 459, 514, 638, 666, 837
BseDI CCNNGG 4 cut(s) 124, 178, 513, 771
BseGI GGATG 3 cut(s) 332, 436, 509
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 4 cut(s) 539, 591, 958, 1305
BseMI GCAATG 2 cut(s) 357, 862
BseMII CTCAG 3 cut(s) 283, 389, 756
BseNI ACTGG 7 cut(s) 370, 493, 575, 931, 975, 1209, 1234
BseXI GCAGC 4 cut(s) 530, 968, 1324, 1346
BshFI GGCC 3 cut(s) 584, 636, 1404
BshNI GGYRCC 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 4 cut(s) 254, 384, 540, 1058
BslFI GGGAC 3 cut(s) 142, 855, 1189
BslI CCNNNNNNNGG 4 cut(s) 539, 591, 958, 1305
BsmAI GTCTC 2 cut(s) 736, 1333
BsmFI GGGAC 3 cut(s) 142, 855, 1189
BsmI GAATGC 1 cut(s) 1115
BsnI GGCC 3 cut(s) 584, 636, 1404
Bsp1286I GDGCHC 1 cut(s) 36
Bsp1407I TGTACA 2 cut(s) 627, 1130
Bsp143I GATC 7 cut(s) 298, 433, 529, 562, 766, 1060, 1207
Bsp1720I GCTNAGC 1 cut(s) 269
BspACI CCGC 3 cut(s) 867, 959, 1306
BspANI GGCC 3 cut(s) 584, 636, 1404
BspCNI CTCAG 3 cut(s) 282, 390, 755
BspLI GGNNCC 7 cut(s) 11, 130, 503, 768, 871, 1264, 1310
BspMAI CTGCAG 2 cut(s) 1336, 1342
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 7 cut(s) 306, 524, 557, 761, 774, 1068, 1215
BspT107I GGYRCC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 357, 862
BsrGI TGTACA 2 cut(s) 627, 1130
BsrI ACTGG 7 cut(s) 370, 493, 575, 931, 975, 1209, 1234
BssECI CCNNGG 4 cut(s) 124, 178, 513, 771
BssMI GATC 7 cut(s) 298, 433, 529, 562, 766, 1060, 1207
BssNAI GTATAC 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 502
BssT1I CCWWGG 2 cut(s) 124, 178
Bst1107I GTATAC 1 cut(s) 185
Bst2UI CCWGG 6 cut(s) 84, 459, 514, 638, 666, 837
Bst4CI ACNGT 4 cut(s) 31, 451, 654, 1124
BstACI GRCGYC 1 cut(s) 502
BstAUI TGTACA 2 cut(s) 627, 1130
BstC8I GCNNGC 2 cut(s) 724, 1115
BstDEI CTNAG 4 cut(s) 269, 398, 742, 1075
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 3 cut(s) 332, 436, 509
BstH2I RGCGCY 2 cut(s) 505, 524
BstHHI GCGC 2 cut(s) 504, 523
BstKTI GATC 7 cut(s) 301, 436, 532, 565, 769, 1063, 1210
BstMAI GTCTC 2 cut(s) 736, 1333
BstMBI GATC 7 cut(s) 298, 433, 529, 562, 766, 1060, 1207
BstMWI GCNNNNNNNGC 1 cut(s) 796
BstNI CCWGG 6 cut(s) 84, 459, 514, 638, 666, 837
BstNSI RCATGY 1 cut(s) 1008
BstSCI CCNGG 8 cut(s) 82, 253, 457, 512, 538, 636, 664, 835
BstSFI CTRYAG 2 cut(s) 1332, 1338
BstV1I GCAGC 4 cut(s) 530, 968, 1324, 1346
BstX2I RGATCY 3 cut(s) 562, 766, 1207
BstYI RGATCY 3 cut(s) 562, 766, 1207
BstZ17I GTATAC 1 cut(s) 185
BsuI GTATCC 2 cut(s) 373, 634
BsuRI GGCC 3 cut(s) 584, 636, 1404
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 3 cut(s) 332, 436, 509
BtsI GCAGTG 2 cut(s) 280, 733
BtsIMutI CAGTG 5 cut(s) 36, 103, 280, 733, 982
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 2 cut(s) 724, 1115
CaiI CAGNNNCTG 1 cut(s) 981
CfoI GCGC 2 cut(s) 504, 523
Cfr13I GGNCC 4 cut(s) 129, 869, 972, 1308
Csp6I GTAC 5 cut(s) 60, 80, 572, 628, 1131
CviAII CATG 5 cut(s) 463, 912, 1005, 1188, 1259
CviQI GTAC 5 cut(s) 60, 80, 572, 628, 1131
DdeI CTNAG 4 cut(s) 269, 398, 742, 1075
