Rw2G048220

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000114
Physical Location & Seq
Forward (+)
75677145 .. 75677894
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048220.1

Sequence Viewer

Length: 675 bp
ATGGGGTGGCCCTTGTGTTACCTTGTCACACTGCTCTTATCTCACATCCTGTCATTCTGTACCTGCCGAGACAAAATAGTTCCAGGACAGTATATCAGTGGTAACCACACTTTGGTCTCTTCCCTTGGGACCTTTTCATTAGGCTTCTTCAATCCTAATGAAAATTCTACTAAATACTTCCTTGGTTTCTTTATGATCAGCAGGGATGGAAATCTTGTGGTGTTGGATCAGGCTAGAAATCTTGTCTGGTCAACTAATGCATCACTATCTGCTTCTGCAATGAACCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACTTTATGGCAGAGCTTCGATCATCCCTCTGATACTCTGTTGCCTGGCATTAAGATTAGCTTGAACAAAATGACTGGCCAACACAGGCTCCTTACATCCTGGGCTGCGCTTGATGATCCACAACCCGGCAAGTTCACCTTAGGAATAGATCCTAAAGTACCAATTCAGTGCTTTACCTGGAAAGAAACTACTCGGTATTGTAGAAGTTCTATGTACATCAGCAAGGATACAGGAACAAAGTTTCAAAATCGAGGTGGAACCATTTTTTCCTTACTTACAACTTTGATGTTGATGAGGTTTATATTGCTTACAGTGTCTCGGATAGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

224

Amino Acids

25.12

Weight (kDa)

8.29

Isoelectric Point (pI)

