RLG00000014284

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000114
Physical Location & Seq
Reverse (-)
50353693 .. 50357492
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014284

Sequence Viewer

Length: 1953 bp
ATGAATTCCTTTGTGCTTTTTCAGTCCTCTTTGATTCCTCTGCTTTTGATCACTTCCTTTCTGTCGATCAATTTTCAATTCAGTGTGTGCGCGGATGATGCATATGCTAACTGCGGCCAACCTATTACCTGCGGGAGTGTCAAAAGCAACATCTCTTACCCCTTTTGGGGAGCGAACCGACCCGAATACTGTGGCAAATCTGGGTTCGAGGTCACATGCCAAGACGATGTCCCGATGATCAGCATGCAGAAAATCAATTTCAGAATTCTTGACATGACCAATAGCACTACTACACCAACTCCGACAGTGATAGTTGCAAGGCAGGATTATTGGGGAACTCTCTGTCCTGAGAGTTATATTGACACCAACCTCAACTTCTCTCTGTTTGATTACGCATCTGGGCCTCAAAACGTGTCGTCTTACTATGGATGCAGTTCGACCGCAACTTCAGCTTTGTCAAGGTTAGGATTTAATTTTTCTAGTATCTCGCAGCCATGCAACGCTACCGTCACAGTTTCCTTTCTCACAGAGACGCAAATTGCTAAGCTTTCGGCCTTGGCCTCCTGTCAACCTGTGGTTTCGGTTCCGGTGTCTGCGGCAGCTGCTGATGCGCTTGACAACAATCAAACATCGACTATCCAGGATGCCGTAGATGGTGGTTTTGAATTGAATGTGCAGAATAATGATACTGGTCTTTGCAACAATTGCGTGGCCTCAGCAGGATTTTGTGGGCAAAACACTACTAATGCTCAGTTCATTTGCTATACTTCAAATTCATCAACTCCAATTTCATCAATTCCAGAAATTTCATCAACTCCAAATTCATCCAGTTCATCGTCAGCCAATCTTTTGGGTGTGCAAGTATCGGGAGCATCTTTCTGGGGATCAAACCGACCCGATTACTGTGGCTTCCCGGGGTTCAAGTTGAACTGCAGCAGTGACGCCCCGTCCATCTCAATCCAGGAACAAGAGTTTCAAGTCCTTTCTATCAATCAGAGTCAAAGCAGTTTCACAATTGCTAGAGCCGATTACTGGAACAACGGGATTTTGCCTGAAAATCAAGAAGTAGCCATAAAAAGGCTATCAAAGAAGTCCGGACAAGGACAACAGGAGTTCATGAATGAGTTAAAGCTTATAGCGAAGCTCCAACATACCAACCTTGTTAGACTCTTGGGTTGCTGCACTGAAGCAGAGGAAATGATGTTGATTTATGAGTACAGGCCCAATCGAAGTTTGGACAAATTTCTGTTTGATCCATCCGAAAAGACAAAATTGGACTGGGATAGACGTTTAAGAATTATAGAAGGTATAGCTCAAGGATTGCTTTATATACACAAGTACTCAAGATTAAAAATCATTCATAGGGATCTAAAAGCAAGTAATATTCTATTGGATGGAACAATGAACCCCAAGATTTCTGACTTTGGAATGGCGAAGATTTTTGACATAAATCAAACTGAAGCAAATACTAACAGGGTTGTTGGGACCTACGGCTACATGTCACCTGAGTATGCACGTTATGGTCATTTCTCTGAGAAATCGGATGTCTTTAGTTTTGGAGTTTTGTTGTTGGAGATTGTAAGTGGAAAGAAAAATGCTAGTTTCTATCGTTTTGAATGTTCATTGACTCTCGCTGGATGGGTATGGGACCTATGGAAAGAAGGAAGGGGAATAGAGGTGATTGATGCGTCAATAAGGGAAACATTACAGGCTCATGAGGCTTTAAGGTGTATCAATATAGGACTTTTGTGCGTTCAAGAATCTGCAGCTGATCGACCTGCAATGGCGTCAGTAATTCACATGTTGCAGGGAAATGAAGCTGCCTCTCTTCCACCTACCAAAGCACCTGCCTTTTCAACACAGACGAATTTCAGTACTCTTGGTCCTTCTTCTCAAACACCTACCAATTATTCAAACAATGCACTCACGATTAGTTTGCCAGAAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

651

Amino Acids

71.22

Weight (kDa)

5.17

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 38 - 97 8e-13 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 172 - 258 8.5e-15 Wall-associated receptor kinase C-terminal
