Rh5CG477600

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
66654838 .. 66657085
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG477600.1

Sequence Viewer

Length: 840 bp
ATGGACGCCACCCAACACTTATGTTGTCAAACCATCCTACCTCTTTTTGGAATAGGCCTTGCCCAATACCTGAAAGCCACCGGTGTTTTCCTGCTCCCCAACATAGCCACCTCAACTTCTTGCCTCCAAAACTTACAGTCCAGGCTCACCTCTCTCTCCCTTCCTTCCGATCTTGTTTCTTATTGTTATAATCCTTCACAATATGTCACCAGCCCAAGTTTCTGTGCCGGTATTAAGACTTCCCAAGATTGGATCTCCAAGCTTAATCAGACTACTGCATTTGACTCTGATTGTAGCTCAGACCTCACTTCTCTCTCATCCTGCAGTGCTTGCTTAGAGGCCGGGATTAAGGTTCACAAACAATTGATGGCCCTTGATGGCAACACTTCTCACTCTGGAAATTGTTTTTTCTATACGGTGCTTTATGCAGCAGCTTCATTTGACTCTGAACCCGGAAGTGATGGTGCCATGACCTGCATTTTGGGGTTGTCAATAACTGCGGATTCTCCTGTGGCTTCACCAAAGAAGAGCAAGAAGAGAAATACCACTCTCGCTTGGAAATTATGGAAAGAAGGTAAAGGAATGGAGGTAATTGATGCATCAATGAGAGAAACATGTCTCCCTCATGAAGCTTTAAGATGTATCCATGTTGCATTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGACCAGCAATGTCTTCCGTAGTTCACATGCTGGCCAATGAAGCAATACCACTTCCACTCTTCAAAGAACCTGCATTTTCAACGGAGAGTACTTTTTGTGATGTTGGTTCTTCTCCATCAAATGGAGTCACCATTACTCTCCCAGAAGGTCGATAG

Protein Analysis

279

Amino Acids

29.89

Weight (kDa)

