Rh2DG610200

receptor-like protein kinase At1g67000

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000114
Physical Location & Seq
Reverse (-)
84273094 .. 84318028
44935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG610200.1

Sequence Viewer

Length: 774 bp
ATGACCTATTTGGTTGCAGCTTCTCCAAGTTCACTTTCACCTGGTCCTGTGACTCCTGTCGCAGGTTCTCCGAGTTCACTTTCACCTGGTCCTGTCGCAGGTTCTCCAAGTTCACTTTCACCTGGTCCTGTCGCAGGTTCTCCAAGTTCACTTTCACCTGGTCTTGTCGCAGGGTTAAATGTTTCCCTTGTTTGCAACAGTAGTGTCACTGTTTCCTATCTCACACAATCACAAACTAGTGGACTCCCGTTTAGTCCAGTTTCTACTGGGGCATGCGAAAGTGAGGTTCTGGTTCCGGTTTCCGAAACGGCTGTTTTGGCTCTCGATAACAATCAAACGACGATCCAAGAAGCCATCGATGGGGGTTTCGTACTGGGATTGAAGATTGATAATAGTGCATGCAACAATTGTGAGGCATCAGGGGGAAAGTGTGGGATGAACACTGCTGATGGTGACTTTATGTGCTTTTGCCAAGATCAGCCCTATGCTGCAACCACATGTGGAAGTCGTAAAACAGGTACAAGTTCACCATCACCTGGTTTTGTCACAGGCATTTCAGCTGGTGTTGCTGGGACAGTGGTAGTTGTTTGCTGTCTTACATGCTTATCAAGGAAAAGAATGATCTTCTTCAATAAATTTTCAAGGAATGAGTTTGATATCGAGGAATTCATAAGGAACAATGGATCGCTTACCCCTCAGCGGTATATGAATGTCTTCATATCAAAAGGCAAATCCAGAAAGTTGGACAAAATTGGATTGCCACTTAAAGTTTAA

Protein Analysis

257

Amino Acids

26.33

Weight (kDa)

7.39

Isoelectric Point (pI)