GUB_WAK_bind PF13947 293 - 341 1.2e-10 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 351 - 601 2.3e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 352 - 531 4.2e-41 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1855
Acc36I ACCTGC 3 cut(s) 137, 1786, 1855
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 1094
AciI CCGC 5 cut(s) 92, 114, 132, 441, 596
AclWI GGATC 3 cut(s) 892, 1247, 1374
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 7 cut(s) 4, 264, 772, 804, 820, 1241, 1867
AcuI CTGAAG 3 cut(s) 432, 1206, 1479
AcyI GRCGYC 2 cut(s) 942, 1787
AfaI GTAC 3 cut(s) 1217, 1340, 1876
AfiI CCNNNNNNNGG 4 cut(s) 166, 167, 1032, 1077
AflIII ACRYGT 3 cut(s) 411, 1497, 1800
AhdI GACNNNNNGTC 1 cut(s) 946
AjnI CCWGG 2 cut(s) 639, 960
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 9 cut(s) 452, 547, 602, 1132, 1144, 1313, 1769, 1820, 1946
AluI AGCT 9 cut(s) 452, 547, 602, 1132, 1144, 1313, 1769, 1820, 1946
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 3 cut(s) 892, 1247, 1374
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 913
Aor13HI TCCGGA 1 cut(s) 1094
AoxI GGCC 6 cut(s) 115, 401, 552, 558, 711, 1220
ApeKI GCWGC 7 cut(s) 490, 599, 602, 933, 1179, 1766, 1820
ApoI RAATTY 7 cut(s) 4, 264, 772, 804, 820, 1241, 1867
AspLEI GCGC 2 cut(s) 92, 613
AspS9I GGNCC 5 cut(s) 401, 1221, 1485, 1648, 1883
AsuC2I CCSGG 2 cut(s) 914, 915
AsuHPI GGTGA 2 cut(s) 1494, 1690
AvaI CYCGRG 1 cut(s) 913
AvaII GGWCC 3 cut(s) 1485, 1648, 1883
BbvCI CCTCAGC 1 cut(s) 715
BbvI GCAGC 7 cut(s) 502, 589, 611, 945, 1166, 1778, 1807
BccI CCATC 5 cut(s) 647, 959, 1264, 1388, 1632
BceAI ACGGC 2 cut(s) 632, 1507
BcgI CGANNNNNNTGC 2 cut(s) 1918, 1952
BciT130I CCWGG 2 cut(s) 641, 962
BclI TGATCA 2 cut(s) 48, 237
BcnI CCSGG 2 cut(s) 914, 915
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 3 cut(s) 480, 1020, 1599
BfmI CTRYAG 2 cut(s) 931, 1764
BfuAI ACCTGC 3 cut(s) 137, 1786, 1855
BisI GCNGC 9 cut(s) 115, 491, 597, 600, 603, 934, 1180, 1767, 1821
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 9 cut(s) 116, 492, 598, 601, 604, 935, 1181, 1768, 1822
BmcAI AGTACT 2 cut(s) 1340, 1876
Bme1390I CCNGG 4 cut(s) 641, 914, 915, 962
Bme18I GGWCC 3 cut(s) 1485, 1648, 1883
BmeRI GACNNNNNGTC 1 cut(s) 946
BmeT110I CYCGRG 1 cut(s) 913
BmgT120I GGNCC 5 cut(s) 401, 1221, 1485, 1648, 1883
BmiI GGNNCC 3 cut(s) 585, 1486, 1649
BmrFI CCNGG 4 cut(s) 641, 914, 915, 962
BmrI ACTGGG 1 cut(s) 1288
