Rroxscaffold_2G00088820

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000114
Physical Location & Seq
Reverse (-)
10723308 .. 10726488
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088820.1

Sequence Viewer

Length: 2394 bp
ATGGAGTGGCTCTTCCCTTACCTTGTTATACTGCTTCCCTCTCTGATCTTTTCATTCTGTACCAGCCAAGACAACTTAGTACGGGGGAAATCTATCAGTGCAAACCAGACCTTGATTTCTTCCAATGGGACCTTTGCCTTAGGCTTCTTCAGACCTGAAAATTCAACTAAATACTTCCTTGGTATATGGTACGACAAACTCCCAAAGTTGACAGTAGTTTGGGTTGCTAACAGAGAATCCCCGCTTGATTCTCCGGGTGTTTTTACACTTGGTACTGATGGAAATCTTGTGGTGTTGCTAGACGTCGAAGCGAGCGCTCCAGTCTGGTCAACTAATTTAGTATTGGATGCTGCAAAGAATGGCACAACTGGTTTACTAACGGATACTGGAAACCTTGTTCTGAGATCTGGGGAAGAAACTTTGTGGGAGAGCTTCGATCATCCCTCTGATACAATTCTGCCTGGCATGAAGATTAGCTTGAACAAACTGACTGGCCAACAAAGCTGCCTCACATCCTGGGCAACGCTTGATGATCCACGACCAGGAAAGTTCACCTTATGCATTGATCCTAAAGGGCTGCAGGCATATATCTGGGAGGACAATAGTATTCAAAAATGGAGAATTGCTATGTACATTGGCAGAGACTCAAGAAGTGTCTTTGGAAATCCAGGTGGATCAGCCTTTTCCCTATCATACAACTTCGATGTTGATAAGGCTTATCTTACTTACAGTGTCTCGAATAGCTCACTGAAAATGAGAGTCTTGTTGAATCCTTTAGGGCAGATTGAGCTGCTGCTGTGGATCAGTAAAACTTGGTATCAACTGTGGAAGGCACCTGCTGATAACTGTGATTTTTATGATCGTTGCGGTCCATATGGTGCCTGTCGTAAAAATGAAAGCCTCTCATCACCGTGCAAGTGCTTGACAGGTTTTAAAGCCAAATTTTCAAACCAATGGGATATGCAGGATTGGTCCAGTGGCTGCGTTAGGGAAAAAGCATTGACATGTAGTAACGCAATGGAAGGGTACTTCTCAAAGTTAGAAGGGGTGAAACTACCAGATCATTCTGTTAATTTTGAGGATAGGAGCAAGGATGAGTGCAACTCCGAATGTCATCAGAGTTGTTCTTGCACGGCTTATGCTTATGTAAATGCGACGGAAGGAAGTAATACTGGGACATGTATGCAATGGTTTGGTGACTTAATCGATCTAGTAGAGAAATATGATATTATTACTACACATGATATTTTCATTCGCGTTCATGACTCCAAACTAGGTAACAAGGGTCTCTTTCATATTTCCTCGAAGAGGTCCATAGTAATTGCAATAGTCTCAGCTGCAGCTGGATTGCTTACAATAACTTTTGGTTGTTTCTTGTGGAAGAATTTGGGAAAGGAAGGGAGGATAGCAGGAAGAATGAGTGAGATTATAAGAAATGTTGGTGCAGGAGGTGGGAAAAATGATACAGAACTACCACTCTTCAGTTTAGGTCGTATATTAGCTGCTACAAACAACTTCTCTGAAGCAAACAAGCTTGGAGAGGGAGGATTTGGCCATGTTTATAAGGGAATTTTGCCAGAAAATCAAGAAGTGGCCATAAAGAGGCTATCAAAGAAGTCTCGGCAAGGACATCATGAGTTCATGAATGAGTTGAAGCTTATAGCCAAACTCCAGCATACAAATCTTGTTAGGCTCTTGGGTTGCTGTATAGAACAAGAGGAAATGATATTGATCTATGAGTACATGCCTAATCGAAGTTTGGACAAGTTTTTGTTTGACTCATCTGAGAAGACAAACTTGGACTGGGTTACACGCTTTCGAATCATAGAGGGTGTTGCTCAAGGGGTACTTTATATCCACAAATACTCTAGACTGAAAATTATTCACAGGGATCTAAAAGCAAGTAATGTGTTGTTGGATGCAAAGATGAACCCCAAAGTTTCAGACTTTGGAATGGCAAGAATTTTTGAGACAAATCAAATTGAAGCAAATACCGACAGGATTGTTGGGACATACGGCTACATGTCACCTGAGTATGCACTTTATGGCTATTTCTCTGAGAAATTGGATGTATATAGTTTTGGGGTATTGTTGTTAGAGATTGTATGGGAACTGTGGAAAGAAGGCAGAGCAGTGGAGGTGATTGATACATCAGTAAGGGATACTTGCCGGACTCATGAAACTTTGAGGTGTATCCATGTGGGGCTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGACCAACAATGTCATCCGTGATTCATATGCTTGAGGCCGATGAAGCTACTTCACTTCCACCCTCCAAAGAACCTGCTTTTTCAACACGTACGAATTCAACTCCTGTTACCACTTATTCCAACAATGCAGTCACTATTACTTTGCCAGAGGCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

