Rroxscaffold_4G00327650

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000114
Physical Location & Seq
Reverse (-)
60442959 .. 60446838
3880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327650.1

Sequence Viewer

Length: 2472 bp
ATGAACCTTTTTTTCCTTCCTCTGTCTCACTGTTTCCGAATGGGGTGGCTCTTGTGTTACCTTGTAACAGTGCTCTTATCTCATATCCTGCCATTCTGTACCTGCCAAGACAAAATTGTACCAGGACAACATATCAGTGGTAACCTGACTTTGGTTTCTTCCCTTGAGACCTTTTCATTAGGCTTCTTCAATCCTGAAAATTCTACTAAATACTTCCTTGGTATACGATTCAACAAATCCCCAACTACTGCATTAGTATGGGTAGCTAATAGAGAATCTCCACTTGATTCTCCGGGTTTCTTTATGCTCAGCAGTGATGGAAATCTTGTGGTGTTGGATCAGACTAGAAAACTTGTCTGGTCAACTAAAGCATCCGTATCTGCTTCTGCAATGAATCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACTTTGTGGCAGAGCTTCGATCATCCCTCTGATACTATGTTGCCTGGCATTAAGATTAGCTTGAACAAAACGACTGGCCAACAAAGGCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAGTTCACCTTCGGCATAGATCCTAAAGTGCCAGTTCAGTCCTTTGTCTGGAAGGAAACTACTCCGTATGCTAGAAGTTCTGTGTACATTGGCCAGGATACAAGAACACAATTTCAAAATCCAGGTGGAACTGCTTTTTTCTATTCATACAACTTTGATGTTGATGAGGTTTATCTTGCTTGCAGTGTCTCGGATAGCTCAGTAAAATGGAGGGCCTGGTTGGATCCCACGGGGCAACTTAAACAACAGTTGTGGCAGAGTTCTAGTAAAACGTGGTTGGAAGTAGGGAATTCATGGCCCGTTGATATCTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGTGAACCCATGTCATCACCATGCAAGTGTTTGACTGGTTTTACAGCCAAGTTTCCAAACCAATCGGCGGTAGGGGATTGGTCCAGTGGCTGCATTAGGGAAAAGGTGTTGACATGTGGTAACGGCATACAAGGTTACTTTCCAAAGCTTGAAAAGGTGAAACTGCCGGATCATTTTGTTCTGTTAGAGAATAGGAGTATGAGCGAGTGTGATTCTGAATGCCAGCAGAACTGTTCTTGTACAGCTTATGCTTATGTAAACGCGACAGATGGAAGTAATATTGGGACTTGTTTGGCATGGTTTGGCGAATTACTGGATCTAGTAGAGAATAAAACTATTCGTGCACATGATATTTATATTCGTGTTCATGGCTCCGAACTACGCAAAAAGGGTCTTTCCGTTAATTCCTTAATTGCAATAGTCTCTGCAGCTGCAGTTGGATTGCTTACAATAACTTTTGGCTATTTCTTTTGGAAGAAAAAATTGGAAAAGAAAGGTAAGCAGAATATAAGTAATGTTAGTGCAGGAGGTGGGAAGAATGATACAGAATTACCACTCTTCAGTTTAAGGAGTATGTTAGCTGCAACAAACAACTTCTCTGAAGCGAATAAGCTTGGAGAGGGGGGGTTCGGCCCTGTTTATAAGGGAATTTTGCCAGAAAATCAAGAAGTGGCCATAAAGAGGCTATCAAAGAAGTCTGGGCAAGGACATCGTGAGTTCAAGAATGAGTTGAAACTTATAGCCAAACTCCAGCATACCAATCTTGTAAGGCTATTGGGTTGTTGTATGGAAGGAGATGAAATGATATTGATCTATGAATACATGTCTAATCGAAGTTTGGACAAATTTTTGTTTGATGCCTTTGAAAAGACAAAGTTAGATTGGGATACACGCTTTCGAATTATACAAGGTATTGCTCAAGGAGTACTATATATCCACAAGTACTCTAGATTGAAAATCATCCACAGAGATCTAAAAGCAAGCAATGTTCTGTTGGACGGAACAATGAACCCCAAAGTGTCCGACTTTGGAATGGCGAGAATTTTTGACATAAATCAAATTGAAGCAAATACTAACAAGGTTGTTGGAACATACGGCTATATGTCTCCCGAATATGCACTCTTTGGTCATTTCTCCGAGAAATTGGATGTGTTTAGTTTCGGAGTATTGTTGTTAGAGATTGTAAGCGGAAAGAAGAATGCTTCTTTTTATAGCTTTGAAAATTCACTAACGCTTGCTCAATGGGTTTGGGAATTATGGAAAGAAGGTAGAGGAGTGGAGGTAATTGACGCATCAGTAAGGGAAACATGTCGGATTCATGAAGCTTTGAGGTGTATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGTTGATCGACCAACAATGTCATCCGTTATTCATATGCTCGAGGTTGACGAAGCTACATCACTTCCACCCTCCAAAGAACCAGCTTTTTCAACATGTAGAAATTCAAGTCCTGCTACCATTTTTTTCCGACAATGTAATCACCATTACTTTGCCGAACCCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