5.65

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 4 - 136 8.4e-33 SPARK
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
Acc36I ACCTGC 2 cut(s) 482, 763
AccB1I GGYRCC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 806
AciI CCGC 1 cut(s) 500
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 775
AfiI CCNNNNNNNGG 3 cut(s) 47, 249, 806
AflIII ACRYGT 1 cut(s) 614
AgeI ACCGGT 1 cut(s) 80
AgsI TTSAA 3 cut(s) 668, 748, 765
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 6 cut(s) 262, 297, 434, 632, 674, 680
AluI AGCT 6 cut(s) 262, 297, 434, 632, 674, 680
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 1 cut(s) 260
AoxI GGCC 4 cut(s) 55, 339, 369, 717
ApeKI GCWGC 2 cut(s) 428, 431
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
AsiGI ACCGGT 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 370
AsuC2I CCSGG 2 cut(s) 343, 453
AsuHPI GGTGA 4 cut(s) 139, 199, 510, 805
BalI TGGCCA 1 cut(s) 719
BanI GGYRCC 1 cut(s) 464
BarI GAAGNNNNNNTAC 2 cut(s) 223, 255
BbsI GAAGAC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 440, 443
BccI CCATC 5 cut(s) 41, 361, 371, 455, 808
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 1 cut(s) 653
BcnI CCSGG 2 cut(s) 343, 453
BcoDI GTCTC 1 cut(s) 623
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 2 cut(s) 482, 763
BfuI GTATCC 1 cut(s) 653
BisI GCNGC 2 cut(s) 429, 432
BlsI GCNGC 2 cut(s) 430, 433
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 3 cut(s) 142, 343, 453
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 3 cut(s) 142, 343, 453
BmsI GCATC 2 cut(s) 586, 608
BpiI GAAGAC 1 cut(s) 690
BpmI CTGGAG 1 cut(s) 660
BpuMI CCSGG 2 cut(s) 343, 453
BsaHI GRCGYC 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 249, 806
Bse118I RCCGGY 2 cut(s) 80, 227
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 33, 317
BseLI CCNNNNNNNGG 3 cut(s) 47, 249, 806
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 440, 443
BshFI GGCC 4 cut(s) 57, 341, 371, 719
BshNI GGYRCC 1 cut(s) 464
BshTI ACCGGT 1 cut(s) 80
BsiSI CCGG 4 cut(s) 81, 228, 342, 453
BslI CCNNNNNNNGG 3 cut(s) 47, 249, 806
BsmAI GTCTC 1 cut(s) 623
BsnI GGCC 4 cut(s) 57, 341, 371, 719
Bsp143I GATC 3 cut(s) 169, 252, 682
BspACI CCGC 1 cut(s) 500
BspANI GGCC 4 cut(s) 57, 341, 371, 719
BspCNI CTCAG 1 cut(s) 311
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 326
BspMI ACCTGC 2 cut(s) 482, 763
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 521
BspT107I GGYRCC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 80, 227
BssAI RCCGGY 2 cut(s) 80, 227
BssMI GATC 3 cut(s) 169, 252, 682
BssNI GRCGYC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 138, 418
Bst6I CTCTTC 3 cut(s) 521, 530, 749
BstACI GRCGYC 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 331, 717
BstDEI CTNAG 2 cut(s) 298, 334
BstF5I GGATG 2 cut(s) 33, 317
BstKTI GATC 3 cut(s) 172, 255, 685
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 3 cut(s) 169, 252, 682
BstMWI GCNNNNNNNGC 2 cut(s) 330, 725
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 2 cut(s) 618, 715
BstSCI CCNGG 3 cut(s) 140, 341, 451
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 440, 443
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 4 cut(s) 57, 341, 371, 719
BtsCI GGATG 2 cut(s) 33, 317
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
BveI ACCTGC 2 cut(s) 482, 763
Cac8I GCNNGC 2 cut(s) 331, 717
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 2 cut(s) 80, 227
Cfr13I GGNCC 1 cut(s) 370
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 774
CspAI ACCGGT 1 cut(s) 80
CviAII CATG 5 cut(s) 469, 615, 626, 647, 712
CviQI GTAC 1 cut(s) 774
DdeI CTNAG 2 cut(s) 298, 334
DpnI GATC 3 cut(s) 171, 254, 684
DpnII GATC 3 cut(s) 169, 252, 682
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 3 cut(s) 521, 530, 749
EarI CTCTTC 3 cut(s) 521, 530, 749
Eco147I AGGCCT 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 140
