RLG00000023606

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000114
Physical Location & Seq
Forward (+)
25910764 .. 25914415
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023606

Sequence Viewer

Length: 1017 bp
ATGTCCATAACAGGCGTCGCCATTGTCCAAAACCGGCTCCAACAAAACCTACTGGCCTCCGCCGTTTCTGTGTCTTTTGCACGACGACCCGAACCCGGACTTCTACAACTTCGGCGACGTGGCGAGCTTGCCTCATCGTTCTCACTCACTCGTTTCCTTTGCTTCAGTCTTCTTCGGCTGCTCTTTTTCAGGAAGGAAACTACTCGGTATTGGAGAAGTTCTATGTACATCGGCAAGGATACAAGAACAGATTTTCAAAATCCAGGTGGAACTGCGTCTTTCCTCACTCACAACTTTGATGTTGATGAGGTTTATCTTGCTTACAGTGTCTCAGATAGCTCAGTAAAATTGAGGGTCTGGTTGAATCCTACAGGGCAATTTATACTGCTGCTGTGGCAGGGTTCTAGTAAAACGTGGTTGGAACAGGGGAATTTACCTGCTGATAACTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCATAGAGGTGAACCACTGTCATCATCATGCAAGTGTTTGATTGGTTTTACACCCAAGTTTCCTAACCAATCAGCTGTGGGAAATTGGTCCAGTGGCTGCGTTAGGGAAAAGATGTTAACATGTGGTAATGGCATACAAGGTAGCTTTTCAAAGCTTGAAAATGTGAGACTGCCAGATCATTCTGTTCTGTTAGAGAATAGGAGTATCAGCCAGTGTCACTTTGATTGTCAGCAGAACTGTTCTTGCACAGCTTATGCGCATGTAAATGACACAGACGGAAGTGATATTGGGAAATGTTTGGCATGGTTTGGCGAATTACTGGATCTAGTAGAGAATCACTACAATTCTGAATGTGACATCTATATTCGTGTTCACGGCTCTGAACCAGGCAAGATGGGTCTTTCTGTTAATTCCTTGAAGCGGACTCTTTCCACGACAAGCTGCTTCCCTGCATTGCTCTTTCAGGAGGCTTTGAAATGTGCATTGTGGCTTGCCGCTTTGGCACACTTCTGGAATAATGAAGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

339

Amino Acids

37.8

Weight (kDa)