823

Amino Acids

92.27

Weight (kDa)

7.71

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 85 - 185 6.5e-31 D-mannose binding lectin
S_locus_glycop PF00954 242 - 329 8.9e-15 S-locus glycoprotein domain
PAN_2 PF08276 358 - 419 8.9e-14 PAN-like domain
Pkinase PF00069 512 - 714 6.6e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 514 - 781 8.7e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1578
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 540
AccI GTMKAC 1 cut(s) 223
AccII CGCG 1 cut(s) 1199
AciI CCGC 3 cut(s) 912, 1004, 2124
AclWI GGATC 7 cut(s) 345, 563, 596, 800, 813, 1113, 1260
AcoI YGGCCR 3 cut(s) 529, 673, 1608
AcsI RAATTY 7 cut(s) 199, 871, 1584, 1781, 1977, 2158, 2407
AcuI CTGAAG 2 cut(s) 1480, 1557
AcyI GRCGYC 1 cut(s) 541
AdeI CACNNNGTG 1 cut(s) 459
AfaI GTAC 6 cut(s) 100, 120, 668, 1177, 1863, 1880
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 5 cut(s) 151, 578, 630, 1003, 1617
AflIII ACRYGT 4 cut(s) 1049, 1758, 2243, 2399
AjnI CCWGG 6 cut(s) 121, 496, 551, 675, 703, 797
AjuI GAANNNNNNNTTGG 2 cut(s) 1403, 1435
AloI GAACNNNNNNTCC 2 cut(s) 417, 449
Alw21I GWGCWC 2 cut(s) 75, 1282
Alw26I GTCTC 5 cut(s) 30, 161, 775, 1363, 2046
Alw44I GTGCAC 1 cut(s) 1278
AlwI GGATC 7 cut(s) 345, 563, 596, 800, 813, 1113, 1260
AlwNI CAGNNNCTG 1 cut(s) 1026
Ama87I CYCGRG 1 cut(s) 2345
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 6 cut(s) 529, 673, 795, 878, 1567, 1608
ApaLI GTGCAC 1 cut(s) 1278
ApeKI GCWGC 5 cut(s) 557, 1026, 1364, 1367, 1517
ApoI RAATTY 7 cut(s) 199, 871, 1584, 1781, 1977, 2158, 2407
AspLEI GCGC 2 cut(s) 543, 562
AspS9I GGNCC 5 cut(s) 795, 879, 914, 1017, 1568
AsuC2I CCSGG 2 cut(s) 294, 579
AsuHPI GGTGA 5 cut(s) 580, 945, 950, 1105, 2438
AsuII TTCGAA 1 cut(s) 1834
AvaI CYCGRG 1 cut(s) 2345
AvaII GGWCC 2 cut(s) 914, 1017
BaeGI GKGCMC 1 cut(s) 1282
BalI TGGCCA 3 cut(s) 531, 675, 1610
BamHI GGATCC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 540
Bbv12I GWGCWC 2 cut(s) 75, 1282
BbvI GCAGC 5 cut(s) 569, 1013, 1354, 1376, 1504
BccI CCATC 2 cut(s) 311, 1199
BceAI ACGGC 2 cut(s) 1075, 2047
BcgI CGANNNNNNTGC 2 cut(s) 1628, 1662
BciT130I CCWGG 6 cut(s) 123, 498, 553, 677, 705, 799
BciVI GTATCC 4 cut(s) 412, 673, 1816, 2282
BcnI CCSGG 2 cut(s) 294, 579
BcoDI GTCTC 5 cut(s) 30, 161, 775, 1363, 2046
BfaI CTAG 6 cut(s) 345, 413, 654, 846, 1256, 1884
BfmI CTRYAG 2 cut(s) 1362, 1368
BfoI RGCGCY 2 cut(s) 544, 563
BfuAI ACCTGC 1 cut(s) 110
BfuI GTATCC 4 cut(s) 412, 673, 1816, 2282
BglII AGATCT 1 cut(s) 1906
