Rroxscaffold_1G00031590

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000114
Physical Location & Seq
Forward (+)
44680519 .. 44684548
4030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031590.1

Sequence Viewer

Length: 2298 bp
ATGGGGTGGCTCTTGTATTACCTGGTACTGCTCTTATCTCATATCCTGTCATTTTGTACCTGCCAAGACAAAATAGCACCAGGACAGTATATCAGTGGTAACGACACTTTAGTTTCTTCCCATGGGGCCTTTTCATTAGGCTTCTTTAATCCTGAAAATTCTACTAAATACTTCGTTGGTATACGATTCAACACATTCCCAAACACAGCATTAGTATGGGTTGCTAATAGAGAATCTCCACTTGATTCTCCGGGTTTCTTTATGATCAGCAGGGATGGAAATCTTGTGATGTTGGATCAGACTAGAAATCTTGTCTGGTCAACCAATGCATCAATATCTGCTTCTGCAATGAATCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAACTCACTTTGTGGCAGAGCTTCAACCATCCCTCTGATACTATGTTGCCTGGCATTAAGATAAGCTTGAACAAAGCGACTGGCCAACATAGCCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAGTTCACCTGCGGCATAGATCCTAAAGTACCAGTTCAGGGCTTTATCTGGAATGAAACTACTCCGTATTATAGAAGTTCCGTGTACGTTGGCAAGGATACGAGAACAGAGTTTCAAAATACAGGTGGAACCGCGTTTTTCCTTTCATACAACTTTGATGTTGATGAGGTTTACGTTTATTTTGCTTACAGTGTCTCGGATAGCTCAGTAAAATTGAGGGTCTGGTTGGATCCTACCGGGAAAGTTAAACAGCTGCTGTGGCAGGGTTCTAGTAAAACGTGGTTGGAACTGAGTGAATCACCCGTTGATAAATGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGATATGAACCCCTGCCATCACCATGCGAGTGTTTGACTGGTTTTACAGCCAAGTTTCCAAACCAATGGGCGGTGGGGAATTGGTCCAGTGGCTGCGTTAGGGAAAAGGTATTGACATGTGGTAATGACATAAAGAGTTACTTTTCAAAGCTTGAAAGGGTGAAACTGCCGGATCATTCTGTCCTTTTAAACAATAGGAGTATCAGCGAGTGTGAATCTGAATGTCGGCAGAACTGTTCTTGCACAGCTTATGCTTATGTAAATGAGACAGATGGAAGTAATATTGGGACATGCTTGGCATGGTTTGGCGAATTACTAGATCTAGTAGAGAATATAACTATTTCTGCACAGGATATTTATATTCGTGTTCATGTCTCTGAACTAGTGCAGGAGTTGGGAAGAATGATACAGATAGAACTAACTCTCTTCAGTTTAAGGAGTATATTAGCTGCTACAAACAACTTCTCTGAAGCGAATAAACTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGAAGTTTACCAGAAAATCAAGAAGCGGCCATAAAGAGGCTATCGAAGAAGTCTGGGCAAGGACATCATGAGTTCACGAATGAGTTGAAACTTATAGCCAAACTCCAGCATACCAATCTTGTTAGGCTATTGGGTTGCTGTATGGAAGAAGATGAAATGATATTGATCTACGAGTACATGTCTAATCAAAGTTTGGACAAATTTTTGTTTGATCCTTTTCAAAAGACAAAGTTGGATTGGGATACACGCTTTCGAATTATACAAGGTATTGCTCAAGGAGTACTATATATCCACAAATACTCTAGATTGAAAATCATCCACAGAGATCTAAAAGCAAGTAATGTTCTGTTGGATGGTACAATGAACCCGAAAGTGTCCGACTTTGGAATGGCAAGAATTTTTGATATAAACCAAATTGAAGCAAATACCAAAAAGATTGTTGGGACATATGGCTACATGTCTCCTGAATATGCACTCTATGGTCATTTCTCTGAGACATTGGATGTATTTAGTTTCGGAGTATTGTTGTTAGAGATTGTAAGTGGAAAAAAGAATGCTCGTTTTTATCACTTTGAAAATTCACTAACGCTTGCTCAATGGATATGGGAATTATGGAAAGAAGGTAGAGGAACGGAGGTAATTGACGCATCAGTAAGGGAAACATGCCGGATTCATGAAGCTTTGAGGTGTATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGACCCACAATGTCATCGGTGATTCATATGCTCGAGGTCAATGAAGCTACATCACTTCCACCCTCCAAAGAACCTGCTTTTTCAACAAGTAGGAATTCAAGTCCTGTTACCACTTATTCCAAAAATGTATTCACTATTACTTTGCCAAAACCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