DinI GGCGCC 1 cut(s) 503
DpnI GATC 7 cut(s) 300, 435, 531, 564, 768, 1062, 1209
DpnII GATC 7 cut(s) 298, 433, 529, 562, 766, 1060, 1207
DraIII CACNNNGTG 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 124, 178
Eco147I AGGCCT 1 cut(s) 584
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 4 cut(s) 129, 869, 972, 1308
Eco47III AGCGCT 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 802
EcoRII CCWGG 6 cut(s) 82, 457, 512, 636, 664, 835
EcoRV GATATC 1 cut(s) 844
EcoT14I CCWWGG 2 cut(s) 124, 178
EgeI GGCGCC 1 cut(s) 503
EheI GGCGCC 1 cut(s) 503
ErhI CCWWGG 2 cut(s) 124, 178
FaeI CATG 5 cut(s) 466, 915, 1008, 1191, 1262
FalI AAGNNNNNCTT 4 cut(s) 458, 490, 536, 568
FaqI GGGAC 3 cut(s) 142, 855, 1189
FatI CATG 5 cut(s) 462, 911, 1004, 1187, 1258
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 4 cut(s) 519, 982, 1335, 1338
FokI GGATG 3 cut(s) 319, 423, 496
Fsp4HI GCNGC 4 cut(s) 519, 982, 1335, 1338
FspBI CTAG 5 cut(s) 306, 374, 807, 1211, 1271
GlaI GCGC 2 cut(s) 503, 522
GluI GCNGC 4 cut(s) 519, 982, 1335, 1338
HaeII RGCGCY 2 cut(s) 505, 524
HaeIII GGCC 3 cut(s) 584, 636, 1404
HapII CCGG 4 cut(s) 254, 384, 540, 1058
HhaI GCGC 2 cut(s) 504, 523
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 5 cut(s) 466, 915, 1008, 1191, 1262
Hin6I GCGC 2 cut(s) 502, 521
HinP1I GCGC 2 cut(s) 502, 521
HincII GTYRAC 2 cut(s) 324, 1002
HindII GTYRAC 2 cut(s) 324, 1002
HindIII AAGCTT 1 cut(s) 1037
HinfI GANTC 6 cut(s) 189, 236, 248, 355, 832, 1103
HpaII CCGG 4 cut(s) 254, 384, 540, 1058
HphI GGTGA 5 cut(s) 541, 851, 900, 905, 1060
Hpy166II GTNNAC 6 cut(s) 185, 324, 549, 628, 896, 1002
Hpy188I TCNGA 7 cut(s) 303, 399, 445, 736, 948, 1108, 1267
Hpy188III TCNNGA 2 cut(s) 155, 592
Hpy8I GTNNAC 6 cut(s) 185, 324, 549, 628, 896, 1002
HpyAV CCTTC 2 cut(s) 562, 589
HpyCH4III ACNGT 4 cut(s) 31, 451, 654, 1124
HpyCH4IV ACGT 3 cut(s) 21, 815, 825
HpyCH4V TGCA 8 cut(s) 212, 350, 915, 984, 1235, 1322, 1334, 1340
HpyF10VI GCNNNNNNNGC 1 cut(s) 796
HpyF3I CTNAG 4 cut(s) 269, 398, 742, 1075
HpySE526I ACGT 3 cut(s) 21, 815, 825
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 5 cut(s) 466, 915, 1008, 1191, 1262
HspAI GCGC 2 cut(s) 502, 521
KasI GGCGCC 1 cut(s) 501
Kzo9I GATC 7 cut(s) 298, 433, 529, 562, 766, 1060, 1207
LmnI GCTCC 2 cut(s) 15, 1268
Lsp1109I GCAGC 4 cut(s) 530, 968, 1324, 1346
LweI GCATC 1 cut(s) 341
MaeI CTAG 5 cut(s) 306, 374, 807, 1211, 1271
MaeII ACGT 3 cut(s) 21, 815, 825
MaeIII GTNAC 7 cut(s) 17, 25, 101, 412, 1010, 1025, 1100
MalI GATC 7 cut(s) 300, 435, 531, 564, 768, 1062, 1209
MboI GATC 7 cut(s) 298, 433, 529, 562, 766, 1060, 1207
MboII GAAGA 5 cut(s) 111, 139, 419, 478, 1393
MflI RGATCY 3 cut(s) 562, 766, 1207
MhlI GDGCHC 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 636
MluNI TGGCCA 1 cut(s) 636
Mly113I GGCGCC 1 cut(s) 502
MlyI GAGTC 1 cut(s) 1097
MmeI TCCRAC 4 cut(s) 276, 744, 801, 1324
MnlI CCTC 5 cut(s) 370, 451, 703, 747, 884
Mox20I TGGCCA 1 cut(s) 636