BisI GCNGC 5 cut(s) 558, 1027, 1365, 1368, 1518
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 5 cut(s) 559, 1028, 1366, 1369, 1519
BmcAI AGTACT 2 cut(s) 1863, 1880
Bme1390I CCNGG 8 cut(s) 123, 294, 498, 553, 579, 677, 705, 799
Bme18I GGWCC 2 cut(s) 914, 1017
BmeT110I CYCGRG 1 cut(s) 2345
BmgT120I GGNCC 5 cut(s) 795, 879, 914, 1017, 1568
BmiI GGNNCC 4 cut(s) 542, 807, 916, 1309
BmrFI CCNGG 8 cut(s) 123, 294, 498, 553, 579, 677, 705, 799
BmsI GCATC 3 cut(s) 380, 1783, 2237
BpmI CTGGAG 2 cut(s) 1670, 2289
Bpu1102I GCTNAGC 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 1834
BpuEI CTTGAG 2 cut(s) 185, 1839
BpuMI CCSGG 2 cut(s) 294, 579
BsaBI GATNNNNATC 2 cut(s) 321, 1745
BsaHI GRCGYC 1 cut(s) 541
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 217, 552, 810
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 2202, 2232
Bsc4I CCNNNNNNNGG 5 cut(s) 151, 578, 630, 1003, 1617
Bse1I ACTGG 7 cut(s) 409, 532, 614, 976, 1020, 1254, 2306
Bse3DI GCAATG 3 cut(s) 396, 907, 1927
Bse8I GATNNNNATC 2 cut(s) 321, 1745
BseBI CCWGG 6 cut(s) 123, 498, 553, 677, 705, 799
BseDI CCNNGG 3 cut(s) 217, 552, 810
BseGI GGATG 6 cut(s) 371, 475, 548, 1896, 2089, 2327
BseJI GATNNNNATC 2 cut(s) 321, 1745
BseLI CCNNNNNNNGG 5 cut(s) 151, 578, 630, 1003, 1617
BseMI GCAATG 3 cut(s) 396, 907, 1927
BseMII CTCAG 3 cut(s) 322, 428, 795
BseNI ACTGG 7 cut(s) 409, 532, 614, 976, 1020, 1254, 2306
BseRI GAGGAG 1 cut(s) 2223
BseSI GKGCMC 1 cut(s) 1282
BseXI GCAGC 5 cut(s) 569, 1013, 1354, 1376, 1504
BsgI GTGCAG 1 cut(s) 1479
Bsh1236I CGCG 1 cut(s) 1199
BshFI GGCC 6 cut(s) 531, 675, 797, 880, 1569, 1610
BshNI GGYRCC 1 cut(s) 540
BsiHKAI GWGCWC 2 cut(s) 75, 1282
BsiHKCI CYCGRG 1 cut(s) 2345
BsiSI CCGG 4 cut(s) 293, 423, 579, 1103
BslFI GGGAC 2 cut(s) 900, 1234
BslI CCNNNNNNNGG 5 cut(s) 151, 578, 630, 1003, 1617
BsmAI GTCTC 5 cut(s) 30, 161, 775, 1363, 2046
BsmFI GGGAC 2 cut(s) 900, 1234
BsmI GAATGC 2 cut(s) 1160, 2140
BsnI GGCC 6 cut(s) 531, 675, 797, 880, 1569, 1610
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 2345
Bsp119I TTCGAA 1 cut(s) 1834
Bsp1286I GDGCHC 2 cut(s) 75, 1282
Bsp1407I TGTACA 2 cut(s) 666, 1175
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 3 cut(s) 912, 1004, 2124
BspANI GGCC 6 cut(s) 531, 675, 797, 880, 1569, 1610
BspCNI CTCAG 3 cut(s) 321, 429, 794
BspFNI CGCG 1 cut(s) 1199
BspHI TCATGA 1 cut(s) 2254
BspLI GGNNCC 4 cut(s) 542, 807, 916, 1309
BspMAI CTGCAG 2 cut(s) 1366, 1372
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 7 cut(s) 345, 563, 596, 800, 813, 1113, 1260
BspT104I TTCGAA 1 cut(s) 1834
BspT107I GGYRCC 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 3 cut(s) 396, 907, 1927