765

Amino Acids

86.16

Weight (kDa)

6.02

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 171 2.1e-29 D-mannose binding lectin
S_locus_glycop PF00954 228 - 316 5.2e-18 S-locus glycoprotein domain
PAN_2 PF08276 342 - 406 9.5e-15 PAN-like domain
Pkinase PF00069 454 - 722 3e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 456 - 723 2e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1404
AarI CACCTGC 1 cut(s) 557
Acc36I ACCTGC 3 cut(s) 68, 557, 2221
AccI GTMKAC 1 cut(s) 181
AccII CGCG 1 cut(s) 674
AciI CCGC 6 cut(s) 499, 552, 672, 873, 965, 1433
AclWI GGATC 7 cut(s) 303, 521, 554, 764, 777, 1074, 1613
AcoI YGGCCR 2 cut(s) 487, 1434
AcsI RAATTY 5 cut(s) 157, 1607, 1803, 1984, 2233
AcuI CTGAAG 2 cut(s) 1306, 1383
AdeI CACNNNGTG 1 cut(s) 417
AfaI GTAC 7 cut(s) 27, 58, 570, 626, 1583, 1689, 1765
AfeI AGCGCT 1 cut(s) 519
AfiI CCNNNNNNNGG 4 cut(s) 536, 578, 964, 1443
AflIII ACRYGT 3 cut(s) 1010, 1584, 1863
AhlI ACTAGT 1 cut(s) 1276
AjnI CCWGG 4 cut(s) 21, 79, 454, 509
AjuI GAANNNNNNNTTGG 2 cut(s) 2252, 2284
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
Alw26I GTCTC 5 cut(s) 739, 1154, 1273, 1872, 1895
AlwI GGATC 7 cut(s) 303, 521, 554, 764, 777, 1074, 1613
AlwNI CAGNNNCTG 2 cut(s) 796, 987
Ama87I CYCGRG 1 cut(s) 2171
Aor51HI AGCGCT 1 cut(s) 519
AoxI GGCC 4 cut(s) 126, 487, 1393, 1434
ApeKI GCWGC 4 cut(s) 515, 793, 987, 1343
ApoI RAATTY 5 cut(s) 157, 1607, 1803, 1984, 2233
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 4 cut(s) 126, 875, 978, 1394
AsuC2I CCSGG 3 cut(s) 252, 537, 778
AsuHPI GGTGA 5 cut(s) 538, 831, 906, 1066, 2170
AsuII TTCGAA 1 cut(s) 1660
AvaI CYCGRG 1 cut(s) 2171
AvaII GGWCC 2 cut(s) 875, 978
BalI TGGCCA 1 cut(s) 489
BamHI GGATCC 1 cut(s) 769
BbvI GCAGC 4 cut(s) 527, 780, 974, 1330
BccI CCATC 5 cut(s) 269, 441, 919, 1160, 1754
BciT130I CCWGG 4 cut(s) 23, 81, 456, 511
BciVI GTATCC 4 cut(s) 370, 631, 1642, 2108
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 3 cut(s) 252, 537, 778
BcoDI GTCTC 5 cut(s) 739, 1154, 1273, 1872, 1895
BcuI ACTAGT 1 cut(s) 1276