60.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WAK_assoc PF14380 76 - 160 3.5e-17 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 53, 89, 125
AccB7I CCANNNNNTGG 1 cut(s) 536
AciI CCGC 1 cut(s) 700
AclWI GGATC 2 cut(s) 337, 691
AcsI RAATTY 2 cut(s) 635, 665
AfaI GTAC 2 cut(s) 372, 520
AfiI CCNNNNNNNGG 6 cut(s) 62, 98, 134, 360, 536, 699
AflIII ACRYGT 1 cut(s) 497
AgsI TTSAA 3 cut(s) 382, 631, 642
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 5 cut(s) 40, 85, 121, 157, 535
AjuI GAANNNNNNNTTGG 6 cut(s) 19, 51, 100, 132, 136, 168
AluBI AGCT 2 cut(s) 20, 560
AluI AGCT 2 cut(s) 20, 560
AlwI GGATC 2 cut(s) 337, 691
ApeKI GCWGC 2 cut(s) 17, 488
ApoI RAATTY 2 cut(s) 635, 665
Asp700I GAANNNNTTC 1 cut(s) 713
AspS9I GGNCC 3 cut(s) 44, 89, 125
AsuHPI GGTGA 7 cut(s) 30, 75, 111, 147, 464, 519, 525
AvaII GGWCC 3 cut(s) 44, 89, 125
BbsI GAAGAC 1 cut(s) 706
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 2 cut(s) 29, 475
BccI CCATC 4 cut(s) 353, 362, 443, 538
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 5 cut(s) 42, 87, 123, 159, 537
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 1 cut(s) 237
BfuAI ACCTGC 3 cut(s) 53, 89, 125
BisI GCNGC 2 cut(s) 18, 489
BlsI GCNGC 2 cut(s) 19, 490
Bme1390I CCNGG 5 cut(s) 42, 87, 123, 159, 537
Bme18I GGWCC 3 cut(s) 44, 89, 125
BmgT120I GGNCC 3 cut(s) 44, 89, 125
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 5 cut(s) 42, 87, 123, 159, 537
BmrI ACTGGG 2 cut(s) 276, 383
BmsI GCATC 1 cut(s) 425
BmuI ACTGGG 2 cut(s) 276, 383
BoxI GACNNNNGTC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 706
Bpu10I CCTNAGC 1 cut(s) 696
Bsa29I ATCGAT 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 6 cut(s) 62, 98, 134, 360, 536, 699
Bse1I ACTGG 3 cut(s) 257, 271, 378
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 5 cut(s) 42, 87, 123, 159, 537
BseCI ATCGAT 1 cut(s) 357
BseGI GGATG 1 cut(s) 441
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 6 cut(s) 62, 98, 134, 360, 536, 699
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 3 cut(s) 257, 271, 378
BseXI GCAGC 2 cut(s) 29, 475
BseYI CCCAGC 1 cut(s) 569
BshVI ATCGAT 1 cut(s) 357
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 6 cut(s) 62, 98, 134, 360, 536, 699
BsmFI GGGAC 1 cut(s) 586
Bsp143I GATC 4 cut(s) 342, 475, 621, 683
BspACI CCGC 1 cut(s) 700
BspCNI CTCAG 1 cut(s) 709
BspDI ATCGAT 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 294
BspMI ACCTGC 3 cut(s) 53, 89, 125
BspPI GGATC 2 cut(s) 337, 691
BsrI ACTGG 3 cut(s) 257, 271, 378
BssMI GATC 4 cut(s) 342, 475, 621, 683
Bst2UI CCWGG 5 cut(s) 42, 87, 123, 159, 537
Bst4CI ACNGT 3 cut(s) 200, 211, 577
BstC8I GCNNGC 2 cut(s) 274, 400
BstDEI CTNAG 1 cut(s) 696
BstENI CCTNNNNNAGG 3 cut(s) 60, 96, 132
BstF5I GGATG 1 cut(s) 441
BstKTI GATC 4 cut(s) 345, 478, 624, 686
BstMBI GATC 4 cut(s) 342, 475, 621, 683
BstMWI GCNNNNNNNGC 2 cut(s) 317, 566
BstNI CCWGG 5 cut(s) 42, 87, 123, 159, 537
BstNSI RCATGY 4 cut(s) 276, 402, 501, 603
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 5 cut(s) 40, 85, 121, 157, 535
BstV1I GCAGC 2 cut(s) 29, 475
BstV2I GAAGAC 1 cut(s) 706
BstXI CCANNNNNNTGG 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 357
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 1 cut(s) 441
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 3 cut(s) 207, 441, 582
BveI ACCTGC 3 cut(s) 53, 89, 125
Cac8I GCNNGC 2 cut(s) 274, 400
Cfr13I GGNCC 3 cut(s) 44, 89, 125
ClaI ATCGAT 1 cut(s) 357
CsiI ACCWGGT 5 cut(s) 40, 85, 121, 157, 535
Csp6I GTAC 2 cut(s) 371, 519
CviAII CATG 4 cut(s) 273, 399, 498, 600
CviJI RGCY 6 cut(s) 20, 311, 320, 353, 481, 560
CviKI_1 RGCY 6 cut(s) 20, 311, 320, 353, 481, 560
CviQI GTAC 2 cut(s) 371, 519
DdeI CTNAG 1 cut(s) 696
DpnI GATC 4 cut(s) 344, 477, 623, 685
DpnII GATC 4 cut(s) 342, 475, 621, 683
