Rh5BG455500

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
72949589 .. 72950431
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG455500.1

Sequence Viewer

Length: 843 bp
ATGAAACGAAGAATGTGGTACTTCTTGGTGTTGTTTCTAGTTCTACTTCCTCTCTCAGCTAGCCAATCTCTAAAGTCAACCACGGTTAACAGAACAACATGCCCTATGGATCTCAGCTATGTTCTTAGAATCCCCTTCGATTCTTCATCATGCAAAAACTTTGATTCCCAGACCAAAATGGACGCCACCCAACACTTATGTTGTCAAACCATCCTACCTCTTTTTGGAATAGGCCTTGCCCAATACCTGAAAGCCACCGGTGTTTTCCTGCTCCCCAACATAGCCACCTCAACTTCTTGCCTCCAAAACTTACAGTCCAGGCTCACCTCTCTCTCCCTTCCTTCCGATCTTGTTTCTTATTGTTATAATCCTTCACAATATGTCACCAGCCCAAGTTTCTGTGCCGGTATTAAGACTTCCCAAGATTGGATCTCCAAGCTTAATCAGACTACTGCATTTGACTCTGATTGTAGCTCAGACCTCACTTCTCTCTCATCCTGCAGTGCTTGCTTAGAGGCCGGGATTAAGGTTCACAAACAATTGATGGCCCTTGATGGCAACACTTCTCACTCTGGAAATTGTTTTTTCTATACGGTGCTTTATGCAGCAGCTTCATTTGACTCTGAACCCGGAAGTGATGGTGCCATGACCTGCATTTTGGGGTTGTCAATAACTGCGGATTCTCCTGTGGCTTCACCAAAGAAGAGCAAGAAGAGAAATACCACTCTCGTAATTGCAATAGTTTCTGCATCAACAGGATTGCTTACAATAGTTTTTCTTTACTTTTTATGGAAGAAAACTTTCGGAAAGCCAAGGTATTGCTCTCACTCTCATCTATCCTAG

Protein Analysis

280

Amino Acids

30.56

Weight (kDa)