BmsI GCATC 7 cut(s) 88, 404, 419, 598, 634, 881, 1675
BmuI ACTGGG 1 cut(s) 1288
Bpu10I CCTNAGC 1 cut(s) 715
Bpu1102I GCTNAGC 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 1299, 1327
BpuMI CCSGG 2 cut(s) 914, 915
BsaHI GRCGYC 2 cut(s) 942, 1787
BsaJI CCNNGG 3 cut(s) 555, 913, 914
BsaWI WCCGGW 2 cut(s) 586, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 167, 1032, 1077
Bse1I ACTGG 4 cut(s) 694, 828, 1037, 1283
Bse3DI GCAATG 1 cut(s) 1788
BseAI TCCGGA 1 cut(s) 1094
BseBI CCWGG 2 cut(s) 641, 962
BseDI CCNNGG 3 cut(s) 555, 913, 914
BseGI GGATG 8 cut(s) 100, 434, 649, 824, 1256, 1399, 1549, 1643
BseLI CCNNNNNNNGG 4 cut(s) 166, 167, 1032, 1077
BseMI GCAATG 1 cut(s) 1788
BseMII CTCAG 5 cut(s) 339, 729, 764, 1497, 1524
BseNI ACTGG 4 cut(s) 694, 828, 1037, 1283
BseXI GCAGC 7 cut(s) 502, 589, 611, 945, 1166, 1778, 1807
BsgI GTGCAG 2 cut(s) 695, 1165
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 441
BshFI GGCC 6 cut(s) 117, 403, 554, 560, 713, 1222
BsiEI CGRYCG 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 913
BsiSI CCGG 3 cut(s) 587, 914, 1095
BslFI GGGAC 3 cut(s) 215, 1498, 1661
BslI CCNNNNNNNGG 4 cut(s) 166, 167, 1032, 1077
BsmAI GTCTC 1 cut(s) 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 3 cut(s) 215, 1498, 1661
BsnI GGCC 6 cut(s) 117, 403, 554, 560, 713, 1222
BsoBI CYCGRG 1 cut(s) 913
Bsp13I TCCGGA 1 cut(s) 1094
Bsp143I GATC 7 cut(s) 48, 66, 237, 884, 1252, 1366, 1771
Bsp1720I GCTNAGC 1 cut(s) 543
BspACI CCGC 5 cut(s) 92, 114, 132, 441, 596
BspANI GGCC 6 cut(s) 117, 403, 554, 560, 713, 1222
BspCNI CTCAG 5 cut(s) 340, 728, 763, 1498, 1525
BspEI TCCGGA 1 cut(s) 1094
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 2 cut(s) 1116, 1714
BspLI GGNNCC 3 cut(s) 585, 1486, 1649
BspMAI CTGCAG 2 cut(s) 935, 1768
BspMI ACCTGC 3 cut(s) 137, 1786, 1855
BspPI GGATC 3 cut(s) 892, 1247, 1374
BsrDI GCAATG 1 cut(s) 1788
BsrI ACTGG 4 cut(s) 694, 828, 1037, 1283
BssECI CCNNGG 3 cut(s) 555, 913, 914
BssMI GATC 7 cut(s) 48, 66, 237, 884, 1252, 1366, 1771
BssNI GRCGYC 2 cut(s) 942, 1787
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 641, 962
Bst4CI ACNGT 5 cut(s) 191, 307, 508, 514, 905
Bst6I CTCTTC 1 cut(s) 1833
BstACI GRCGYC 2 cut(s) 942, 1787
BstAPI GCANNNNNTGC 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 6 cut(s) 348, 543, 715, 750, 1506, 1533
BstF5I GGATG 8 cut(s) 100, 434, 649, 824, 1256, 1399, 1549, 1643
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 2 cut(s) 92, 613
