RchiOBHm_Chr1g0329371

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000114
Physical Location & Seq
Forward (+)
18960845 .. 18964047
3203 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55869

Sequence Viewer

Length: 2115 bp
ATGGCGTGGCTCTTGTGTTACCGTGTAACACTGCTCTTATCGCACATCCTGTCATTCTGTACCTGCCAATACAAAATAGTACCAGGACAGTATATCACTGGTAACCACACTTTGGTTTCTTCCCTTGGGACCTTTTCATTGGGCTTCTTCAATCCTAACGAAAATTCTACTAAATACTTCCTTGGCATACGATTCGACACATTCCCAAATACTGCATTAGTATGGGTTGCTAATAGAGAATCTCCACTTGATTCTCCAGGTTTCTTTATGATCAGTGGGGATGGAAATCTTGTGGTGTTGGATCAGACTAGAAATCTTGTCTGGTCAACTAATGCATCAGTATCTACTTCTGCAGTGAATCACACGACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACTTTGTGGCAGAGCTTTGATCATCCCTCTGATACTATGTTGCCTGGCATTAAAATTAGCTTGAACAAAACGACTGGCCAACAAAGGCGCCTTACATCCTGGGCTGCCCTTGATGATCCACAACCCGGAAAGTTCACCTTCGGAATAGATCCTGAAGTACCAATTCAAGCCTTTACCTGGAAGGAAACTACTCTGTATTGGACAAGTTCTATGTACATCGGCAAGGATACAAGAACAGATTTTCAAAATCCAGGTGGAACCGCGTCTTTCCTTACTCACAACTTTGATGTTGATGAGGTTTATCTTGCTTACAGTGTCTCAGATAGCTCAGTAAAATTGAGGGTCTGGTTGAATCCTACATGGCAATTTATACTGCTGCTGTGGCAGGGTTCTAGTAAAACGTGGTTGGAACAGGGGAATTTACCTGCTGATAACTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGTGAACCACTGTCATCATCATGCAAGTGTTTGATTGGTTTTACAGCCAAGTTTCCTAACCAATCAGCTGTGGGAAATTGGTCCAGTGGCTGCGTTAGGGAAAAGATGTTAACATGTGGTAATGGCATACAAGGTAACTTTTCAAAGCTTGAAAATGTGAGACTACCGGATCATTCTGTTCTGTTAGAGAATAGGAGTATGAGTCAGTGTCACTTTGATTGTCAGCAGAACTGTTCTTGCACAGCTTATGAGCATGTAAATGACACAGACGGAAGTAATAGTGGGAAATGTTTGGCATGGTTTGGCGAATTACTGGATCTAGTAGAGAATCACTACAATTCTGAACGTGATATGTATATTCGTCTACAAAACAACTTCTCTGAAGTGAACAAACTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGAATTTTGCCAGAAAATCAAGAAGTGGCCATAAAGAGGCTATCAAAGAAGTCTGGGCAAGGACATCATGAGTTCAAGAATGAGTTGAAACTTCTAGACAAACTCCAGCATACCAATCTTGTAAGGTTATTAGGTTGCTGTATGGAAGAAGATGAAATGATATTGATCTATGAGTACATGTCTAATCGAAGCTTGGACAAATTTTTATTTGATTCTTTTGAAAAGACGAAGTTGGATTGGGATATACGCTTTCAAATTATACAAGGTGTTGCTCAAGGAGTATTATATATCCACAAATACTCTAGATTGAAAATCATCCACAGAGATCTAAAAGCAAGTAATGTTTTGTTGGATGGAACAATGAACCCCAAAGTGTCTGACTTTGGAATGGCGAGAATTTTTGATATAAATCAAATTGAAGCAAATACCAACAAGGTTGTTGGGACATATTTCGGAGTACTGTTGTTAGAGATTGTAAGTGGAAAGAAGAATGCTTATTTTTATCACTTTGAAAATTCACTGACACTTGCTCAATGGGTAATTGACGTATCAATAAGGGAAACATGCCGGATTCATGAAGCTTTGAGGTGTATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGACCAACAATGTCATCCGTGATTCATATGCTTGAGGCCGATGAAGCTACTTCATTTCCACCCTCCAAAGAACCTGCTTTTTCAACACGTAGAAATTCAAGTCCTGTTACCACTTATTCTAACAATGTAGTTACTATTACTTTGCCAGAACCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

704

Amino Acids

79.37

Weight (kDa)