797

Amino Acids

89.21

Weight (kDa)

6.16

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 173 1e-28 D-mannose binding lectin
S_locus_glycop PF00954 234 - 314 3.4e-19 S-locus glycoprotein domain
PAN_2 PF08276 341 - 404 1.7e-13 PAN-like domain
Pkinase PF00069 507 - 703 5e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 509 - 755 1.3e-50 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1430, 1563
AarI CACCTGC 1 cut(s) 844
AatII GACGTC 1 cut(s) 306
Acc36I ACCTGC 2 cut(s) 844, 2317
AccB1I GGYRCC 2 cut(s) 832, 878
AccII CGCG 1 cut(s) 1257
AciI CCGC 2 cut(s) 242, 867
AclWI GGATC 5 cut(s) 527, 560, 682, 809, 1899
AcoI YGGCCR 3 cut(s) 493, 1552, 1593
AcsI RAATTY 6 cut(s) 160, 941, 1384, 1569, 1962, 2329
AcuI CTGAAG 3 cut(s) 133, 1465, 1542
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 9 cut(s) 61, 81, 191, 274, 632, 1028, 1742, 1848, 2326
AfeI AGCGCT 1 cut(s) 316
AfiI CCNNNNNNNGG 3 cut(s) 542, 1308, 1602
AflIII ACRYGT 4 cut(s) 1004, 1178, 2022, 2321
AjnI CCWGG 4 cut(s) 460, 515, 541, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 1781, 1813
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
Alw26I GTCTC 6 cut(s) 636, 739, 1292, 1336, 1623, 1964
AlwI GGATC 5 cut(s) 527, 560, 682, 809, 1899
AlwNI CAGNNNCTG 1 cut(s) 981
Aor51HI AGCGCT 1 cut(s) 316
AoxI GGCC 4 cut(s) 493, 1552, 1593, 2271
ApeKI GCWGC 9 cut(s) 350, 504, 577, 790, 793, 981, 1337, 1340, 1502
ApoI RAATTY 6 cut(s) 160, 941, 1384, 1569, 1962, 2329
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 4 cut(s) 129, 869, 972, 1311
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 6 cut(s) 544, 900, 1060, 1208, 2019, 2152
AsuII TTCGAA 1 cut(s) 1819
AvaII GGWCC 4 cut(s) 129, 869, 972, 1311
AxyI CCTNAGG 1 cut(s) 139
BaeI ACNNNNGTAYC 2 cut(s) 2139, 2172
BalI TGGCCA 3 cut(s) 495, 1554, 1595
BanI GGYRCC 2 cut(s) 832, 878
BbsI GAAGAC 1 cut(s) 1796
BbvI GCAGC 9 cut(s) 337, 491, 564, 777, 780, 968, 1324, 1352, 1489
BccI CCATC 1 cut(s) 272
BceAI ACGGC 2 cut(s) 1149, 2032
BciT130I CCWGG 4 cut(s) 462, 517, 543, 669
BciVI GTATCC 3 cut(s) 376, 2155, 2204
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 6 cut(s) 636, 739, 1292, 1336, 1623, 1964
BfaI CTAG 4 cut(s) 299, 1211, 1274, 1869
BfmI CTRYAG 2 cut(s) 578, 1338
BfoI RGCGCY 1 cut(s) 318
BfuAI ACCTGC 2 cut(s) 844, 2317
BfuI GTATCC 3 cut(s) 376, 2155, 2204