BstKTI GATC 7 cut(s) 51, 69, 240, 887, 1255, 1369, 1774
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 7 cut(s) 48, 66, 237, 884, 1252, 1366, 1771
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 6 cut(s) 98, 449, 602, 608, 705, 1718
BstNI CCWGG 2 cut(s) 641, 962
BstNSI RCATGY 4 cut(s) 219, 247, 1501, 1804
BstSCI CCNGG 4 cut(s) 639, 912, 913, 960
BstSFI CTRYAG 2 cut(s) 931, 1764
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 7 cut(s) 502, 589, 611, 945, 1166, 1778, 1807
BstX2I RGATCY 1 cut(s) 1366
BstXI CCANNNNNNTGG 1 cut(s) 850
BstYI RGATCY 1 cut(s) 1366
BsuRI GGCC 6 cut(s) 117, 403, 554, 560, 713, 1222
BtsCI GGATG 8 cut(s) 100, 434, 649, 824, 1256, 1399, 1549, 1643
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 4 cut(s) 88, 312, 943, 1182
BveI ACCTGC 3 cut(s) 137, 1786, 1855
Cac8I GCNNGC 1 cut(s) 245
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 2 cut(s) 1116, 1714
CfoI GCGC 2 cut(s) 92, 613
Cfr13I GGNCC 5 cut(s) 401, 1221, 1485, 1648, 1883
Cfr9I CCCGGG 1 cut(s) 913
CseI GACGC 4 cut(s) 541, 950, 1677, 1776
Csp6I GTAC 3 cut(s) 1216, 1339, 1875
CviAII CATG 8 cut(s) 216, 244, 274, 495, 1117, 1498, 1715, 1801
CviQI GTAC 3 cut(s) 1216, 1339, 1875
DdeI CTNAG 6 cut(s) 348, 543, 715, 750, 1506, 1533
DpnI GATC 7 cut(s) 50, 68, 239, 886, 1254, 1368, 1773
DpnII GATC 7 cut(s) 48, 66, 237, 884, 1252, 1366, 1771
DriI GACNNNNNGTC 1 cut(s) 946
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 1833
Eam1105I GACNNNNNGTC 1 cut(s) 946
EarI CTCTTC 1 cut(s) 1833
Eco130I CCWWGG 1 cut(s) 555
Eco47I GGWCC 3 cut(s) 1485, 1648, 1883
Eco57I CTGAAG 3 cut(s) 432, 1206, 1479
Eco88I CYCGRG 1 cut(s) 913
EcoO109I RGGNCCY 2 cut(s) 1485, 1648
EcoRI GAATTC 2 cut(s) 4, 264
EcoRII CCWGG 2 cut(s) 639, 960
EcoT14I CCWWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 8 cut(s) 219, 247, 277, 498, 1120, 1501, 1718, 1804
FalI AAGNNNNNCTT 2 cut(s) 1308, 1340
FaqI GGGAC 3 cut(s) 215, 1498, 1661
FatI CATG 8 cut(s) 215, 243, 273, 494, 1116, 1497, 1714, 1800
FauI CCCGC 1 cut(s) 125
FauNDI CATATG 1 cut(s) 103
FbaI TGATCA 2 cut(s) 48, 237
Fnu4HI GCNGC 9 cut(s) 115, 491, 597, 600, 603, 934, 1180, 1767, 1821
FokI GGATG 8 cut(s) 107, 441, 656, 811, 1243, 1406, 1556, 1650
Fsp4HI GCNGC 9 cut(s) 115, 491, 597, 600, 603, 934, 1180, 1767, 1821
FspBI CTAG 3 cut(s) 480, 1020, 1599
GlaI GCGC 2 cut(s) 91, 612
GluI GCNGC 9 cut(s) 115, 491, 597, 600, 603, 934, 1180, 1767, 1821
HaeIII GGCC 6 cut(s) 117, 403, 554, 560, 713, 1222