5.91

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 73 - 173 4.6e-31 D-mannose binding lectin
S_locus_glycop PF00954 206 - 316 2.7e-15 S-locus glycoprotein domain
PAN_2 PF08276 344 - 406 4.6e-12 PAN-like domain
Pkinase PF00069 426 - 590 5.4e-34 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 428 - 576 5.6e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1320
Acc36I ACCTGC 3 cut(s) 71, 850, 2038
AccB1I GGYRCC 1 cut(s) 504
AccB7I CCANNNNNTGG 1 cut(s) 112
AccI GTMKAC 1 cut(s) 1261
AccII CGCG 1 cut(s) 680
AciI CCGC 2 cut(s) 678, 873
AclWI GGATC 5 cut(s) 309, 527, 560, 1074, 1221
AcoI YGGCCR 2 cut(s) 493, 1350
AcsI RAATTY 7 cut(s) 163, 835, 1326, 1523, 1719, 1837, 2050
AcuI CTGAAG 2 cut(s) 591, 1299
AcyI GRCGYC 1 cut(s) 505
AdeI CACNNNGTG 1 cut(s) 423
AfaI GTAC 6 cut(s) 61, 81, 576, 632, 1499, 1782
AfiI CCNNNNNNNGG 4 cut(s) 112, 542, 594, 1359
AflIII ACRYGT 3 cut(s) 1010, 1500, 2042
AjnI CCWGG 6 cut(s) 82, 256, 460, 515, 593, 667
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
Alw26I GTCTC 2 cut(s) 739, 1051
AlwI GGATC 5 cut(s) 309, 527, 560, 1074, 1221
AlwNI CAGNNNCTG 1 cut(s) 987
AoxI GGCC 4 cut(s) 493, 1309, 1350, 1992
ApeKI GCWGC 3 cut(s) 521, 793, 987
ApoI RAATTY 7 cut(s) 163, 835, 1326, 1523, 1719, 1837, 2050
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 4 cut(s) 129, 875, 978, 1310
AsuC2I CCSGG 1 cut(s) 543
AsuHPI GGTGA 2 cut(s) 544, 911
AvaII GGWCC 3 cut(s) 129, 875, 978
BalI TGGCCA 2 cut(s) 495, 1352
BanI GGYRCC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 508, 780, 974
BccI CCATC 2 cut(s) 275, 1670
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 6 cut(s) 84, 258, 462, 517, 595, 669
BciVI GTATCC 3 cut(s) 376, 637, 1925
BclI TGATCA 2 cut(s) 270, 436
BcnI CCSGG 1 cut(s) 543
BcoDI GTCTC 2 cut(s) 739, 1051
BfaI CTAG 6 cut(s) 309, 377, 810, 1217, 1418, 1626
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 508
BfuAI ACCTGC 3 cut(s) 71, 850, 2038
BfuI GTATCC 3 cut(s) 376, 637, 1925
BglII AGATCT 1 cut(s) 1648
BisI GCNGC 3 cut(s) 522, 794, 988
BlsI GCNGC 3 cut(s) 523, 795, 989
BmcAI AGTACT 1 cut(s) 1782
Bme1390I CCNGG 7 cut(s) 84, 258, 462, 517, 543, 595, 669
Bme18I GGWCC 3 cut(s) 129, 875, 978
BmgT120I GGNCC 4 cut(s) 129, 875, 978, 1310
BmiI GGNNCC 4 cut(s) 130, 506, 676, 877
BmrFI CCNGG 7 cut(s) 84, 258, 462, 517, 543, 595, 669
BmsI GCATC 1 cut(s) 344
BpmI CTGGAG 3 cut(s) 240, 1412, 1932
BpuEI CTTGAG 2 cut(s) 1581, 2009
BpuMI CCSGG 1 cut(s) 543
BsaAI YACGTR 1 cut(s) 2045
BsaBI GATNNNNATC 3 cut(s) 285, 1487, 1731
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 3 cut(s) 124, 181, 516
BsaWI WCCGGW 2 cut(s) 386, 1063
BsaXI ACNNNNNCTCC 2 cut(s) 1084, 1114
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 542, 594, 1359
Bse1I ACTGG 5 cut(s) 103, 373, 496, 981, 1215
Bse3DI GCAATG 1 cut(s) 868
Bse8I GATNNNNATC 3 cut(s) 285, 1487, 1731
BseBI CCWGG 6 cut(s) 84, 258, 462, 517, 595, 669