BfaI CTAG 7 cut(s) 303, 371, 810, 1211, 1217, 1277, 1710
BfoI RGCGCY 1 cut(s) 521
BfuAI ACCTGC 3 cut(s) 68, 557, 2221
BfuI GTATCC 4 cut(s) 370, 631, 1642, 2108
BglII AGATCT 2 cut(s) 1213, 1732
BisI GCNGC 7 cut(s) 499, 516, 553, 794, 988, 1344, 1434
BlsI GCNGC 7 cut(s) 500, 517, 554, 795, 989, 1345, 1435
BmcAI AGTACT 1 cut(s) 1689
Bme1390I CCNGG 7 cut(s) 23, 81, 252, 456, 511, 537, 778
Bme18I GGWCC 2 cut(s) 875, 978
BmeT110I CYCGRG 1 cut(s) 2171
BmgT120I GGNCC 4 cut(s) 126, 875, 978, 1394
BmiI GGNNCC 4 cut(s) 127, 670, 771, 877
BmrFI CCNGG 7 cut(s) 23, 81, 252, 456, 511, 537, 778
BmsI GCATC 2 cut(s) 338, 2063
BpmI CTGGAG 2 cut(s) 1496, 2115
Bpu14I TTCGAA 1 cut(s) 1660
BpuEI CTTGAG 1 cut(s) 1665
BpuMI CCSGG 3 cut(s) 252, 537, 778
BsaBI GATNNNNATC 2 cut(s) 279, 1571
BsaJI CCNNGG 2 cut(s) 121, 510
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 4 cut(s) 536, 578, 964, 1443
Bse1I ACTGG 5 cut(s) 367, 490, 572, 937, 981
Bse3DI GCAATG 2 cut(s) 354, 868
Bse8I GATNNNNATC 2 cut(s) 279, 1571
BseBI CCWGG 4 cut(s) 23, 81, 456, 511
BseDI CCNNGG 2 cut(s) 121, 510
BseGI GGATG 6 cut(s) 280, 433, 506, 1722, 1765, 1915
BseJI GATNNNNATC 2 cut(s) 279, 1571
BseLI CCNNNNNNNGG 4 cut(s) 536, 578, 964, 1443
BseMI GCAATG 2 cut(s) 354, 868
BseMII CTCAG 4 cut(s) 386, 759, 821, 1890
BseNI ACTGG 5 cut(s) 367, 490, 572, 937, 981
BseXI GCAGC 4 cut(s) 527, 780, 974, 1330
BsgI GTGCAG 2 cut(s) 1224, 1301
Bsh1236I CGCG 1 cut(s) 674
BshFI GGCC 4 cut(s) 128, 489, 1395, 1436
BsiHKCI CYCGRG 1 cut(s) 2171
BsiSI CCGG 6 cut(s) 251, 381, 537, 777, 1064, 2074
BslFI GGGAC 3 cut(s) 861, 1195, 1864
BslI CCNNNNNNNGG 4 cut(s) 536, 578, 964, 1443
BsmAI GTCTC 5 cut(s) 739, 1154, 1273, 1872, 1895
BsmFI GGGAC 3 cut(s) 861, 1195, 1864
BsmI GAATGC 1 cut(s) 1966
BsnI GGCC 4 cut(s) 128, 489, 1395, 1436
BsoBI CYCGRG 1 cut(s) 2171
Bsp119I TTCGAA 1 cut(s) 1660
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 6 cut(s) 499, 552, 672, 873, 965, 1433
BspANI GGCC 4 cut(s) 128, 489, 1395, 1436
BspCNI CTCAG 4 cut(s) 387, 758, 822, 1891
BspFNI CGCG 1 cut(s) 674
BspHI TCATGA 2 cut(s) 1474, 2080
BspLI GGNNCC 4 cut(s) 127, 670, 771, 877
BspMI ACCTGC 3 cut(s) 68, 557, 2221
BspPI GGATC 7 cut(s) 303, 521, 554, 764, 777, 1074, 1613
BspT104I TTCGAA 1 cut(s) 1660
BsrDI GCAATG 2 cut(s) 354, 868
BsrI ACTGG 5 cut(s) 367, 490, 572, 937, 981
BssECI CCNNGG 2 cut(s) 121, 510