HapII CCGG 3 cut(s) 587, 914, 1095
HgaI GACGC 4 cut(s) 541, 950, 1677, 1776
HhaI GCGC 2 cut(s) 92, 613
Hin1I GRCGYC 2 cut(s) 942, 1787
Hin1II CATG 8 cut(s) 219, 247, 277, 498, 1120, 1501, 1718, 1804
Hin6I GCGC 2 cut(s) 90, 611
HinP1I GCGC 2 cut(s) 90, 611
HincII GTYRAC 1 cut(s) 569
HindII GTYRAC 1 cut(s) 569
HindIII AAGCTT 2 cut(s) 545, 1130
HinfI GANTC 5 cut(s) 34, 997, 1167, 1627, 1760
HpaII CCGG 3 cut(s) 587, 914, 1095
HphI GGTGA 2 cut(s) 1494, 1690
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 7 cut(s) 263, 303, 996, 1261, 1420, 1534, 1543
Hpy8I GTNNAC 1 cut(s) 569
HpyAV CCTTC 4 cut(s) 1298, 1655, 1659, 1896
HpyCH4III ACNGT 5 cut(s) 191, 307, 508, 514, 905
HpyCH4IV ACGT 3 cut(s) 411, 1288, 1516
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 449, 602, 608, 705, 1718
HpyF3I CTNAG 6 cut(s) 348, 543, 715, 750, 1506, 1533
HpySE526I ACGT 3 cut(s) 411, 1288, 1516
Hsp92I GRCGYC 2 cut(s) 942, 1787
Hsp92II CATG 8 cut(s) 219, 247, 277, 498, 1120, 1501, 1718, 1804
HspAI GCGC 2 cut(s) 90, 611
Kpn2I TCCGGA 1 cut(s) 1094
Ksp22I TGATCA 2 cut(s) 48, 237
Kzo9I GATC 7 cut(s) 48, 66, 237, 884, 1252, 1366, 1771
LmnI GCTCC 3 cut(s) 170, 869, 1149
Lsp1109I GCAGC 7 cut(s) 502, 589, 611, 945, 1166, 1778, 1807
LweI GCATC 7 cut(s) 88, 404, 419, 598, 634, 881, 1675
MaeI CTAG 3 cut(s) 480, 1020, 1599
MaeII ACGT 3 cut(s) 411, 1288, 1516
MaeIII GTNAC 4 cut(s) 211, 508, 938, 1500
MalI GATC 7 cut(s) 50, 68, 239, 886, 1254, 1368, 1773
MboI GATC 7 cut(s) 48, 66, 237, 884, 1252, 1366, 1771
MboII GAAGA 3 cut(s) 1447, 1820, 1881
MfeI CAATTG 2 cut(s) 703, 1014
MflI RGATCY 1 cut(s) 1366
MlyI GAGTC 3 cut(s) 1006, 1161, 1621
MmeI TCCRAC 3 cut(s) 326, 1171, 1551
Mph1103I ATGCAT 1 cut(s) 103
MroI TCCGGA 1 cut(s) 1094
MseI TTAA 5 cut(s) 471, 1127, 1292, 1349, 1724
MspA1I CMGCKG 2 cut(s) 602, 1769
MspI CCGG 3 cut(s) 587, 914, 1095
MspR9I CCNGG 4 cut(s) 641, 914, 915, 962
MunI CAATTG 2 cut(s) 703, 1014
MvaI CCWGG 2 cut(s) 641, 962
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 6 cut(s) 98, 449, 602, 608, 705, 1718
NciI CCSGG 2 cut(s) 914, 915
NdeI CATATG 1 cut(s) 103
NdeII GATC 7 cut(s) 48, 66, 237, 884, 1252, 1366, 1771
NlaIII CATG 8 cut(s) 219, 247, 277, 498, 1120, 1501, 1718, 1804
NlaIV GGNNCC 3 cut(s) 585, 1486, 1649
NmuCI GTSAC 4 cut(s) 211, 508, 938, 1500
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 4 cut(s) 219, 247, 1501, 1804
PaeI GCATGC 1 cut(s) 247
PagI TCATGA 2 cut(s) 1116, 1714
PaqCI CACCTGC 1 cut(s) 1855