BsrGI TGTACA 2 cut(s) 666, 1175
BsrI ACTGG 7 cut(s) 409, 532, 614, 976, 1020, 1254, 2306
BssECI CCNNGG 3 cut(s) 217, 552, 810
BssNAI GTATAC 1 cut(s) 224
BssNI GRCGYC 1 cut(s) 541
BssT1I CCWWGG 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 224
Bst2UI CCWGG 6 cut(s) 123, 498, 553, 677, 705, 799
Bst4CI ACNGT 4 cut(s) 32, 70, 831, 1169
Bst6I CTCTTC 1 cut(s) 1499
BstACI GRCGYC 1 cut(s) 541
BstAUI TGTACA 2 cut(s) 666, 1175
BstBI TTCGAA 1 cut(s) 1834
BstC8I GCNNGC 4 cut(s) 763, 1160, 1918, 2172
BstDEI CTNAG 3 cut(s) 308, 437, 781
BstDSI CCRYGG 1 cut(s) 810
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 6 cut(s) 371, 475, 548, 1896, 2089, 2327
BstFNI CGCG 1 cut(s) 1199
BstH2I RGCGCY 2 cut(s) 544, 563
BstHHI GCGC 2 cut(s) 543, 562
BstMAI GTCTC 5 cut(s) 30, 161, 775, 1363, 2046
BstNI CCWGG 6 cut(s) 123, 498, 553, 677, 705, 799
BstNSI RCATGY 4 cut(s) 1053, 1762, 2247, 2403
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 8 cut(s) 121, 292, 496, 551, 577, 675, 703, 797
BstSFI CTRYAG 2 cut(s) 1362, 1368
BstSLI GKGCMC 1 cut(s) 1282
BstUI CGCG 1 cut(s) 1199
BstV1I GCAGC 5 cut(s) 569, 1013, 1354, 1376, 1504
BstX2I RGATCY 4 cut(s) 601, 805, 1252, 1906
BstYI RGATCY 4 cut(s) 601, 805, 1252, 1906
BstZ17I GTATAC 1 cut(s) 224
BsuI GTATCC 4 cut(s) 412, 673, 1816, 2282
BsuRI GGCC 6 cut(s) 531, 675, 797, 880, 1569, 1610
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 6 cut(s) 371, 475, 548, 1896, 2089, 2327
BtsI GCAGTG 2 cut(s) 319, 772
BtsIMutI CAGTG 6 cut(s) 28, 75, 142, 319, 772, 1027
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 4 cut(s) 763, 1160, 1918, 2172
CaiI CAGNNNCTG 1 cut(s) 1026
CciI TCATGA 1 cut(s) 2254
CfoI GCGC 2 cut(s) 543, 562
Cfr13I GGNCC 5 cut(s) 795, 879, 914, 1017, 1568
CseI GACGC 1 cut(s) 2234
Csp6I GTAC 6 cut(s) 99, 119, 667, 1176, 1862, 1879
CspCI CAANNNNNGTGG 2 cut(s) 815, 850
CviQI GTAC 6 cut(s) 99, 119, 667, 1176, 1862, 1879
DdeI CTNAG 3 cut(s) 308, 437, 781
DinI GGCGCC 1 cut(s) 542
DraIII CACNNNGTG 1 cut(s) 459
EaeI YGGCCR 3 cut(s) 529, 673, 1608
Eam1104I CTCTTC 1 cut(s) 1499
EarI CTCTTC 1 cut(s) 1499
Eco130I CCWWGG 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 889
Eco47I GGWCC 2 cut(s) 914, 1017
Eco47III AGCGCT 1 cut(s) 561
Eco57I CTGAAG 2 cut(s) 1480, 1557
Eco88I CYCGRG 1 cut(s) 2345
Eco91I GGTNACC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 795
EcoO65I GGTNACC 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 6 cut(s) 121, 496, 551, 675, 703, 797
EcoRV GATATC 1 cut(s) 889
EcoT14I CCWWGG 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 542
EheI GGCGCC 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 217
FalI AAGNNNNNCTT 4 cut(s) 497, 529, 575, 607