7.06

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 71 - 182 2.4e-18 S-locus glycoprotein domain
PAN_2 PF08276 209 - 271 1.7e-13 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 744
Acc36I ACCTGC 1 cut(s) 445
AciI CCGC 4 cut(s) 60, 468, 907, 981
AclWI GGATC 1 cut(s) 816
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 148
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 95, 906
AflIII ACRYGT 1 cut(s) 605
AgsI TTSAA 6 cut(s) 257, 364, 636, 644, 904, 961
AjiI CACGTC 1 cut(s) 119
AjnI CCWGG 2 cut(s) 262, 871
AluBI AGCT 7 cut(s) 127, 339, 560, 630, 640, 737, 927
AluI AGCT 7 cut(s) 127, 339, 560, 630, 640, 737, 927
Alw26I GTCTC 2 cut(s) 334, 646
AlwI GGATC 1 cut(s) 816
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 4 cut(s) 178, 388, 582, 927
ApoI RAATTY 1 cut(s) 430
AspLEI GCGC 1 cut(s) 745
AspS9I GGNCC 2 cut(s) 470, 573
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 506
AvaII GGWCC 2 cut(s) 470, 573
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 4 cut(s) 165, 375, 569, 914
BccI CCATC 1 cut(s) 874
BceAI ACGGC 2 cut(s) 47, 877
BciT130I CCWGG 2 cut(s) 264, 873
BciVI GTATCC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 334, 646
BfaI CTAG 2 cut(s) 405, 812
BfmI CTRYAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 445
BfuI GTATCC 1 cut(s) 232
BglI GCCNNNNNGGC 1 cut(s) 986
BisI GCNGC 5 cut(s) 179, 389, 583, 928, 981
BlsI GCNGC 5 cut(s) 180, 390, 584, 929, 982
Bme1390I CCNGG 3 cut(s) 96, 264, 873
Bme18I GGWCC 2 cut(s) 470, 573
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 470, 573
BmiI GGNNCC 2 cut(s) 38, 472
BmrFI CCNGG 3 cut(s) 96, 264, 873
BpiI GAAGAC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpuMI CCSGG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 906
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 4 cut(s) 57, 576, 697, 810
Bse3DI GCAATG 2 cut(s) 463, 938
BseBI CCWGG 2 cut(s) 264, 873
BseLI CCNNNNNNNGG 2 cut(s) 95, 906
BseMI GCAATG 2 cut(s) 463, 938
BseMII CTCAG 2 cut(s) 345, 354
BseNI ACTGG 4 cut(s) 57, 576, 697, 810
BseXI GCAGC 4 cut(s) 165, 375, 569, 914
BshFI GGCC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 34, 96
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 95, 906
BsmAI GTCTC 2 cut(s) 334, 646
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 2 cut(s) 661, 808
BspACI CCGC 4 cut(s) 60, 468, 907, 981
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 344, 353
BspLI GGNNCC 2 cut(s) 38, 472
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 1 cut(s) 816
BsrDI GCAATG 2 cut(s) 463, 938
BsrFI RCCGGY 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 4 cut(s) 57, 576, 697, 810
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 2 cut(s) 661, 808
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 264, 873
Bst4CI ACNGT 4 cut(s) 326, 449, 504, 725
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 125, 129, 978
BstDEI CTNAG 2 cut(s) 331, 340
BstHHI GCGC 1 cut(s) 745
BstKTI GATC 2 cut(s) 664, 811
BstMAI GTCTC 2 cut(s) 334, 646
BstMBI GATC 2 cut(s) 661, 808
BstMWI GCNNNNNNNGC 2 cut(s) 394, 986
BstNI CCWGG 2 cut(s) 264, 873
BstNSI RCATGY 2 cut(s) 609, 749
BstSCI CCNGG 3 cut(s) 94, 262, 871
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 165, 375, 569, 914
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 808
BstYI RGATCY 1 cut(s) 808
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 56
BtrI CACGTC 1 cut(s) 119
BtsIMutI CAGTG 4 cut(s) 331, 500, 583, 704
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 3 cut(s) 125, 129, 978
CaiI CAGNNNCTG 1 cut(s) 582
CfoI GCGC 1 cut(s) 745
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 470, 573
CseI GACGC 2 cut(s) 4, 264
Csp6I GTAC 1 cut(s) 226
CviAII CATG 4 cut(s) 513, 606, 746, 789
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 331, 340
DpnI GATC 2 cut(s) 663, 810
DpnII GATC 2 cut(s) 661, 808
EciI GGCGGA 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 470, 573