BglII AGATCT 1 cut(s) 404
BisI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1338, 1341, 1503
BlsI GCNGC 9 cut(s) 352, 506, 579, 792, 795, 983, 1339, 1342, 1504
Bme1390I CCNGG 5 cut(s) 255, 462, 517, 543, 669
Bme18I GGWCC 4 cut(s) 129, 869, 972, 1311
BmgT120I GGNCC 4 cut(s) 129, 869, 972, 1311
BmiI GGNNCC 3 cut(s) 130, 834, 880
BmrFI CCNGG 5 cut(s) 255, 462, 517, 543, 669
BmrI ACTGGG 2 cut(s) 1182, 1813
BmsI GCATC 2 cut(s) 337, 1909
BmuI ACTGGG 2 cut(s) 1182, 1813
BpiI GAAGAC 1 cut(s) 1796
BplI GAGNNNNNCTC 2 cut(s) 1088, 1120
BpmI CTGGAG 3 cut(s) 303, 1655, 2211
Bpu14I TTCGAA 1 cut(s) 1819
BpuEI CTTGAG 3 cut(s) 631, 1824, 2288
BpuMI CCSGG 1 cut(s) 255
Bsa29I ATCGAT 1 cut(s) 1206
BsaAI YACGTR 1 cut(s) 2324
BsaBI GATNNNNATC 2 cut(s) 282, 1730
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 1292
BsaJI CCNNGG 2 cut(s) 178, 516
Bsc4I CCNNNNNNNGG 3 cut(s) 542, 1308, 1602
Bse1I ACTGG 7 cut(s) 320, 373, 391, 496, 975, 1177, 1808
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 2 cut(s) 1023, 1193
Bse8I GATNNNNATC 2 cut(s) 282, 1730
BseBI CCWGG 4 cut(s) 462, 517, 543, 669
BseCI ATCGAT 1 cut(s) 1206
BseDI CCNNGG 2 cut(s) 178, 516
BseGI GGATG 7 cut(s) 352, 439, 512, 1099, 1924, 2074, 2249
BseJI GATNNNNATC 2 cut(s) 282, 1730
BseLI CCNNNNNNNGG 3 cut(s) 542, 1308, 1602
BseMI GCAATG 2 cut(s) 1023, 1193
BseMII CTCAG 5 cut(s) 392, 1347, 1776, 2022, 2049
BseNI ACTGG 7 cut(s) 320, 373, 391, 496, 975, 1177, 1808
BseXI GCAGC 9 cut(s) 337, 491, 564, 777, 780, 968, 1324, 1352, 1489
BsgI GTGCAG 1 cut(s) 1464
Bsh1236I CGCG 1 cut(s) 1257
BshFI GGCC 4 cut(s) 495, 1554, 1595, 2273
BshNI GGYRCC 2 cut(s) 832, 878
BshVI ATCGAT 1 cut(s) 1206
BsiSI CCGG 2 cut(s) 254, 2170
BsiWI CGTACG 1 cut(s) 2324
BslFI GGGAC 3 cut(s) 142, 1189, 2023
BslI CCNNNNNNNGG 3 cut(s) 542, 1308, 1602
BsmAI GTCTC 6 cut(s) 636, 739, 1292, 1336, 1623, 1964
BsmFI GGGAC 3 cut(s) 142, 1189, 2023
BsnI GGCC 4 cut(s) 495, 1554, 1595, 2273
Bso31I GGTCTC 1 cut(s) 1292
Bsp119I TTCGAA 1 cut(s) 1819
Bsp1407I TGTACA 1 cut(s) 630
BspACI CCGC 2 cut(s) 242, 867
BspANI GGCC 4 cut(s) 495, 1554, 1595, 2273
BspCNI CTCAG 5 cut(s) 393, 1346, 1777, 2023, 2050
BspDI ATCGAT 1 cut(s) 1206
BspFNI CGCG 1 cut(s) 1257
BspHI TCATGA 4 cut(s) 1261, 1633, 1641, 2176
BspLI GGNNCC 3 cut(s) 130, 834, 880
BspMAI CTGCAG 2 cut(s) 582, 1342
BspMI ACCTGC 2 cut(s) 844, 2317
BspPI GGATC 5 cut(s) 527, 560, 682, 809, 1899
BspQI GCTCTTC 1 cut(s) 17
BspT104I TTCGAA 1 cut(s) 1819
BspT107I GGYRCC 2 cut(s) 832, 878
BspTNI GGTCTC 1 cut(s) 1292