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 3 cut(s) 44, 89, 125
EcoNI CCTNNNNNAGG 3 cut(s) 60, 96, 132
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 5 cut(s) 40, 85, 121, 157, 535
EcoRV GATATC 1 cut(s) 658
FaeI CATG 4 cut(s) 276, 402, 501, 603
FaqI GGGAC 1 cut(s) 586
FatI CATG 4 cut(s) 272, 398, 497, 599
Fnu4HI GCNGC 2 cut(s) 18, 489
FokI GGATG 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 18, 489
FspBI CTAG 1 cut(s) 237
GluI GCNGC 2 cut(s) 18, 489
GsaI CCCAGC 1 cut(s) 573
HapII CCGG 1 cut(s) 296
Hin1II CATG 4 cut(s) 276, 402, 501, 603
HinfI GANTC 2 cut(s) 52, 243
HpaII CCGG 1 cut(s) 296
HphI GGTGA 7 cut(s) 30, 75, 111, 147, 464, 519, 525
Hpy166II GTNNAC 6 cut(s) 32, 77, 113, 149, 242, 527
Hpy188I TCNGA 2 cut(s) 72, 304
Hpy188III TCNNGA 2 cut(s) 323, 735
Hpy8I GTNNAC 6 cut(s) 32, 77, 113, 149, 242, 527
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 3 cut(s) 200, 211, 577
HpyCH4V TGCA 5 cut(s) 17, 195, 398, 402, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 566
HpyF3I CTNAG 1 cut(s) 696
Hsp92II CATG 4 cut(s) 276, 402, 501, 603
Kzo9I GATC 4 cut(s) 342, 475, 621, 683
Lsp1109I GCAGC 2 cut(s) 29, 475
LweI GCATC 1 cut(s) 425
MabI ACCWGGT 5 cut(s) 40, 85, 121, 157, 535
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 49, 205, 452, 544
MalI GATC 4 cut(s) 344, 477, 623, 685
MboI GATC 4 cut(s) 342, 475, 621, 683
MboII GAAGA 4 cut(s) 394, 616, 619, 706
MfeI CAATTG 1 cut(s) 406
MluCI AATT 4 cut(s) 406, 635, 665, 750
MlyI GAGTC 2 cut(s) 46, 237
MmeI TCCRAC 1 cut(s) 723
MnlI CCTC 4 cut(s) 277, 406, 655, 705
MroXI GAANNNNTTC 1 cut(s) 713
MseI TTAA 3 cut(s) 176, 765, 772
MspA1I CMGCKG 2 cut(s) 560, 700
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 5 cut(s) 42, 87, 123, 159, 537
MunI CAATTG 1 cut(s) 406
MvaI CCWGG 5 cut(s) 42, 87, 123, 159, 537
MwoI GCNNNNNNNGC 2 cut(s) 317, 566
NdeII GATC 4 cut(s) 342, 475, 621, 683
NlaIII CATG 4 cut(s) 276, 402, 501, 603
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 4 cut(s) 49, 205, 452, 544
NspI RCATGY 4 cut(s) 276, 402, 501, 603
PaeI GCATGC 2 cut(s) 276, 402
PciI ACATGT 1 cut(s) 497
PdmI GAANNNNTTC 1 cut(s) 713
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 2 cut(s) 19, 490
PleI GAGTC 2 cut(s) 46, 237
PpsI GAGTC 2 cut(s) 46, 237
PscI ACATGT 1 cut(s) 497
PshAI GACNNNNGTC 1 cut(s) 56
Psp6I CCWGG 5 cut(s) 40, 85, 121, 157, 535
PspFI CCCAGC 1 cut(s) 569
PspGI CCWGG 5 cut(s) 40, 85, 121, 157, 535
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 3 cut(s) 44, 89, 125
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 2 cut(s) 372, 520
RsaNI GTAC 2 cut(s) 371, 519
SaqAI TTAA 3 cut(s) 176, 765, 772
SatI GCNGC 2 cut(s) 18, 489
Sau3AI GATC 4 cut(s) 342, 475, 621, 683
Sau96I GGNCC 3 cut(s) 44, 89, 125
SchI GAGTC 2 cut(s) 46, 237
ScrFI CCNGG 5 cut(s) 42, 87, 123, 159, 537
SexAI ACCWGGT 5 cut(s) 40, 85, 121, 157, 535
SfaNI GCATC 1 cut(s) 425
SinI GGWCC 3 cut(s) 44, 89, 125
SpeI ACTAGT 1 cut(s) 236
SphI GCATGC 2 cut(s) 276, 402
Sse9I AATT 4 cut(s) 406, 635, 665, 750
SsiI CCGC 1 cut(s) 700
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 5 cut(s) 40, 85, 121, 157, 535
TaaI ACNGT 3 cut(s) 200, 211, 577
TaqI TCGA 3 cut(s) 324, 357, 660
TasI AATT 4 cut(s) 406, 635, 665, 750
Tru1I TTAA 3 cut(s) 176, 765, 772
Tru9I TTAA 3 cut(s) 176, 765, 772
TscAI CASTG 3 cut(s) 214, 448, 582
TseFI GTSAC 4 cut(s) 49, 205, 452, 544
TseI GCWGC 2 cut(s) 17, 488
Tsp45I GTSAC 4 cut(s) 49, 205, 452, 544
TspDTI ATGAA 4 cut(s) 452, 658, 706, 722
TspRI CASTG 3 cut(s) 214, 448, 582
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 3 cut(s) 44, 89, 125
XagI CCTNNNNNAGG 3 cut(s) 60, 96, 132
XapI RAATTY 2 cut(s) 635, 665
XceI RCATGY 4 cut(s) 276, 402, 501, 603
XmnI GAANNNNTTC 1 cut(s) 713
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.