EcoT22I ATGCAT 1 cut(s) 601
FaeI CATG 5 cut(s) 472, 618, 629, 650, 715
FatI CATG 5 cut(s) 468, 614, 625, 646, 711
Fnu4HI GCNGC 2 cut(s) 429, 432
FokI GGATG 2 cut(s) 20, 304
Fsp4HI GCNGC 2 cut(s) 429, 432
GluI GCNGC 2 cut(s) 429, 432
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 4 cut(s) 57, 341, 371, 719
HapII CCGG 4 cut(s) 81, 228, 342, 453
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 5 cut(s) 472, 618, 629, 650, 715
HindIII AAGCTT 2 cut(s) 260, 630
HinfI GANTC 4 cut(s) 284, 443, 503, 810
HpaII CCGG 4 cut(s) 81, 228, 342, 453
HphI GGTGA 4 cut(s) 139, 199, 510, 805
Hpy166II GTNNAC 2 cut(s) 355, 709
Hpy188I TCNGA 5 cut(s) 169, 270, 289, 301, 448
Hpy188III TCNNGA 3 cut(s) 396, 626, 668
Hpy8I GTNNAC 2 cut(s) 355, 709
HpyAV CCTTC 5 cut(s) 170, 174, 204, 566, 824
HpyCH4III ACNGT 2 cut(s) 138, 418
HpyCH4V TGCA 7 cut(s) 278, 324, 428, 477, 599, 653, 758
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 725
HpyF3I CTNAG 2 cut(s) 298, 334
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 5 cut(s) 472, 618, 629, 650, 715
Kzo9I GATC 3 cut(s) 169, 252, 682
LguI GCTCTTC 1 cut(s) 521
LmnI GCTCC 2 cut(s) 99, 679
Lsp1109I GCAGC 2 cut(s) 440, 443
LweI GCATC 2 cut(s) 586, 608
MaeIII GTNAC 2 cut(s) 205, 811
MalI GATC 3 cut(s) 171, 254, 684
MboI GATC 3 cut(s) 169, 252, 682
MboII GAAGA 5 cut(s) 538, 547, 690, 736, 786
MfeI CAATTG 1 cut(s) 362
MflI RGATCY 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 4 cut(s) 362, 400, 560, 591
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 3 cut(s) 278, 437, 819
MnlI CCTC 8 cut(s) 51, 121, 134, 160, 314, 331, 580, 633
Mox20I TGGCCA 1 cut(s) 719
Mph1103I ATGCAT 1 cut(s) 601
MscI TGGCCA 1 cut(s) 719
MseI TTAA 4 cut(s) 234, 264, 348, 635
MslI CAYNNNNRTG 1 cut(s) 658
Msp20I TGGCCA 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 4 cut(s) 81, 228, 342, 453
MspR9I CCNGG 3 cut(s) 142, 343, 453
MunI CAATTG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 330, 725
NciI CCSGG 2 cut(s) 343, 453
NdeII GATC 3 cut(s) 169, 252, 682
NlaIII CATG 5 cut(s) 472, 618, 629, 650, 715
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 2 cut(s) 205, 811
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 2 cut(s) 618, 715
PagI TCATGA 1 cut(s) 625
PceI AGGCCT 1 cut(s) 57
PciI ACATGT 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 503
PflMI CCANNNNNTGG 1 cut(s) 806
PinAI ACCGGT 1 cut(s) 80
PkrI GCNGC 2 cut(s) 430, 433
PleI GAGTC 3 cut(s) 278, 437, 818
PpsI GAGTC 3 cut(s) 278, 437, 818
PscI ACATGT 1 cut(s) 614
PsiI TTATAA 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 1 cut(s) 370
PstI CTGCAG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 1 cut(s) 775
RsaNI GTAC 1 cut(s) 774
RseI CAYNNNNRTG 1 cut(s) 658
SapI GCTCTTC 1 cut(s) 521
SaqAI TTAA 4 cut(s) 234, 264, 348, 635
SatI GCNGC 2 cut(s) 429, 432
Sau3AI GATC 3 cut(s) 169, 252, 682
Sau96I GGNCC 1 cut(s) 370
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 3 cut(s) 278, 437, 819
ScrFI CCNGG 3 cut(s) 142, 343, 453
SfaNI GCATC 2 cut(s) 586, 608
SfcI CTRYAG 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 658
Sse9I AATT 4 cut(s) 362, 400, 560, 591
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 1 cut(s) 500
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 140, 341, 451
TaaI ACNGT 2 cut(s) 138, 418
TaqI TCGA 2 cut(s) 685, 835
TasI AATT 4 cut(s) 362, 400, 560, 591
TatI WGTACW 1 cut(s) 773
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 4 cut(s) 234, 264, 348, 635
Tru9I TTAA 4 cut(s) 234, 264, 348, 635
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 205, 811
TseI GCWGC 2 cut(s) 428, 431
Tsp45I GTSAC 2 cut(s) 205, 811
TspDTI ATGAA 3 cut(s) 426, 642, 738
TspGWI ACGGA 2 cut(s) 691, 782
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 806
XceI RCATGY 2 cut(s) 618, 715
ZrmI AGTACT 1 cut(s) 775
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.