FaqI GGGAC 2 cut(s) 900, 1234
FauNDI CATATG 1 cut(s) 2340
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 558, 1027, 1365, 1368, 1518
FokI GGATG 6 cut(s) 358, 462, 535, 1883, 2096, 2314
Fsp4HI GCNGC 5 cut(s) 558, 1027, 1365, 1368, 1518
FspBI CTAG 6 cut(s) 345, 413, 654, 846, 1256, 1884
GlaI GCGC 2 cut(s) 542, 561
GluI GCNGC 5 cut(s) 558, 1027, 1365, 1368, 1518
GsuI CTGGAG 2 cut(s) 1670, 2289
HaeII RGCGCY 2 cut(s) 544, 563
HaeIII GGCC 6 cut(s) 531, 675, 797, 880, 1569, 1610
HapII CCGG 4 cut(s) 293, 423, 579, 1103
HgaI GACGC 1 cut(s) 2234
HhaI GCGC 2 cut(s) 543, 562
Hin1I GRCGYC 1 cut(s) 541
Hin6I GCGC 2 cut(s) 541, 560
HinP1I GCGC 2 cut(s) 541, 560
HincII GTYRAC 3 cut(s) 363, 1047, 2353
HindII GTYRAC 3 cut(s) 363, 1047, 2353
HindIII AAGCTT 3 cut(s) 1082, 1547, 2259
HinfI GANTC 6 cut(s) 228, 275, 287, 394, 1148, 2251
HpaII CCGG 4 cut(s) 293, 423, 579, 1103
HphI GGTGA 5 cut(s) 580, 945, 950, 1105, 2438
Hpy166II GTNNAC 9 cut(s) 224, 363, 588, 667, 941, 1047, 1195, 1280, 2353
Hpy188III TCNNGA 9 cut(s) 194, 631, 1601, 1649, 1657, 1884, 2045, 2255, 2297
Hpy8I GTNNAC 9 cut(s) 224, 363, 588, 667, 941, 1047, 1195, 1280, 2353
HpyAV CCTTC 5 cut(s) 26, 601, 628, 1721, 2195
HpyCH4III ACNGT 4 cut(s) 32, 70, 831, 1169
HpyCH4IV ACGT 1 cut(s) 854
HpyF3I CTNAG 3 cut(s) 308, 437, 781
HpySE526I ACGT 1 cut(s) 854
Hsp92I GRCGYC 1 cut(s) 541
HspAI GCGC 2 cut(s) 541, 560
KasI GGCGCC 1 cut(s) 540
LmnI GCTCC 2 cut(s) 1313, 2308
Lsp1109I GCAGC 5 cut(s) 569, 1013, 1354, 1376, 1504
LweI GCATC 3 cut(s) 380, 1783, 2237
MaeI CTAG 6 cut(s) 345, 413, 654, 846, 1256, 1884
MaeII ACGT 1 cut(s) 854
MaeIII GTNAC 6 cut(s) 56, 64, 140, 451, 1055, 1070
MboII GAAGA 7 cut(s) 150, 178, 458, 1423, 1483, 1486, 2143
MflI RGATCY 4 cut(s) 601, 805, 1252, 1906
MhlI GDGCHC 2 cut(s) 75, 1282
MlsI TGGCCA 3 cut(s) 531, 675, 1610
MluNI TGGCCA 3 cut(s) 531, 675, 1610
Mly113I GGCGCC 1 cut(s) 541
MmeI TCCRAC 9 cut(s) 315, 783, 840, 1354, 1911, 1983, 2002, 2228, 2458
Mox20I TGGCCA 3 cut(s) 531, 675, 1610
MscI TGGCCA 3 cut(s) 531, 675, 1610
MseI TTAA 5 cut(s) 504, 822, 1338, 1346, 1502
MslI CAYNNNNRTG 4 cut(s) 135, 256, 955, 961
Msp20I TGGCCA 3 cut(s) 531, 675, 1610
MspA1I CMGCKG 1 cut(s) 1367
MspI CCGG 4 cut(s) 293, 423, 579, 1103
MspR9I CCNGG 8 cut(s) 123, 294, 498, 553, 579, 677, 705, 799
Mva1269I GAATGC 2 cut(s) 1160, 2140
MvaI CCWGG 6 cut(s) 123, 498, 553, 677, 705, 799
MvnI CGCG 1 cut(s) 1199
NarI GGCGCC 1 cut(s) 541
NciI CCSGG 2 cut(s) 294, 579
NdeI CATATG 1 cut(s) 2340
NlaIV GGNNCC 4 cut(s) 542, 807, 916, 1309
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 4 cut(s) 1053, 1762, 2247, 2403
NspV TTCGAA 1 cut(s) 1834
PaeR7I CTCGAG 1 cut(s) 2345