8.84

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 31 - 195 5.9e-40 SPARK
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc36I ACCTGC 1 cut(s) 659
AccB1I GGYRCC 1 cut(s) 641
AciI CCGC 1 cut(s) 677
AclWI GGATC 2 cut(s) 117, 437
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 224, 426
AgeI ACCGGT 1 cut(s) 257
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 5 cut(s) 59, 117, 439, 474, 611
AluI AGCT 5 cut(s) 59, 117, 439, 474, 611
AlwI GGATC 2 cut(s) 117, 437
AoxI GGCC 3 cut(s) 232, 516, 546
ApeKI GCWGC 2 cut(s) 605, 608
ArsI GACNNNNNNTTYG 2 cut(s) 640, 672
AsiGI ACCGGT 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 800
AspS9I GGNCC 1 cut(s) 547
AsuC2I CCSGG 2 cut(s) 520, 630
AsuHPI GGTGA 3 cut(s) 316, 376, 687
AsuNHI GCTAGC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 641
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BbvI GCAGC 2 cut(s) 617, 620
BccI CCATC 4 cut(s) 218, 538, 548, 632
BciT130I CCWGG 1 cut(s) 319
BcnI CCSGG 2 cut(s) 520, 630
BfaI CTAG 3 cut(s) 38, 60, 841
BfmI CTRYAG 1 cut(s) 499
BfuAI ACCTGC 1 cut(s) 659
BisI GCNGC 2 cut(s) 606, 609
BlsI GCNGC 2 cut(s) 607, 610
Bme1390I CCNGG 3 cut(s) 319, 520, 630
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 3 cut(s) 319, 520, 630
BmsI GCATC 1 cut(s) 758
BmtI GCTAGC 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 520, 630
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 81, 812
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 426
Bse118I RCCGGY 2 cut(s) 257, 404
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 81, 812
BseGI GGATG 2 cut(s) 210, 494
BseLI CCNNNNNNNGG 2 cut(s) 224, 426
BseMII CTCAG 3 cut(s) 69, 127, 489
BseXI GCAGC 2 cut(s) 617, 620
BshFI GGCC 3 cut(s) 234, 518, 548
BshNI GGYRCC 1 cut(s) 641
BshTI ACCGGT 1 cut(s) 257
BsiSI CCGG 4 cut(s) 258, 405, 519, 630
BslI CCNNNNNNNGG 2 cut(s) 224, 426
BsnI GGCC 3 cut(s) 234, 518, 548
Bsp143I GATC 3 cut(s) 109, 346, 429
BspACI CCGC 1 cut(s) 677
BspANI GGCC 3 cut(s) 234, 518, 548
BspCNI CTCAG 3 cut(s) 68, 126, 488
BspLI GGNNCC 1 cut(s) 643
BspMAI CTGCAG 1 cut(s) 503
BspMI ACCTGC 1 cut(s) 659
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 2 cut(s) 117, 437
BspQI GCTCTTC 1 cut(s) 698
BspT107I GGYRCC 1 cut(s) 641
BsrFI RCCGGY 2 cut(s) 257, 404
BssAI RCCGGY 2 cut(s) 257, 404
BssECI CCNNGG 2 cut(s) 81, 812
BssMI GATC 3 cut(s) 109, 346, 429
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 812
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 85, 315, 595
Bst6I CTCTTC 2 cut(s) 698, 707
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 61, 508
BstDEI CTNAG 5 cut(s) 55, 113, 125, 475, 511
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 210, 494
BstKTI GATC 3 cut(s) 112, 349, 432
BstMBI GATC 3 cut(s) 109, 346, 429
BstMWI GCNNNNNNNGC 1 cut(s) 507
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 317, 518, 628
BstSFI CTRYAG 1 cut(s) 499
BstV1I GCAGC 2 cut(s) 617, 620
BstX2I RGATCY 2 cut(s) 109, 429
BstYI RGATCY 2 cut(s) 109, 429
BsuRI GGCC 3 cut(s) 234, 518, 548
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 210, 494
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 1 cut(s) 508
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 2 cut(s) 61, 508
Cfr10I RCCGGY 2 cut(s) 257, 404
Cfr13I GGNCC 1 cut(s) 547
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 19
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 3 cut(s) 99, 150, 646
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 5 cut(s) 55, 113, 125, 475, 511
DpnI GATC 3 cut(s) 111, 348, 431
DpnII GATC 3 cut(s) 109, 346, 429
Eam1104I CTCTTC 2 cut(s) 698, 707
EarI CTCTTC 2 cut(s) 698, 707
Eco130I CCWWGG 1 cut(s) 812
Eco147I AGGCCT 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 812
ErhI CCWWGG 1 cut(s) 812
FaeI CATG 3 cut(s) 102, 153, 649
FatI CATG 3 cut(s) 98, 149, 645
Fnu4HI GCNGC 2 cut(s) 606, 609
FokI GGATG 2 cut(s) 197, 481
Fsp4HI GCNGC 2 cut(s) 606, 609
FspBI CTAG 3 cut(s) 38, 60, 841
GluI GCNGC 2 cut(s) 606, 609
HaeIII GGCC 3 cut(s) 234, 518, 548
HapII CCGG 4 cut(s) 258, 405, 519, 630
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 102, 153, 649
HincII GTYRAC 2 cut(s) 78, 88
HindII GTYRAC 2 cut(s) 78, 88
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 6 cut(s) 129, 140, 164, 461, 620, 680
HpaI GTTAAC 1 cut(s) 88
HpaII CCGG 4 cut(s) 258, 405, 519, 630
HphI GGTGA 3 cut(s) 316, 376, 687
Hpy166II GTNNAC 3 cut(s) 78, 88, 532
Hpy188I TCNGA 6 cut(s) 346, 447, 466, 478, 625, 806
Hpy188III TCNNGA 1 cut(s) 573
Hpy8I GTNNAC 3 cut(s) 78, 88, 532
HpyAV CCTTC 4 cut(s) 145, 347, 351, 381
HpyCH4III ACNGT 3 cut(s) 85, 315, 595
HpyCH4V TGCA 7 cut(s) 153, 455, 501, 605, 654, 737, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 507
HpyF3I CTNAG 5 cut(s) 55, 113, 125, 475, 511
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 102, 153, 649
KspAI GTTAAC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 109, 346, 429
LguI GCTCTTC 1 cut(s) 698
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 2 cut(s) 617, 620
LweI GCATC 1 cut(s) 758
MaeI CTAG 3 cut(s) 38, 60, 841
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 111, 348, 431
MboI GATC 3 cut(s) 109, 346, 429
MboII GAAGA 5 cut(s) 21, 135, 715, 724, 805
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 2 cut(s) 109, 429
MluCI AATT 3 cut(s) 539, 577, 732
MlyI GAGTC 2 cut(s) 455, 614
MnlI CCTC 7 cut(s) 60, 228, 298, 311, 337, 491, 508
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 4 cut(s) 87, 411, 441, 525
MspI CCGG 4 cut(s) 258, 405, 519, 630
MspR9I CCNGG 3 cut(s) 319, 520, 630
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 507
NciI CCSGG 2 cut(s) 520, 630
NdeII GATC 3 cut(s) 109, 346, 429
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 102, 153, 649
NlaIV GGNNCC 1 cut(s) 643
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 1 cut(s) 102
PceI AGGCCT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 698
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 4 cut(s) 129, 140, 164, 680
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 2 cut(s) 607, 610
PleI GAGTC 2 cut(s) 455, 614
PpsI GAGTC 2 cut(s) 455, 614
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 643
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 109, 429
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 698
SaqAI TTAA 4 cut(s) 87, 411, 441, 525
SatI GCNGC 2 cut(s) 606, 609
Sau3AI GATC 3 cut(s) 109, 346, 429
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 2 cut(s) 455, 614
ScrFI CCNGG 3 cut(s) 319, 520, 630
SfaNI GCATC 1 cut(s) 758
SfcI CTRYAG 1 cut(s) 499
SgrAI CRCCGGYG 1 cut(s) 257
Sse9I AATT 3 cut(s) 539, 577, 732
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 677
SspMI CTAG 3 cut(s) 38, 60, 841
StuI AGGCCT 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 317, 518, 628
StyI CCWWGG 1 cut(s) 812
TaaI ACNGT 3 cut(s) 85, 315, 595
TaqI TCGA 1 cut(s) 138
TasI AATT 3 cut(s) 539, 577, 732
TfiI GAWTC 4 cut(s) 129, 140, 164, 680
Tru1I TTAA 4 cut(s) 87, 411, 441, 525
Tru9I TTAA 4 cut(s) 87, 411, 441, 525
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 2 cut(s) 605, 608
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 17, 135, 603
TspRI CASTG 1 cut(s) 508
XceI RCATGY 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 3 cut(s) 38, 60, 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.