BssNAI GTATAC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 121
Bst1107I GTATAC 1 cut(s) 182
Bst2UI CCWGG 4 cut(s) 23, 81, 456, 511
Bst4CI ACNGT 3 cut(s) 87, 731, 1130
Bst6I CTCTTC 1 cut(s) 1325
BstBI TTCGAA 1 cut(s) 1660
BstC8I GCNNGC 1 cut(s) 1998
BstDEI CTNAG 4 cut(s) 395, 745, 830, 1899
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 6 cut(s) 280, 433, 506, 1722, 1765, 1915
BstFNI CGCG 1 cut(s) 674
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 1 cut(s) 520
BstMAI GTCTC 5 cut(s) 739, 1154, 1273, 1872, 1895
BstMWI GCNNNNNNNGC 2 cut(s) 495, 799
BstNI CCWGG 4 cut(s) 23, 81, 456, 511
BstNSI RCATGY 5 cut(s) 1014, 1188, 1588, 1867, 2073
BstSCI CCNGG 7 cut(s) 21, 79, 250, 454, 509, 535, 776
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 4 cut(s) 527, 780, 974, 1330
BstX2I RGATCY 4 cut(s) 559, 769, 1213, 1732
BstXI CCANNNNNNTGG 1 cut(s) 960
BstYI RGATCY 4 cut(s) 559, 769, 1213, 1732
BstZ17I GTATAC 1 cut(s) 182
BsuI GTATCC 4 cut(s) 370, 631, 1642, 2108
BsuRI GGCC 4 cut(s) 128, 489, 1395, 1436
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 6 cut(s) 280, 433, 506, 1722, 1765, 1915
BtsIMutI CAGTG 3 cut(s) 100, 736, 988
BveI ACCTGC 3 cut(s) 68, 557, 2221
Cac8I GCNNGC 1 cut(s) 1998
CaiI CAGNNNCTG 2 cut(s) 796, 987
CciI TCATGA 2 cut(s) 1474, 2080
CfoI GCGC 1 cut(s) 520
Cfr13I GGNCC 4 cut(s) 126, 875, 978, 1394
CseI GACGC 1 cut(s) 2060
CsiI ACCWGGT 1 cut(s) 21
Csp6I GTAC 7 cut(s) 26, 57, 569, 625, 1582, 1688, 1764
CviQI GTAC 7 cut(s) 26, 57, 569, 625, 1582, 1688, 1764
DdeI CTNAG 4 cut(s) 395, 745, 830, 1899
DraI TTTAAA 1 cut(s) 1083
DraIII CACNNNGTG 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 487, 1434
Eam1104I CTCTTC 1 cut(s) 1325
EarI CTCTTC 1 cut(s) 1325
Eco130I CCWWGG 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 875, 978
Eco47III AGCGCT 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 1306, 1383
Eco88I CYCGRG 1 cut(s) 2171
EcoO109I RGGNCCY 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 2233
EcoRII CCWGG 4 cut(s) 21, 79, 454, 509
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 121
FalI AAGNNNNNCTT 4 cut(s) 455, 487, 1019, 1051
FaqI GGGAC 3 cut(s) 861, 1195, 1864
FauNDI CATATG 2 cut(s) 1855, 2166
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 7 cut(s) 499, 516, 553, 794, 988, 1344, 1434
FokI GGATG 6 cut(s) 287, 420, 493, 1709, 1772, 1922