PagI TCATGA 1 cut(s) 2254
PciI ACATGT 4 cut(s) 1049, 1758, 2243, 2399
PcsI WCGNNNNNNNCGW 1 cut(s) 2352
PctI GAATGC 2 cut(s) 1160, 2140
PfeI GAWTC 6 cut(s) 228, 275, 287, 394, 1148, 2251
PkrI GCNGC 5 cut(s) 559, 1028, 1366, 1369, 1519
PluTI GGCGCC 1 cut(s) 544
PscI ACATGT 4 cut(s) 1049, 1758, 2243, 2399
PsiI TTATAA 1 cut(s) 1578
Psp6I CCWGG 6 cut(s) 121, 496, 551, 675, 703, 797
PspEI GGTNACC 1 cut(s) 140
PspGI CCWGG 6 cut(s) 121, 496, 551, 675, 703, 797
PspN4I GGNNCC 4 cut(s) 542, 807, 916, 1309
PspPI GGNCC 5 cut(s) 795, 879, 914, 1017, 1568
PspXI VCTCGAGB 1 cut(s) 2345
PstI CTGCAG 2 cut(s) 1366, 1372
PstNI CAGNNNCTG 1 cut(s) 1026
PsuI RGATCY 4 cut(s) 601, 805, 1252, 1906
PvuII CAGCTG 1 cut(s) 1367
RsaI GTAC 6 cut(s) 100, 120, 668, 1177, 1863, 1880
RsaNI GTAC 6 cut(s) 99, 119, 667, 1176, 1862, 1879
RseI CAYNNNNRTG 4 cut(s) 135, 256, 955, 961
SaqAI TTAA 5 cut(s) 504, 822, 1338, 1346, 1502
SatI GCNGC 5 cut(s) 558, 1027, 1365, 1368, 1518
Sau96I GGNCC 5 cut(s) 795, 879, 914, 1017, 1568
ScaI AGTACT 2 cut(s) 1863, 1880
ScrFI CCNGG 8 cut(s) 123, 294, 498, 553, 579, 677, 705, 799
SduI GDGCHC 2 cut(s) 75, 1282
SfaNI GCATC 3 cut(s) 380, 1783, 2237
SfcI CTRYAG 2 cut(s) 1362, 1368
SfoI GGCGCC 1 cut(s) 542
Sfr274I CTCGAG 1 cut(s) 2345
SfuI TTCGAA 1 cut(s) 1834
SinI GGWCC 2 cut(s) 914, 1017
SlaI CTCGAG 1 cut(s) 2345
SmiMI CAYNNNNRTG 4 cut(s) 135, 256, 955, 961
SmlI CTYRAG 3 cut(s) 164, 1854, 2345
SmoI CTYRAG 3 cut(s) 164, 1854, 2345
SsiI CCGC 3 cut(s) 912, 1004, 2124
SspDI GGCGCC 1 cut(s) 540
SspI AATATT 1 cut(s) 1216
SspMI CTAG 6 cut(s) 345, 413, 654, 846, 1256, 1884
StyD4I CCNGG 8 cut(s) 121, 292, 496, 551, 577, 675, 703, 797
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 4 cut(s) 32, 70, 831, 1169
TaiI ACGT 1 cut(s) 857
TaqI TCGA 5 cut(s) 471, 1768, 1834, 2314, 2346
TatI WGTACW 4 cut(s) 666, 1175, 1861, 1878
TfiI GAWTC 6 cut(s) 228, 275, 287, 394, 1148, 2251
Tru1I TTAA 5 cut(s) 504, 822, 1338, 1346, 1502
Tru9I TTAA 5 cut(s) 504, 822, 1338, 1346, 1502
TscAI CASTG 6 cut(s) 35, 75, 142, 319, 772, 1027
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 5 cut(s) 557, 1026, 1364, 1367, 1517
Tsp45I GTSAC 1 cut(s) 451
TspGWI ACGGA 5 cut(s) 364, 636, 1324, 1950, 2320
TspRI CASTG 6 cut(s) 35, 75, 142, 319, 772, 1027
VneI GTGCAC 1 cut(s) 1278
VpaK11BI GGWCC 2 cut(s) 914, 1017
XapI RAATTY 7 cut(s) 199, 871, 1584, 1781, 1977, 2158, 2407
XbaI TCTAGA 1 cut(s) 1883
XceI RCATGY 4 cut(s) 1053, 1762, 2247, 2403
XhoI CTCGAG 1 cut(s) 2345
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 6 cut(s) 345, 413, 654, 846, 1256, 1884
ZrmI AGTACT 2 cut(s) 1863, 1880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.