BseDI CCNNGG 3 cut(s) 124, 181, 516
BseGI GGATG 7 cut(s) 45, 286, 439, 512, 1638, 1681, 1970
BseJI GATNNNNATC 3 cut(s) 285, 1487, 1731
BseLI CCNNNNNNNGG 4 cut(s) 112, 542, 594, 1359
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 392, 750, 759
BseNI ACTGG 5 cut(s) 103, 373, 496, 981, 1215
BseXI GCAGC 3 cut(s) 508, 780, 974
Bsh1236I CGCG 1 cut(s) 680
BshFI GGCC 4 cut(s) 495, 1311, 1352, 1994
BshNI GGYRCC 1 cut(s) 504
BsiSI CCGG 4 cut(s) 387, 543, 1064, 1891
BslFI GGGAC 3 cut(s) 142, 861, 1780
BslI CCNNNNNNNGG 4 cut(s) 112, 542, 594, 1359
BsmAI GTCTC 2 cut(s) 739, 1051
BsmFI GGGAC 3 cut(s) 142, 861, 1780
BsmI GAATGC 1 cut(s) 1819
BsnI GGCC 4 cut(s) 495, 1311, 1352, 1994
Bsp1407I TGTACA 1 cut(s) 630
BspACI CCGC 2 cut(s) 678, 873
BspANI GGCC 4 cut(s) 495, 1311, 1352, 1994
BspCNI CTCAG 3 cut(s) 393, 749, 758
BspFNI CGCG 1 cut(s) 680
BspHI TCATGA 2 cut(s) 1390, 1897
BspLI GGNNCC 4 cut(s) 130, 506, 676, 877
BspMAI CTGCAG 1 cut(s) 355
BspMI ACCTGC 3 cut(s) 71, 850, 2038
BspPI GGATC 5 cut(s) 309, 527, 560, 1074, 1221
BspT107I GGYRCC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 868
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 5 cut(s) 103, 373, 496, 981, 1215
BssECI CCNNGG 3 cut(s) 124, 181, 516
BssNI GRCGYC 1 cut(s) 505
BssT1I CCWWGG 2 cut(s) 124, 181
Bst2UI CCWGG 6 cut(s) 84, 258, 462, 517, 595, 669
Bst4CI ACNGT 7 cut(s) 23, 90, 731, 854, 909, 1130, 1785
BstACI GRCGYC 1 cut(s) 505
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 2045
BstDEI CTNAG 3 cut(s) 401, 736, 745
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 7 cut(s) 45, 286, 439, 512, 1638, 1681, 1970
BstFNI CGCG 1 cut(s) 680
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 1 cut(s) 507
BstMAI GTCTC 2 cut(s) 739, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 40, 799, 2000
BstNI CCWGG 6 cut(s) 84, 258, 462, 517, 595, 669
BstNSI RCATGY 4 cut(s) 1014, 1154, 1504, 1890
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 7 cut(s) 82, 256, 460, 515, 541, 593, 667
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 680
BstV1I GCAGC 3 cut(s) 508, 780, 974
BstX2I RGATCY 3 cut(s) 565, 1213, 1648
BstYI RGATCY 3 cut(s) 565, 1213, 1648
BsuI GTATCC 3 cut(s) 376, 637, 1925
BsuRI GGCC 4 cut(s) 495, 1311, 1352, 1994
BtsCI GGATG 7 cut(s) 45, 286, 439, 512, 1638, 1681, 1970
BtsI GCAGTG 2 cut(s) 29, 360
BtsIMutI CAGTG 9 cut(s) 29, 96, 280, 360, 736, 905, 988, 1109, 1841
BveI ACCTGC 3 cut(s) 71, 850, 2038
CaiI CAGNNNCTG 1 cut(s) 987
CciI TCATGA 2 cut(s) 1390, 1897
CfoI GCGC 1 cut(s) 507
Cfr13I GGNCC 4 cut(s) 129, 875, 978, 1310
CseI GACGC 1 cut(s) 669
Csp6I GTAC 6 cut(s) 60, 80, 575, 631, 1498, 1781
CviQI GTAC 6 cut(s) 60, 80, 575, 631, 1498, 1781
DdeI CTNAG 3 cut(s) 401, 736, 745
DinI GGCGCC 1 cut(s) 506
DraIII CACNNNGTG 1 cut(s) 423
EaeI YGGCCR 2 cut(s) 493, 1350
Eco130I CCWWGG 2 cut(s) 124, 181
Eco47I GGWCC 3 cut(s) 129, 875, 978