Fsp4HI GCNGC 7 cut(s) 499, 516, 553, 794, 988, 1344, 1434
FspBI CTAG 7 cut(s) 303, 371, 810, 1211, 1217, 1277, 1710
GlaI GCGC 1 cut(s) 519
GluI GCNGC 7 cut(s) 499, 516, 553, 794, 988, 1344, 1434
GsuI CTGGAG 2 cut(s) 1496, 2115
HaeII RGCGCY 1 cut(s) 521
HaeIII GGCC 4 cut(s) 128, 489, 1395, 1436
HapII CCGG 6 cut(s) 251, 381, 537, 777, 1064, 2074
HgaI GACGC 1 cut(s) 2060
HhaI GCGC 1 cut(s) 520
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 3 cut(s) 469, 1043, 2085
HinfI GANTC 8 cut(s) 186, 233, 245, 352, 836, 1109, 2077, 2161
HpaII CCGG 6 cut(s) 251, 381, 537, 777, 1064, 2074
HphI GGTGA 5 cut(s) 538, 831, 906, 1066, 2170
Hpy166II GTNNAC 7 cut(s) 182, 321, 546, 625, 712, 1415, 1482
Hpy188III TCNNGA 9 cut(s) 152, 589, 1427, 1475, 1483, 1710, 1871, 2081, 2123
Hpy8I GTNNAC 7 cut(s) 182, 321, 546, 625, 712, 1415, 1482
HpyAV CCTTC 1 cut(s) 2021
HpyCH4III ACNGT 3 cut(s) 87, 731, 1130
HpyCH4IV ACGT 3 cut(s) 627, 714, 818
HpyCH4V TGCA 6 cut(s) 329, 347, 1137, 1241, 1282, 1880
HpyF10VI GCNNNNNNNGC 2 cut(s) 495, 799
HpyF3I CTNAG 4 cut(s) 395, 745, 830, 1899
HpySE526I ACGT 3 cut(s) 627, 714, 818
HspAI GCGC 1 cut(s) 518
Ksp22I TGATCA 1 cut(s) 264
LmnI GCTCC 1 cut(s) 2134
Lsp1109I GCAGC 4 cut(s) 527, 780, 974, 1330
LweI GCATC 2 cut(s) 338, 2063
MabI ACCWGGT 1 cut(s) 21
MaeI CTAG 7 cut(s) 303, 371, 810, 1211, 1217, 1277, 1710
MaeII ACGT 3 cut(s) 627, 714, 818
MaeIII GTNAC 3 cut(s) 98, 1031, 2245
MboII GAAGA 7 cut(s) 108, 416, 1305, 1312, 1465, 1565, 1568
MflI RGATCY 4 cut(s) 559, 769, 1213, 1732
MlsI TGGCCA 1 cut(s) 489
MluNI TGGCCA 1 cut(s) 489
MmeI TCCRAC 6 cut(s) 273, 747, 804, 1620, 1737, 1809
Mox20I TGGCCA 1 cut(s) 489
Mph1103I ATGCAT 1 cut(s) 331
MscI TGGCCA 1 cut(s) 489
MseI TTAA 5 cut(s) 147, 462, 786, 1082, 1328
MslI CAYNNNNRTG 3 cut(s) 214, 916, 922
Msp20I TGGCCA 1 cut(s) 489
MspA1I CMGCKG 2 cut(s) 793, 2135
MspI CCGG 6 cut(s) 251, 381, 537, 777, 1064, 2074
MspR9I CCNGG 7 cut(s) 23, 81, 252, 456, 511, 537, 778
Mva1269I GAATGC 1 cut(s) 1966
MvaI CCWGG 4 cut(s) 23, 81, 456, 511
MvnI CGCG 1 cut(s) 674
MwoI GCNNNNNNNGC 2 cut(s) 495, 799
NciI CCSGG 3 cut(s) 252, 537, 778
NcoI CCATGG 1 cut(s) 121
NdeI CATATG 2 cut(s) 1855, 2166
NlaIV GGNNCC 4 cut(s) 127, 670, 771, 877
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 5 cut(s) 1014, 1188, 1588, 1867, 2073
NspV TTCGAA 1 cut(s) 1660
PaeR7I CTCGAG 1 cut(s) 2171