MscI TGGCCA 1 cut(s) 636
MseI TTAA 2 cut(s) 783, 1293
MslI CAYNNNNRTG 4 cut(s) 96, 217, 910, 916
Msp20I TGGCCA 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 1337
MspI CCGG 4 cut(s) 254, 384, 540, 1058
MspR9I CCNGG 8 cut(s) 84, 255, 459, 514, 540, 638, 666, 837
Mva1269I GAATGC 1 cut(s) 1115
MvaI CCWGG 6 cut(s) 84, 459, 514, 638, 666, 837
MwoI GCNNNNNNNGC 1 cut(s) 796
NarI GGCGCC 1 cut(s) 502
NciI CCSGG 2 cut(s) 255, 540
NdeII GATC 7 cut(s) 298, 433, 529, 562, 766, 1060, 1207
NlaIII CATG 5 cut(s) 466, 915, 1008, 1191, 1262
NlaIV GGNNCC 7 cut(s) 11, 130, 503, 768, 871, 1264, 1310
NmuCI GTSAC 2 cut(s) 412, 1100
NspI RCATGY 1 cut(s) 1008
PceI AGGCCT 1 cut(s) 584
PciI ACATGT 1 cut(s) 1004
PctI GAATGC 1 cut(s) 1115
PfeI GAWTC 5 cut(s) 189, 236, 248, 355, 832
PkrI GCNGC 4 cut(s) 520, 983, 1336, 1339
PleI GAGTC 1 cut(s) 1097
PluTI GGCGCC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 1097
PpuMI RGGWCCY 1 cut(s) 129
PscI ACATGT 1 cut(s) 1004
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 6 cut(s) 82, 457, 512, 636, 664, 835
PspGI CCWGG 6 cut(s) 82, 457, 512, 636, 664, 835
PspN4I GGNNCC 7 cut(s) 11, 130, 503, 768, 871, 1264, 1310
PspPI GGNCC 4 cut(s) 129, 869, 972, 1308
PspPPI RGGWCCY 1 cut(s) 129
PstI CTGCAG 2 cut(s) 1336, 1342
PstNI CAGNNNCTG 1 cut(s) 981
PsuI RGATCY 3 cut(s) 562, 766, 1207
PvuII CAGCTG 1 cut(s) 1337
RsaI GTAC 5 cut(s) 61, 81, 573, 629, 1132
RsaNI GTAC 5 cut(s) 60, 80, 572, 628, 1131
RseI CAYNNNNRTG 4 cut(s) 96, 217, 910, 916
SaqAI TTAA 2 cut(s) 783, 1293
SatI GCNGC 4 cut(s) 519, 982, 1335, 1338
Sau3AI GATC 7 cut(s) 298, 433, 529, 562, 766, 1060, 1207
Sau96I GGNCC 4 cut(s) 129, 869, 972, 1308
SchI GAGTC 1 cut(s) 1097
ScrFI CCNGG 8 cut(s) 84, 255, 459, 514, 540, 638, 666, 837
SduI GDGCHC 1 cut(s) 36
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 2 cut(s) 1332, 1338
SfoI GGCGCC 1 cut(s) 503
SinI GGWCC 4 cut(s) 129, 869, 972, 1308
SmiMI CAYNNNNRTG 4 cut(s) 96, 217, 910, 916
SseBI AGGCCT 1 cut(s) 584
SsiI CCGC 3 cut(s) 867, 959, 1306
SspDI GGCGCC 1 cut(s) 501
SspI AATATT 1 cut(s) 1171
SspMI CTAG 5 cut(s) 306, 374, 807, 1211, 1271
StuI AGGCCT 1 cut(s) 584
StyD4I CCNGG 8 cut(s) 82, 253, 457, 512, 538, 636, 664, 835
StyI CCWWGG 2 cut(s) 124, 178
TaaI ACNGT 4 cut(s) 31, 451, 654, 1124
TaiI ACGT 3 cut(s) 24, 818, 828
TaqI TCGA 1 cut(s) 432
TatI WGTACW 2 cut(s) 627, 1130
TfiI GAWTC 5 cut(s) 189, 236, 248, 355, 832
Tru1I TTAA 2 cut(s) 783, 1293
Tru9I TTAA 2 cut(s) 783, 1293
TscAI CASTG 5 cut(s) 36, 103, 280, 733, 982
TseFI GTSAC 2 cut(s) 412, 1100
TseI GCWGC 4 cut(s) 518, 981, 1334, 1337
Tsp45I GTSAC 2 cut(s) 412, 1100
TspDTI ATGAA 5 cut(s) 126, 368, 479, 678, 1247
TspGWI ACGGA 3 cut(s) 325, 597, 1279
TspRI CASTG 5 cut(s) 36, 103, 280, 733, 982
VpaK11BI GGWCC 4 cut(s) 129, 869, 972, 1308
XapI RAATTY 3 cut(s) 160, 197, 802
XceI RCATGY 1 cut(s) 1008
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 5 cut(s) 306, 374, 807, 1211, 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.