Eco57I CTGAAG 2 cut(s) 591, 1299
Eco91I GGTNACC 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 129
EcoO65I GGTNACC 1 cut(s) 101
EcoRII CCWGG 6 cut(s) 82, 256, 460, 515, 593, 667
EcoT14I CCWWGG 2 cut(s) 124, 181
EcoT22I ATGCAT 1 cut(s) 337
EgeI GGCGCC 1 cut(s) 506
EheI GGCGCC 1 cut(s) 506
ErhI CCWWGG 2 cut(s) 124, 181
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 3 cut(s) 142, 861, 1780
FauNDI CATATG 1 cut(s) 1983
FbaI TGATCA 2 cut(s) 270, 436
FblI GTMKAC 1 cut(s) 1261
Fnu4HI GCNGC 3 cut(s) 522, 794, 988
FokI GGATG 7 cut(s) 32, 293, 426, 499, 1625, 1688, 1957
Fsp4HI GCNGC 3 cut(s) 522, 794, 988
FspBI CTAG 6 cut(s) 309, 377, 810, 1217, 1418, 1626
GlaI GCGC 1 cut(s) 506
GluI GCNGC 3 cut(s) 522, 794, 988
GsuI CTGGAG 3 cut(s) 240, 1412, 1932
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 4 cut(s) 495, 1311, 1352, 1994
HapII CCGG 4 cut(s) 387, 543, 1064, 1891
HgaI GACGC 1 cut(s) 669
HhaI GCGC 1 cut(s) 507
Hin1I GRCGYC 1 cut(s) 505
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 2 cut(s) 327, 1008
HindII GTYRAC 2 cut(s) 327, 1008
HindIII AAGCTT 3 cut(s) 1043, 1513, 1902
HpaI GTTAAC 1 cut(s) 1008
HpaII CCGG 4 cut(s) 387, 543, 1064, 1891
HphI GGTGA 2 cut(s) 544, 911
Hpy166II GTNNAC 6 cut(s) 327, 552, 902, 1008, 1262, 1285
Hpy188I TCNGA 9 cut(s) 306, 402, 448, 560, 739, 1240, 1279, 1702, 1778
Hpy188III TCNNGA 8 cut(s) 569, 1343, 1391, 1399, 1418, 1626, 1898, 1940
Hpy8I GTNNAC 6 cut(s) 327, 552, 902, 1008, 1262, 1285
HpyAV CCTTC 2 cut(s) 565, 592
HpyCH4III ACNGT 7 cut(s) 23, 90, 731, 854, 909, 1130, 1785
HpyCH4IV ACGT 4 cut(s) 818, 1243, 1869, 2044
HpyCH4V TGCA 5 cut(s) 215, 335, 353, 921, 1137
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 799, 2000
HpyF3I CTNAG 3 cut(s) 401, 736, 745
HpySE526I ACGT 4 cut(s) 818, 1243, 1869, 2044
Hsp92I GRCGYC 1 cut(s) 505
HspAI GCGC 1 cut(s) 505
KasI GGCGCC 1 cut(s) 504
Ksp22I TGATCA 2 cut(s) 270, 436
KspAI GTTAAC 1 cut(s) 1008
LmnI GCTCC 1 cut(s) 1951
Lsp1109I GCAGC 3 cut(s) 508, 780, 974
LweI GCATC 1 cut(s) 344
MaeI CTAG 6 cut(s) 309, 377, 810, 1217, 1418, 1626
MaeII ACGT 4 cut(s) 818, 1243, 1869, 2044
MaeIII GTNAC 8 cut(s) 17, 25, 101, 415, 1031, 1106, 2062, 2086
MboII GAAGA 6 cut(s) 111, 139, 422, 1481, 1484, 1822
MflI RGATCY 3 cut(s) 565, 1213, 1648
MlsI TGGCCA 2 cut(s) 495, 1352
MluNI TGGCCA 2 cut(s) 495, 1352
Mly113I GGCGCC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 1108
MmeI TCCRAC 4 cut(s) 279, 804, 1536, 1653
Mox20I TGGCCA 2 cut(s) 495, 1352
Mph1103I ATGCAT 1 cut(s) 337
MscI TGGCCA 2 cut(s) 495, 1352
MseI TTAA 2 cut(s) 468, 1007
MslI CAYNNNNRTG 4 cut(s) 220, 916, 922, 1155
Msp20I TGGCCA 2 cut(s) 495, 1352
MspA1I CMGCKG 2 cut(s) 965, 1952
MspI CCGG 4 cut(s) 387, 543, 1064, 1891
MspR9I CCNGG 7 cut(s) 84, 258, 462, 517, 543, 595, 669
Mva1269I GAATGC 1 cut(s) 1819
MvaI CCWGG 6 cut(s) 84, 258, 462, 517, 595, 669
MvnI CGCG 1 cut(s) 680