BsrDI GCAATG 2 cut(s) 1023, 1193
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 7 cut(s) 320, 373, 391, 496, 975, 1177, 1808
BssECI CCNNGG 2 cut(s) 178, 516
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 4 cut(s) 462, 517, 543, 669
Bst4CI ACNGT 6 cut(s) 214, 731, 825, 848, 912, 2115
Bst6I CTCTTC 3 cut(s) 17, 1301, 1484
BstACI GRCGYC 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 2324
BstBI TTCGAA 1 cut(s) 1819
BstC8I GCNNGC 2 cut(s) 313, 582
BstDEI CTNAG 7 cut(s) 76, 139, 401, 1333, 1785, 2031, 2058
BstENI CCTNNNNNAGG 1 cut(s) 1306
BstF5I GGATG 7 cut(s) 352, 439, 512, 1099, 1924, 2074, 2249
BstFNI CGCG 1 cut(s) 1257
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 6 cut(s) 636, 739, 1292, 1336, 1623, 1964
BstMWI GCNNNNNNNGC 3 cut(s) 501, 787, 2279
BstNI CCWGG 4 cut(s) 462, 517, 543, 669
BstNSI RCATGY 4 cut(s) 1008, 1182, 1747, 2026
BstSCI CCNGG 5 cut(s) 253, 460, 515, 541, 667
BstSFI CTRYAG 2 cut(s) 578, 1338
BstUI CGCG 1 cut(s) 1257
BstV1I GCAGC 9 cut(s) 337, 491, 564, 777, 780, 968, 1324, 1352, 1489
BstV2I GAAGAC 1 cut(s) 1796
BstX2I RGATCY 2 cut(s) 404, 1891
BstYI RGATCY 2 cut(s) 404, 1891
Bsu15I ATCGAT 1 cut(s) 1206
Bsu36I CCTNAGG 1 cut(s) 139
BsuI GTATCC 3 cut(s) 376, 2155, 2204
BsuRI GGCC 4 cut(s) 495, 1554, 1595, 2273
BsuTUI ATCGAT 1 cut(s) 1206
BtsCI GGATG 7 cut(s) 352, 439, 512, 1099, 1924, 2074, 2249
BtsI GCAGTG 1 cut(s) 2139
BtsIMutI CAGTG 5 cut(s) 103, 736, 746, 982, 2139
BveI ACCTGC 2 cut(s) 844, 2317
Cac8I GCNNGC 2 cut(s) 313, 582
CaiI CAGNNNCTG 1 cut(s) 981
CciI TCATGA 4 cut(s) 1261, 1633, 1641, 2176
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 4 cut(s) 129, 869, 972, 1311
ClaI ATCGAT 1 cut(s) 1206
Csp6I GTAC 9 cut(s) 60, 80, 190, 273, 631, 1027, 1741, 1847, 2325
CviQI GTAC 9 cut(s) 60, 80, 190, 273, 631, 1027, 1741, 1847, 2325
DdeI CTNAG 7 cut(s) 76, 139, 401, 1333, 1785, 2031, 2058
DraI TTTAAA 1 cut(s) 934
EaeI YGGCCR 3 cut(s) 493, 1552, 1593
Eam1104I CTCTTC 3 cut(s) 17, 1301, 1484
EarI CTCTTC 3 cut(s) 17, 1301, 1484
Eco130I CCWWGG 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 1292
Eco47I GGWCC 4 cut(s) 129, 869, 972, 1311
Eco47III AGCGCT 1 cut(s) 316
Eco57I CTGAAG 3 cut(s) 133, 1465, 1542
Eco81I CCTNAGG 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 1306
EcoO109I RGGNCCY 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 2329
EcoRII CCWGG 4 cut(s) 460, 515, 541, 667
EcoT14I CCWWGG 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 178
FaqI GGGAC 3 cut(s) 142, 1189, 2023
