Rh1AG402000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000114
Physical Location & Seq
Reverse (-)
62869572 .. 62869898
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG402000.1

Sequence Viewer

Length: 327 bp
ATGTTGTTTGAGACGAAGGTGTGGCTGGTCTTCGCCGTGGCGGTGATCGTCTCTCTGCGAATCTCTTTCGGTTCCTCCGACGAACCACGCCGTCCGATTCAGACCGGATGGTTTGCAGAACGGCGGCAGGGCTCTGTAGACGACTCCGAGCGCCCCACAGTCTTCCTCTTCCTCGGCCTCGATCTCGACCAGATCGATGTTATCGGCTGCGACGATAAGCACCTGGCCATAGAGAAGCTGGCAGAGCTTGGTGTTGTATCTTCTTCCCGGCCTTGGAGAGATTGGCCATTGGCTTCCGGTTCCGATTCCGAAGAGAGAGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.12

Weight (kDa)

4.58

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AciI CCGC 2 cut(s) 41, 124
AcoI YGGCCR 2 cut(s) 225, 284
AfiI CCNNNNNNNGG 1 cut(s) 273
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 238, 247
AluI AGCT 2 cut(s) 238, 247
Alw26I GTCTC 2 cut(s) 5, 55
AoxI GGCC 4 cut(s) 175, 225, 269, 284
ApeKI GCWGC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 55
BalI TGGCCA 2 cut(s) 227, 286
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 2 cut(s) 22, 154
BbvI GCAGC 1 cut(s) 194
BccI CCATC 2 cut(s) 102, 314
BceAI ACGGC 3 cut(s) 20, 75, 137
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 5, 55
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 154
BisI GCNGC 2 cut(s) 125, 208
BlsI GCNGC 2 cut(s) 126, 209
Bme1390I CCNGG 2 cut(s) 224, 268
BmiI GGNNCC 2 cut(s) 73, 301
BmrFI CCNGG 2 cut(s) 224, 268
BpiI GAAGAC 2 cut(s) 22, 154
BpuMI CCSGG 1 cut(s) 268
Bsa29I ATCGAT 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 36, 172, 272
BsaWI WCCGGW 2 cut(s) 104, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 3 cut(s) 36, 172, 272
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 4 cut(s) 177, 227, 271, 286
BshVI ATCGAT 1 cut(s) 195
BsiSI CCGG 3 cut(s) 105, 268, 297
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 2 cut(s) 5, 55
BsmBI CGTCTC 2 cut(s) 5, 55
BsnI GGCC 4 cut(s) 177, 227, 271, 286
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 45, 181, 192
BspACI CCGC 2 cut(s) 41, 124
BspANI GGCC 4 cut(s) 177, 227, 271, 286
BspDI ATCGAT 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 73, 301
BssECI CCNNGG 3 cut(s) 36, 172, 272
BssMI GATC 3 cut(s) 45, 181, 192
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 173, 306
BstC8I GCNNGC 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 48, 184, 195
BstMAI GTCTC 2 cut(s) 5, 55
BstMBI GATC 3 cut(s) 45, 181, 192
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 222, 266
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 2 cut(s) 22, 154
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 4 cut(s) 177, 227, 271, 286
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 153
ClaI ATCGAT 1 cut(s) 195
DpnI GATC 3 cut(s) 47, 183, 194
DpnII GATC 3 cut(s) 45, 181, 192
EaeI YGGCCR 2 cut(s) 225, 284
Eam1104I CTCTTC 2 cut(s) 173, 306
EarI CTCTTC 2 cut(s) 173, 306
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 2 cut(s) 5, 55
FaiI YATR 1 cut(s) 230
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 125, 208
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 125, 208
GlaI GCGC 1 cut(s) 152
GluI GCNGC 2 cut(s) 125, 208
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 4 cut(s) 177, 227, 271, 286
HapII CCGG 3 cut(s) 105, 268, 297
HhaI GCGC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 4 cut(s) 60, 97, 143, 305
HpaII CCGG 3 cut(s) 105, 268, 297
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 6 cut(s) 79, 96, 102, 148, 304, 310
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 83, 215
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 45, 181, 192
LpnPI CCDG 9 cut(s) 11, 113, 118, 203, 209, 224, 236, 281, 310
Lsp1109I GCAGC 1 cut(s) 194
MalI GATC 3 cut(s) 47, 183, 194
MboI GATC 3 cut(s) 45, 181, 192
MboII GAAGA 6 cut(s) 22, 154, 160, 252, 255, 323
MhlI GDGCHC 1 cut(s) 134
MlsI TGGCCA 2 cut(s) 227, 286
MluNI TGGCCA 2 cut(s) 227, 286
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 4 cut(s) 85, 176, 182, 188
Mox20I TGGCCA 2 cut(s) 227, 286
MscI TGGCCA 2 cut(s) 227, 286
Msp20I TGGCCA 2 cut(s) 227, 286
MspI CCGG 3 cut(s) 105, 268, 297
MspR9I CCNGG 2 cut(s) 224, 268
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 268
NdeII GATC 3 cut(s) 45, 181, 192
NlaIV GGNNCC 2 cut(s) 73, 301
NmeAIII GCCGAG 1 cut(s) 153
PcsI WCGNNNNNNNCGW 3 cut(s) 75, 192, 210
PfeI GAWTC 3 cut(s) 60, 97, 305
PkrI GCNGC 2 cut(s) 126, 209
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 73, 301
SatI GCNGC 2 cut(s) 125, 208
Sau3AI GATC 3 cut(s) 45, 181, 192
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 224, 268
SduI GDGCHC 1 cut(s) 134
SetI ASST 4 cut(s) 21, 225, 240, 249
SfcI CTRYAG 1 cut(s) 135
SsiI CCGC 2 cut(s) 41, 124
StyD4I CCNGG 2 cut(s) 222, 266
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 3 cut(s) 180, 186, 195
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 3 cut(s) 60, 97, 305
TseI GCWGC 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.