Eco57I CTGAAG 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 262, 871
FaeI CATG 4 cut(s) 516, 609, 749, 792
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 512, 605, 745, 788
Fnu4HI GCNGC 5 cut(s) 179, 389, 583, 928, 981
Fsp4HI GCNGC 5 cut(s) 179, 389, 583, 928, 981
FspAI RTGCGCAY 1 cut(s) 744
FspBI CTAG 2 cut(s) 405, 812
FspI TGCGCA 1 cut(s) 744
GlaI GCGC 1 cut(s) 744
GluI GCNGC 5 cut(s) 179, 389, 583, 928, 981
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 34, 96
HgaI GACGC 2 cut(s) 4, 264
HhaI GCGC 1 cut(s) 745
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 516, 609, 749, 792
Hin6I GCGC 1 cut(s) 743
HinP1I GCGC 1 cut(s) 743
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 3 cut(s) 364, 820, 910
HpaI GTTAAC 1 cut(s) 603
HpaII CCGG 2 cut(s) 34, 96
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 3 cut(s) 497, 603, 859
Hpy188I TCNGA 3 cut(s) 334, 835, 868
Hpy188III TCNNGA 3 cut(s) 190, 950, 997
Hpy8I GTNNAC 3 cut(s) 497, 603, 859
Hpy99I CGWCG 3 cut(s) 20, 87, 120
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 4 cut(s) 326, 449, 504, 725
HpyCH4IV ACGT 2 cut(s) 118, 413
HpyCH4V TGCA 5 cut(s) 80, 516, 732, 938, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 394, 986
HpyF3I CTNAG 2 cut(s) 331, 340
HpySE526I ACGT 2 cut(s) 118, 413
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 516, 609, 749, 792
HspAI GCGC 1 cut(s) 743
KspAI GTTAAC 1 cut(s) 603
Kzo9I GATC 2 cut(s) 661, 808
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 4 cut(s) 165, 375, 569, 914
MaeI CTAG 2 cut(s) 405, 812
MaeII ACGT 2 cut(s) 118, 413
MaeIII GTNAC 2 cut(s) 701, 839
MalI GATC 2 cut(s) 663, 810
MboI GATC 2 cut(s) 661, 808
MboII GAAGA 2 cut(s) 161, 164
MflI RGATCY 1 cut(s) 808
MluCI AATT 7 cut(s) 347, 377, 430, 568, 800, 829, 895
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 2 cut(s) 64, 399
MnlI CCTC 7 cut(s) 67, 142, 293, 301, 345, 485, 946
MseI TTAA 2 cut(s) 602, 894
MslI CAYNNNNRTG 4 cut(s) 492, 511, 517, 750
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 2 cut(s) 34, 96
MspR9I CCNGG 3 cut(s) 96, 264, 873
MvaI CCWGG 2 cut(s) 264, 873
MwoI GCNNNNNNNGC 2 cut(s) 394, 986
NciI CCSGG 1 cut(s) 96
NdeII GATC 2 cut(s) 661, 808
NlaIII CATG 4 cut(s) 516, 609, 749, 792
NlaIV GGNNCC 2 cut(s) 38, 472
NmuCI GTSAC 2 cut(s) 701, 839
NsbI TGCGCA 1 cut(s) 744
NspI RCATGY 2 cut(s) 609, 749
PciI ACATGT 1 cut(s) 605
PfeI GAWTC 2 cut(s) 364, 820
PkrI GCNGC 5 cut(s) 180, 390, 584, 929, 982
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
PscI ACATGT 1 cut(s) 605
Psp6I CCWGG 2 cut(s) 262, 871
PspGI CCWGG 2 cut(s) 262, 871
PspN4I GGNNCC 2 cut(s) 38, 472
PspPI GGNCC 2 cut(s) 470, 573
PstNI CAGNNNCTG 1 cut(s) 582
PsuI RGATCY 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 4 cut(s) 492, 511, 517, 750
SaqAI TTAA 2 cut(s) 602, 894
SatI GCNGC 5 cut(s) 179, 389, 583, 928, 981
Sau3AI GATC 2 cut(s) 661, 808
Sau96I GGNCC 2 cut(s) 470, 573
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 3 cut(s) 96, 264, 873
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 2 cut(s) 470, 573
SmiMI CAYNNNNRTG 4 cut(s) 492, 511, 517, 750
Sse9I AATT 7 cut(s) 347, 377, 430, 568, 800, 829, 895
SsiI CCGC 4 cut(s) 60, 468, 907, 981
SspMI CTAG 2 cut(s) 405, 812
StyD4I CCNGG 3 cut(s) 94, 262, 871
TaaI ACNGT 4 cut(s) 326, 449, 504, 725
TaiI ACGT 2 cut(s) 121, 416
TasI AATT 7 cut(s) 347, 377, 430, 568, 800, 829, 895
TatI WGTACW 1 cut(s) 225
TauI GCSGC 1 cut(s) 983
TfiI GAWTC 2 cut(s) 364, 820
Tru1I TTAA 2 cut(s) 602, 894
Tru9I TTAA 2 cut(s) 602, 894
TscAI CASTG 4 cut(s) 331, 507, 583, 704
TseFI GTSAC 2 cut(s) 701, 839
TseI GCWGC 4 cut(s) 178, 388, 582, 927
Tsp45I GTSAC 2 cut(s) 701, 839
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 4 cut(s) 331, 507, 583, 704
VpaK11BI GGWCC 2 cut(s) 470, 573
XapI RAATTY 1 cut(s) 430
XceI RCATGY 2 cut(s) 609, 749
XspI CTAG 2 cut(s) 405, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.