MwoI GCNNNNNNNGC 3 cut(s) 40, 799, 2000
NarI GGCGCC 1 cut(s) 505
NciI CCSGG 1 cut(s) 543
NdeI CATATG 1 cut(s) 1983
NlaIV GGNNCC 4 cut(s) 130, 506, 676, 877
NmuCI GTSAC 2 cut(s) 415, 1106
NsiI ATGCAT 1 cut(s) 337
NspI RCATGY 4 cut(s) 1014, 1154, 1504, 1890
PagI TCATGA 2 cut(s) 1390, 1897
PciI ACATGT 2 cut(s) 1010, 1500
PctI GAATGC 1 cut(s) 1819
PfeI GAWTC 9 cut(s) 192, 239, 251, 358, 769, 1225, 1535, 1894, 1978
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 3 cut(s) 523, 795, 989
PleI GAGTC 1 cut(s) 1107
PluTI GGCGCC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 1107
Ppu21I YACGTR 1 cut(s) 2045
PpuMI RGGWCCY 1 cut(s) 129
PscI ACATGT 2 cut(s) 1010, 1500
PsiI TTATAA 1 cut(s) 1320
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 6 cut(s) 82, 256, 460, 515, 593, 667
PspEI GGTNACC 1 cut(s) 101
PspGI CCWGG 6 cut(s) 82, 256, 460, 515, 593, 667
PspN4I GGNNCC 4 cut(s) 130, 506, 676, 877
PspPI GGNCC 4 cut(s) 129, 875, 978, 1310
PspPPI RGGWCCY 1 cut(s) 129
PstI CTGCAG 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 987
PsuI RGATCY 3 cut(s) 565, 1213, 1648
PvuII CAGCTG 2 cut(s) 965, 1952
RsaI GTAC 6 cut(s) 61, 81, 576, 632, 1499, 1782
RsaNI GTAC 6 cut(s) 60, 80, 575, 631, 1498, 1781
RseI CAYNNNNRTG 4 cut(s) 220, 916, 922, 1155
SaqAI TTAA 2 cut(s) 468, 1007
SatI GCNGC 3 cut(s) 522, 794, 988
Sau96I GGNCC 4 cut(s) 129, 875, 978, 1310
ScaI AGTACT 1 cut(s) 1782
SchI GAGTC 1 cut(s) 1108
ScrFI CCNGG 7 cut(s) 84, 258, 462, 517, 543, 595, 669
SfaNI GCATC 1 cut(s) 344
SfcI CTRYAG 1 cut(s) 351
SfoI GGCGCC 1 cut(s) 506
SinI GGWCC 3 cut(s) 129, 875, 978
SmiMI CAYNNNNRTG 4 cut(s) 220, 916, 922, 1155
SmlI CTYRAG 2 cut(s) 1596, 1988
SmoI CTYRAG 2 cut(s) 1596, 1988
SsiI CCGC 2 cut(s) 678, 873
SspDI GGCGCC 1 cut(s) 504
SspMI CTAG 6 cut(s) 309, 377, 810, 1217, 1418, 1626
StyD4I CCNGG 7 cut(s) 82, 256, 460, 515, 541, 593, 667
StyI CCWWGG 2 cut(s) 124, 181
TaaI ACNGT 7 cut(s) 23, 90, 731, 854, 909, 1130, 1785
TaiI ACGT 4 cut(s) 821, 1246, 1872, 2047
TaqI TCGA 4 cut(s) 195, 1510, 1957, 2110
TatI WGTACW 3 cut(s) 630, 1497, 1780
TfiI GAWTC 9 cut(s) 192, 239, 251, 358, 769, 1225, 1535, 1894, 1978
Tru1I TTAA 2 cut(s) 468, 1007
Tru9I TTAA 2 cut(s) 468, 1007
TscAI CASTG 9 cut(s) 36, 103, 280, 360, 736, 912, 988, 1109, 1848
TseFI GTSAC 2 cut(s) 415, 1106
TseI GCWGC 3 cut(s) 521, 793, 987
Tsp45I GTSAC 2 cut(s) 415, 1106
TspDTI ATGAA 8 cut(s) 126, 1491, 1700, 1886, 1914, 1970, 1998, 2013
TspGWI ACGGA 2 cut(s) 1182, 1963
TspRI CASTG 9 cut(s) 36, 103, 280, 360, 736, 912, 988, 1109, 1848
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 3 cut(s) 129, 875, 978
XapI RAATTY 7 cut(s) 163, 835, 1326, 1523, 1719, 1837, 2050
XbaI TCTAGA 2 cut(s) 1417, 1625
XceI RCATGY 4 cut(s) 1014, 1154, 1504, 1890
XmiI GTMKAC 1 cut(s) 1261
XspI CTAG 6 cut(s) 309, 377, 810, 1217, 1418, 1626
ZrmI AGTACT 1 cut(s) 1782
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.