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 2 cut(s) 874, 2262
Fnu4HI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1338, 1341, 1503
FokI GGATG 7 cut(s) 359, 426, 499, 1106, 1931, 2081, 2236
Fsp4HI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1338, 1341, 1503
FspBI CTAG 4 cut(s) 299, 1211, 1274, 1869
GlaI GCGC 1 cut(s) 316
GluI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1338, 1341, 1503
GsuI CTGGAG 3 cut(s) 303, 1655, 2211
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 4 cut(s) 495, 1554, 1595, 2273
HapII CCGG 2 cut(s) 254, 2170
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 2 cut(s) 210, 330
HindII GTYRAC 2 cut(s) 210, 330
HindIII AAGCTT 2 cut(s) 1532, 1655
HpaII CCGG 2 cut(s) 254, 2170
HphI GGTGA 6 cut(s) 544, 900, 1060, 1208, 2019, 2152
Hpy166II GTNNAC 4 cut(s) 210, 330, 374, 552
Hpy188III TCNNGA 9 cut(s) 648, 736, 1262, 1586, 1634, 1642, 1869, 2177, 2219
Hpy8I GTNNAC 4 cut(s) 210, 330, 374, 552
Hpy99I CGWCG 2 cut(s) 308, 1159
HpyAV CCTTC 6 cut(s) 823, 1016, 1037, 1154, 1391, 2117
HpyCH4III ACNGT 6 cut(s) 214, 731, 825, 848, 912, 2115
HpyCH4IV ACGT 2 cut(s) 303, 2323
HpyF10VI GCNNNNNNNGC 3 cut(s) 501, 787, 2279
HpyF3I CTNAG 7 cut(s) 76, 139, 401, 1333, 1785, 2031, 2058
HpySE526I ACGT 2 cut(s) 303, 2323
Hsp92I GRCGYC 1 cut(s) 303
HspAI GCGC 1 cut(s) 315
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 3 cut(s) 322, 1086, 2230
Lsp1109I GCAGC 9 cut(s) 337, 491, 564, 777, 780, 968, 1324, 1352, 1489
LweI GCATC 2 cut(s) 337, 1909
MaeI CTAG 4 cut(s) 299, 1211, 1274, 1869
MaeII ACGT 2 cut(s) 303, 2323
MaeIII GTNAC 7 cut(s) 1010, 1196, 1277, 1807, 2025, 2341, 2365
MflI RGATCY 2 cut(s) 404, 1891
MlsI TGGCCA 3 cut(s) 495, 1554, 1595
MluNI TGGCCA 3 cut(s) 495, 1554, 1595
MlyI GAGTC 5 cut(s) 638, 768, 1259, 1772, 2167
MmeI TCCRAC 2 cut(s) 1896, 2379
Mox20I TGGCCA 3 cut(s) 495, 1554, 1595
Mph1103I ATGCAT 1 cut(s) 563
MscI TGGCCA 3 cut(s) 495, 1554, 1595
MseI TTAA 3 cut(s) 933, 1071, 1202
MslI CAYNNNNRTG 2 cut(s) 910, 1003
Msp20I TGGCCA 3 cut(s) 495, 1554, 1595
MspA1I CMGCKG 3 cut(s) 1337, 1343, 2231
MspI CCGG 2 cut(s) 254, 2170
MspR9I CCNGG 5 cut(s) 255, 462, 517, 543, 669
MvaI CCWGG 4 cut(s) 462, 517, 543, 669
MvnI CGCG 1 cut(s) 1257
MwoI GCNNNNNNNGC 3 cut(s) 501, 787, 2279
NciI CCSGG 1 cut(s) 255
NdeI CATATG 2 cut(s) 874, 2262
NlaIV GGNNCC 3 cut(s) 130, 834, 880
NmeAIII GCCGAG 1 cut(s) 1600
NmuCI GTSAC 3 cut(s) 1196, 2025, 2365
NsiI ATGCAT 1 cut(s) 563
NspI RCATGY 4 cut(s) 1008, 1182, 1747, 2026
NspV TTCGAA 1 cut(s) 1819
PagI TCATGA 4 cut(s) 1261, 1633, 1641, 2176