PagI TCATGA 2 cut(s) 1474, 2080
PaqCI CACCTGC 1 cut(s) 557
PciI ACATGT 3 cut(s) 1010, 1584, 1863
PctI GAATGC 1 cut(s) 1966
PfeI GAWTC 8 cut(s) 186, 233, 245, 352, 836, 1109, 2077, 2161
PkrI GCNGC 7 cut(s) 500, 517, 554, 795, 989, 1345, 1435
PscI ACATGT 3 cut(s) 1010, 1584, 1863
PsiI TTATAA 1 cut(s) 1404
Psp6I CCWGG 4 cut(s) 21, 79, 454, 509
PspGI CCWGG 4 cut(s) 21, 79, 454, 509
PspN4I GGNNCC 4 cut(s) 127, 670, 771, 877
PspPI GGNCC 4 cut(s) 126, 875, 978, 1394
PspXI VCTCGAGB 1 cut(s) 2171
PstNI CAGNNNCTG 2 cut(s) 796, 987
PsuI RGATCY 4 cut(s) 559, 769, 1213, 1732
PvuII CAGCTG 2 cut(s) 793, 2135
RsaI GTAC 7 cut(s) 27, 58, 570, 626, 1583, 1689, 1765
RsaNI GTAC 7 cut(s) 26, 57, 569, 625, 1582, 1688, 1764
RseI CAYNNNNRTG 3 cut(s) 214, 916, 922
SaqAI TTAA 5 cut(s) 147, 462, 786, 1082, 1328
SatI GCNGC 7 cut(s) 499, 516, 553, 794, 988, 1344, 1434
Sau96I GGNCC 4 cut(s) 126, 875, 978, 1394
ScaI AGTACT 1 cut(s) 1689
ScrFI CCNGG 7 cut(s) 23, 81, 252, 456, 511, 537, 778
SexAI ACCWGGT 1 cut(s) 21
SfaNI GCATC 2 cut(s) 338, 2063
Sfr274I CTCGAG 1 cut(s) 2171
SfuI TTCGAA 1 cut(s) 1660
SinI GGWCC 2 cut(s) 875, 978
SlaI CTCGAG 1 cut(s) 2171
SmiMI CAYNNNNRTG 3 cut(s) 214, 916, 922
SmlI CTYRAG 2 cut(s) 1680, 2171
SmoI CTYRAG 2 cut(s) 1680, 2171
SpeI ACTAGT 1 cut(s) 1276
SsiI CCGC 6 cut(s) 499, 552, 672, 873, 965, 1433
SspI AATATT 1 cut(s) 1177
SspMI CTAG 7 cut(s) 303, 371, 810, 1211, 1217, 1277, 1710
StyD4I CCNGG 7 cut(s) 21, 79, 250, 454, 509, 535, 776
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 3 cut(s) 87, 731, 1130
TaiI ACGT 3 cut(s) 630, 717, 821
TaqI TCGA 5 cut(s) 1451, 1660, 2140, 2172, 2293
TatI WGTACW 2 cut(s) 1581, 1687
TauI GCSGC 3 cut(s) 501, 555, 1436
TfiI GAWTC 8 cut(s) 186, 233, 245, 352, 836, 1109, 2077, 2161
Tru1I TTAA 5 cut(s) 147, 462, 786, 1082, 1328
Tru9I TTAA 5 cut(s) 147, 462, 786, 1082, 1328
TscAI CASTG 3 cut(s) 100, 736, 988
TseI GCWGC 4 cut(s) 515, 793, 987, 1343
TspGWI ACGGA 3 cut(s) 594, 610, 2054
TspRI CASTG 3 cut(s) 100, 736, 988
VpaK11BI GGWCC 2 cut(s) 875, 978
XapI RAATTY 5 cut(s) 157, 1607, 1803, 1984, 2233
XbaI TCTAGA 1 cut(s) 1709
XceI RCATGY 5 cut(s) 1014, 1188, 1588, 1867, 2073
XhoI CTCGAG 1 cut(s) 2171
XmiI GTMKAC 1 cut(s) 181
XspI CTAG 7 cut(s) 303, 371, 810, 1211, 1217, 1277, 1710
ZrmI AGTACT 1 cut(s) 1689
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.