PciI ACATGT 2 cut(s) 1497, 1800
PfeI GAWTC 2 cut(s) 34, 1760
PflFI GACNNNGTC 1 cut(s) 227
PfoI TCCNGGA 2 cut(s) 639, 960
PkrI GCNGC 9 cut(s) 116, 492, 598, 601, 604, 935, 1181, 1768, 1822
PleI GAGTC 3 cut(s) 1005, 1161, 1621
PpsI GAGTC 3 cut(s) 1005, 1161, 1621
PpuMI RGGWCCY 2 cut(s) 1485, 1648
PscI ACATGT 2 cut(s) 1497, 1800
Psp5II RGGWCCY 2 cut(s) 1485, 1648
Psp6I CCWGG 2 cut(s) 639, 960
PspGI CCWGG 2 cut(s) 639, 960
PspN4I GGNNCC 3 cut(s) 585, 1486, 1649
PspPI GGNCC 5 cut(s) 401, 1221, 1485, 1648, 1883
PspPPI RGGWCCY 2 cut(s) 1485, 1648
PstI CTGCAG 2 cut(s) 935, 1768
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 1366
PsyI GACNNNGTC 1 cut(s) 227
PvuII CAGCTG 2 cut(s) 602, 1769
RsaI GTAC 3 cut(s) 1217, 1340, 1876
RsaNI GTAC 3 cut(s) 1216, 1339, 1875
SaqAI TTAA 5 cut(s) 471, 1127, 1292, 1349, 1724
SatI GCNGC 9 cut(s) 115, 491, 597, 600, 603, 934, 1180, 1767, 1821
Sau3AI GATC 7 cut(s) 48, 66, 237, 884, 1252, 1366, 1771
Sau96I GGNCC 5 cut(s) 401, 1221, 1485, 1648, 1883
ScaI AGTACT 2 cut(s) 1340, 1876
SchI GAGTC 3 cut(s) 1006, 1161, 1621
ScrFI CCNGG 4 cut(s) 641, 914, 915, 962
SfaNI GCATC 7 cut(s) 88, 404, 419, 598, 634, 881, 1675
SfcI CTRYAG 2 cut(s) 931, 1764
SinI GGWCC 3 cut(s) 1485, 1648, 1883
SmaI CCCGGG 1 cut(s) 915
SmlI CTYRAG 2 cut(s) 1314, 1342
SmoI CTYRAG 2 cut(s) 1314, 1342
SphI GCATGC 1 cut(s) 247
SsiI CCGC 5 cut(s) 92, 114, 132, 441, 596
SspI AATATT 1 cut(s) 1384
SspMI CTAG 3 cut(s) 480, 1020, 1599
StyD4I CCNGG 4 cut(s) 639, 912, 913, 960
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 5 cut(s) 191, 307, 508, 514, 905
TaiI ACGT 3 cut(s) 414, 1291, 1519
TaqI TCGA 7 cut(s) 65, 207, 437, 632, 1228, 1774, 1948
TatI WGTACW 3 cut(s) 1215, 1338, 1874
TauI GCSGC 2 cut(s) 117, 599
TfiI GAWTC 2 cut(s) 34, 1760
Tru1I TTAA 5 cut(s) 471, 1127, 1292, 1349, 1724
Tru9I TTAA 5 cut(s) 471, 1127, 1292, 1349, 1724
TscAI CASTG 4 cut(s) 88, 312, 943, 1189
TseFI GTSAC 4 cut(s) 211, 508, 938, 1500
TseI GCWGC 7 cut(s) 490, 599, 602, 933, 1179, 1766, 1820
Tsp45I GTSAC 4 cut(s) 211, 508, 938, 1500
TspMI CCCGGG 1 cut(s) 913
TspRI CASTG 4 cut(s) 88, 312, 943, 1189
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 3 cut(s) 1485, 1648, 1883
XapI RAATTY 7 cut(s) 4, 264, 772, 804, 820, 1241, 1867
XceI RCATGY 4 cut(s) 219, 247, 1501, 1804
XcmI CCANNNNNNNNNTGG 1 cut(s) 1231
XmaI CCCGGG 1 cut(s) 913
XspI CTAG 3 cut(s) 480, 1020, 1599
ZrmI AGTACT 2 cut(s) 1340, 1876
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.