PaqCI CACCTGC 1 cut(s) 844
PciI ACATGT 3 cut(s) 1004, 1178, 2022
PciSI GCTCTTC 1 cut(s) 17
PfeI GAWTC 5 cut(s) 236, 248, 769, 1821, 2257
Pfl23II CGTACG 1 cut(s) 2324
PkrI GCNGC 9 cut(s) 352, 506, 579, 792, 795, 983, 1339, 1342, 1504
PleI GAGTC 5 cut(s) 638, 767, 1259, 1772, 2167
PpsI GAGTC 5 cut(s) 638, 767, 1259, 1772, 2167
Ppu21I YACGTR 1 cut(s) 2324
PpuMI RGGWCCY 1 cut(s) 129
PscI ACATGT 3 cut(s) 1004, 1178, 2022
PsiI TTATAA 2 cut(s) 1430, 1563
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 4 cut(s) 460, 515, 541, 667
PspGI CCWGG 4 cut(s) 460, 515, 541, 667
PspLI CGTACG 1 cut(s) 2324
PspN4I GGNNCC 3 cut(s) 130, 834, 880
PspPI GGNCC 4 cut(s) 129, 869, 972, 1311
PspPPI RGGWCCY 1 cut(s) 129
PstI CTGCAG 2 cut(s) 582, 1342
PstNI CAGNNNCTG 1 cut(s) 981
PsuI RGATCY 2 cut(s) 404, 1891
PvuII CAGCTG 3 cut(s) 1337, 1343, 2231
RsaI GTAC 9 cut(s) 61, 81, 191, 274, 632, 1028, 1742, 1848, 2326
RsaNI GTAC 9 cut(s) 60, 80, 190, 273, 631, 1027, 1741, 1847, 2325
RseI CAYNNNNRTG 2 cut(s) 910, 1003
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 3 cut(s) 933, 1071, 1202
SatI GCNGC 9 cut(s) 351, 505, 578, 791, 794, 982, 1338, 1341, 1503
Sau96I GGNCC 4 cut(s) 129, 869, 972, 1311
SchI GAGTC 5 cut(s) 638, 768, 1259, 1772, 2167
ScrFI CCNGG 5 cut(s) 255, 462, 517, 543, 669
SfaNI GCATC 2 cut(s) 337, 1909
SfcI CTRYAG 2 cut(s) 578, 1338
SfuI TTCGAA 1 cut(s) 1819
SinI GGWCC 4 cut(s) 129, 869, 972, 1311
SmiMI CAYNNNNRTG 2 cut(s) 910, 1003
SmlI CTYRAG 3 cut(s) 646, 1839, 2267
SmoI CTYRAG 3 cut(s) 646, 1839, 2267
SsiI CCGC 2 cut(s) 242, 867
SspMI CTAG 4 cut(s) 299, 1211, 1274, 1869
StyD4I CCNGG 5 cut(s) 253, 460, 515, 541, 667
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 6 cut(s) 214, 731, 825, 848, 912, 2115
TaiI ACGT 2 cut(s) 306, 2326
TatI WGTACW 2 cut(s) 630, 1740
TfiI GAWTC 5 cut(s) 236, 248, 769, 1821, 2257
Tru1I TTAA 3 cut(s) 933, 1071, 1202
Tru9I TTAA 3 cut(s) 933, 1071, 1202
TscAI CASTG 5 cut(s) 103, 736, 753, 982, 2139
TseFI GTSAC 3 cut(s) 1196, 2025, 2365
TseI GCWGC 9 cut(s) 350, 504, 577, 790, 793, 981, 1337, 1340, 1502
Tsp45I GTSAC 3 cut(s) 1196, 2025, 2365
TspGWI ACGGA 3 cut(s) 395, 1172, 2242
TspRI CASTG 5 cut(s) 103, 736, 753, 982, 2139
VpaK11BI GGWCC 4 cut(s) 129, 869, 972, 1311
XagI CCTNNNNNAGG 1 cut(s) 1306
XapI RAATTY 6 cut(s) 160, 941, 1384, 1569, 1962, 2329
XbaI TCTAGA 1 cut(s) 1868
XceI RCATGY 4 cut(s) 1008, 1182, 1747, 2026
XspI CTAG 4 cut(s) 299, 1211, 1274, 1869
ZraI GACGTC 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.