22.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 62 - 148 9.6e-25 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 112
AclWI GGATC 3 cut(s) 234, 452, 485
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 3 cut(s) 61, 501, 557
AfiI CCNNNNNNNGG 2 cut(s) 112, 467
AgsI TTSAA 4 cut(s) 151, 335, 406, 587
AjnI CCWGG 4 cut(s) 82, 385, 440, 518
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 3 cut(s) 330, 357, 402
AluI AGCT 3 cut(s) 330, 357, 402
Alw26I GTCTC 3 cut(s) 63, 121, 663
AlwI GGATC 3 cut(s) 234, 452, 485
AoxI GGCC 2 cut(s) 8, 418
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 2 cut(s) 9, 129
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 129
AxyI CCTNAGG 1 cut(s) 481
BalI TGGCCA 1 cut(s) 420
BbvI GCAGC 1 cut(s) 433
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 4 cut(s) 84, 387, 442, 520
BciVI GTATCC 2 cut(s) 301, 562
BclI TGATCA 1 cut(s) 195
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 3 cut(s) 63, 121, 663
BfaI CTAG 2 cut(s) 234, 302
BfuAI ACCTGC 1 cut(s) 71
BfuI GTATCC 2 cut(s) 301, 562
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 5 cut(s) 84, 387, 442, 468, 520
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 9, 129
BmiI GGNNCC 3 cut(s) 130, 431, 601
BmrFI CCNGG 5 cut(s) 84, 387, 442, 468, 520
BmsI GCATC 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 3 cut(s) 124, 181, 441
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 467
Bse1I ACTGG 2 cut(s) 298, 421
Bse21I CCTNAGG 1 cut(s) 481
Bse3DI GCAATG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 4 cut(s) 84, 387, 442, 520
BseDI CCNNGG 3 cut(s) 124, 181, 441
BseGI GGATG 4 cut(s) 45, 211, 364, 437
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 112, 467
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 298, 421
BseXI GCAGC 1 cut(s) 433
BshFI GGCC 2 cut(s) 10, 420
BsiSI CCGG 2 cut(s) 312, 468
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 112, 467
BsmAI GTCTC 3 cut(s) 63, 121, 663
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 2 cut(s) 10, 420
Bso31I GGTCTC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 6 cut(s) 195, 226, 361, 457, 490, 667
BspANI GGCC 2 cut(s) 10, 420
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 3 cut(s) 130, 431, 601
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 3 cut(s) 234, 452, 485
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 285
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 2 cut(s) 298, 421
BssECI CCNNGG 3 cut(s) 124, 181, 441
BssMI GATC 6 cut(s) 195, 226, 361, 457, 490, 667
BssT1I CCWWGG 2 cut(s) 124, 181
Bst2UI CCWGG 4 cut(s) 84, 387, 442, 520
Bst4CI ACNGT 2 cut(s) 90, 655
Bst6I CTCTTC 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 555
BstDEI CTNAG 2 cut(s) 326, 481
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 4 cut(s) 45, 211, 364, 437
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 6 cut(s) 198, 229, 364, 460, 493, 670
BstMAI GTCTC 3 cut(s) 63, 121, 663
BstMBI GATC 6 cut(s) 195, 226, 361, 457, 490, 667
BstNI CCWGG 4 cut(s) 84, 387, 442, 520
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 5 cut(s) 82, 385, 440, 466, 518
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 1 cut(s) 490
Bsu36I CCTNAGG 1 cut(s) 481
BsuI GTATCC 2 cut(s) 301, 562
BsuRI GGCC 2 cut(s) 10, 420
BtsCI GGATG 4 cut(s) 45, 211, 364, 437
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 4 cut(s) 29, 103, 515, 660
BveI ACCTGC 1 cut(s) 71
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 2 cut(s) 9, 129
Csp6I GTAC 3 cut(s) 60, 500, 556
CviJI RGCY 9 cut(s) 10, 144, 233, 330, 357, 402, 420, 430, 446
CviKI_1 RGCY 9 cut(s) 10, 144, 233, 330, 357, 402, 420, 430, 446
CviQI GTAC 3 cut(s) 60, 500, 556
DdeI CTNAG 2 cut(s) 326, 481
DpnI GATC 6 cut(s) 197, 228, 363, 459, 492, 669
DpnII GATC 6 cut(s) 195, 226, 361, 457, 490, 667
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 124, 181
Eco31I GGTCTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 481
Eco91I GGTNACC 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 129
EcoO65I GGTNACC 1 cut(s) 101
EcoRII CCWGG 4 cut(s) 82, 385, 440, 518
EcoT14I CCWWGG 2 cut(s) 124, 181
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 2 cut(s) 124, 181
FaiI YATR 5 cut(s) 93, 194, 349, 554, 644
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 464, 496
FaqI GGGAC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 4 cut(s) 32, 218, 351, 424
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 2 cut(s) 234, 302
GlaI GCGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 447
HaeIII GGCC 2 cut(s) 10, 420
HapII CCGG 2 cut(s) 312, 468
HhaI GCGC 1 cut(s) 451
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HpaII CCGG 2 cut(s) 312, 468
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 2 cut(s) 252, 477
Hpy188I TCNGA 3 cut(s) 327, 373, 663
Hpy8I GTNNAC 2 cut(s) 252, 477
HpyCH4III ACNGT 2 cut(s) 90, 655
HpyCH4V TGCA 2 cut(s) 260, 278
HpyF3I CTNAG 2 cut(s) 326, 481
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 6 cut(s) 195, 226, 361, 457, 490, 667
LmnI GCTCC 1 cut(s) 435
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 269
MaeI CTAG 2 cut(s) 234, 302
MaeIII GTNAC 4 cut(s) 17, 25, 101, 340
MalI GATC 6 cut(s) 197, 228, 363, 459, 492, 669
MboI GATC 6 cut(s) 195, 226, 361, 457, 490, 667
MboII GAAGA 3 cut(s) 111, 139, 347
MflI RGATCY 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 2 cut(s) 163, 504
MluNI TGGCCA 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 298, 379, 587, 630
Mox20I TGGCCA 1 cut(s) 420
Mph1103I ATGCAT 1 cut(s) 262
MscI TGGCCA 1 cut(s) 420
MseI TTAA 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 420
MspI CCGG 2 cut(s) 312, 468
MspR9I CCNGG 5 cut(s) 84, 387, 442, 468, 520
MvaI CCWGG 4 cut(s) 84, 387, 442, 520
NciI CCSGG 1 cut(s) 468
NdeII GATC 6 cut(s) 195, 226, 361, 457, 490, 667
NlaIV GGNNCC 3 cut(s) 130, 431, 601
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 25, 340
NsiI ATGCAT 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 4 cut(s) 82, 385, 440, 518
PspEI GGTNACC 1 cut(s) 101
PspGI CCWGG 4 cut(s) 82, 385, 440, 518
PspN4I GGNNCC 3 cut(s) 130, 431, 601
PspPI GGNCC 2 cut(s) 9, 129
PspPPI RGGWCCY 1 cut(s) 129
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 3 cut(s) 61, 501, 557
RsaNI GTAC 3 cut(s) 60, 500, 556
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 6 cut(s) 195, 226, 361, 457, 490, 667
Sau96I GGNCC 2 cut(s) 9, 129
ScrFI CCNGG 5 cut(s) 84, 387, 442, 468, 520
SfaNI GCATC 1 cut(s) 269
SinI GGWCC 1 cut(s) 129
Sse9I AATT 2 cut(s) 163, 504
SspMI CTAG 2 cut(s) 234, 302
StyD4I CCNGG 5 cut(s) 82, 385, 440, 466, 518
StyI CCWWGG 2 cut(s) 124, 181
TaaI ACNGT 2 cut(s) 90, 655
TaqI TCGA 2 cut(s) 360, 592
TasI AATT 2 cut(s) 163, 504
TatI WGTACW 1 cut(s) 555
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 4 cut(s) 36, 103, 515, 660
TseFI GTSAC 2 cut(s) 25, 340
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 25, 340
TspDTI ATGAA 3 cut(s) 126, 174, 296
TspRI CASTG 4 cut(s) 36, 103, 515, 660
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 129
XapI RAATTY 1 cut(s) 163
XspI CTAG 2 cut(s) 234, 302
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.