RchiOBHm_Chr4g0399551

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000114
Physical Location & Seq
Forward (+)
16853450 .. 16856477
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37167

Sequence Viewer

Length: 1917 bp
ATGATAGAAATTGGATTTTGTCATTTTATGGTTGAAGTGATGAAATTCATTGGGCGTTTGCTGGTGTTTCTCTCACTACTTCCTCTCTCTACCGCTCAATCTCCAAATATAATTAGCAACAGAACAACATGCCCCATTGATCTCAACTATGTTCTTAGAGTCCCCTTCAACTCCTCATTTTGCAAAAACTTCCGAGCCGATCCCCAAATGGACATCACCCAGATCCCATGTTGTCAAGTTCTATTGTCTCTCTTTGCAATAGGCCTTGCTCAACACCTCAAGGCCACCACTTTTTTCCTACTCCCCAACATAGCAGCCTCAAATTCTTGCCTCCAAAACTTCCAGTCGAAGCTCACCTCTCTAGCACTCCCTCCCAATCTTGTCTCTTATTGTTTTGACCCTATACAATTTGTGACTAGCCCCAACATCTGCGCCCAAATTGAGTCTTCCCAAGATTGGGTCTCTAAGCTTGATCAGACCACTGCATTTGACTCTGCATGCAAGGCAGACCTCACTGACCTATCATCCTGTGATGCTTGCGTGGCGGCTGGCTTTAGAATTCAGCAAGAATTAATCACCGTTGATGGTAACAGATCTCACTCTAGAGATTGTTGGTTCTTCACAATAATGTATGCAGCAGCTGGTATTATCAATGACTCTGAACCTGAAAGTGAGGGCAACCTGTCTTGTGTTTTCGGTTTACCTTTATTGAATAACACTCTTGTGGACACTGCTGTGAATTTGCCCAAAAAGAGCTATACAGCTCTTGTAACTGCAGTAGTCTCAGCAACAGGAGGGTTGCTTACGATATTATTTTTATACTTCTTATGGAAGGAATCTTTGGGAAAGAAAAGGGCATATAGTGAGAATATTCGAAATTTTAGTGCTGGAGATGAGAAGAATGATACAGAACTACCGGTCTTAAGTTTAAGGAGTATATTAGCTGCTACAAACAACTTCTCTGAAGCTAATAAACTAGGAGAGGGAGGGTTTGGCCCTGTTTATAAGGGCATCTTAAAAGAAAATCAAGAGGTAGCCATTAAAAGACTGTCAAAGAAGTCAGGGCAAGGATATCAGGAGTTCATGAATGAGTTAAAAGTTATAGCAAAGCTCCAACATAACAATCTTGTTAGGCTCTTGGGTTGCTGTATTGAAAAGGAAGAAATGATATTAATCTACGAGTACATGACTAATCGAAGTTTGGACAAATTTTTGTTTGATCCAAGGGAAAACACAAAGTTGGATTGGGGTAAACGCTTTCGGATTATAGAAGGTACAGCTCAAGGAGTACTTTATATCCACAAACACTCTAGATTGAAAATCATTCACCGGGATCTAAAAGTAAGTAATGTTCTGTTGGATGAAGAAATGAACCCCAAAATTTCAGATTTTGGAATGGCAAAGATTTTCGAGATAAATCAGACTGAAGCAAGTACCAACAGGGTTGTTGGGACATACGGTTACATGTCACCTGAGTATGCACGCTATGGTCATTTTTCTGAGAAATTGGACGTATTTAGTTTTGGAGTGTTGTTGCTGGAGATTGTAAGTGGAAGGAAGAATTCCGCTTTCTATCATCTTGAACACCCACTAACTCTTGCTGGATGGGCATGGAAATTATGGAAAGAAGGTAGAGGAATGGAGGTGATTGATGCATCAGTGAGAGAAACGTGTATGCCAAATGAAGCTTTAAGGTGTATCCATGTAGCATTATTGTGTGTTCAAGAAGATCCAGTTGATCGACCAACAATGTCTTCTGTAATTCACATGTTGGCCAATGAAGCTACATCACTTCCACTATTCAAAGAACCTGCATTTTCAACACATAGTAATTATAAGGCTGTTTGCTCTTCTTCTCCATCATCTAGCATTTTTTCGAACAATCTGGTAACCATTAGCATCCCTCAAGGTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

638

Amino Acids

71.3

Weight (kDa)

6.52

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 40 - 204 2.1e-38 SPARK
Pkinase PF00069 321 - 589 6.6e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 323 - 591 1.1e-51 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1005, 1836
Acc36I ACCTGC 1 cut(s) 1819
AccBSI CCGCTC 1 cut(s) 95
AciI CCGC 3 cut(s) 93, 545, 1566
AclWI GGATC 5 cut(s) 194, 217, 1214, 1341, 1724
AcoI YGGCCR 1 cut(s) 1773
AcsI RAATTY 8 cut(s) 44, 322, 558, 739, 877, 1208, 1380, 1561
AcuI CTGAAG 2 cut(s) 984, 1446
AfaI GTAC 4 cut(s) 1184, 1276, 1290, 1435
AfiI CCNNNNNNNGG 2 cut(s) 456, 457
AflII CTTAAG 1 cut(s) 922
AflIII ACRYGT 3 cut(s) 1464, 1670, 1767
AgeI ACCGGT 1 cut(s) 916
AgsI TTSAA 9 cut(s) 35, 169, 712, 1154, 1318, 1583, 1724, 1804, 1821
AjuI GAANNNNNNNTTGG 4 cut(s) 824, 856, 1738, 1770
AleI CACNNNNGTG 2 cut(s) 722, 734
Alw26I GTCTC 4 cut(s) 252, 388, 466, 787
AlwI GGATC 5 cut(s) 194, 217, 1214, 1341, 1724
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 4 cut(s) 262, 282, 994, 1773
ApeKI GCWGC 4 cut(s) 314, 635, 638, 944
ApoI RAATTY 8 cut(s) 44, 322, 558, 739, 877, 1208, 1380, 1561
AseI ATTAAT 2 cut(s) 572, 1172
AsiGI ACCGGT 1 cut(s) 916
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 995
AsuC2I CCSGG 1 cut(s) 1331
AsuHPI GGTGA 6 cut(s) 208, 346, 568, 1319, 1461, 1657
AsuII TTCGAA 2 cut(s) 874, 1877
BalI TGGCCA 1 cut(s) 1775
BbsI GAAGAC 2 cut(s) 438, 1746
BbvI GCAGC 4 cut(s) 326, 647, 650, 931
BccI CCATC 3 cut(s) 578, 1599, 1867
BciVI GTATCC 1 cut(s) 1709
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 1331
BcoDI GTCTC 4 cut(s) 252, 388, 466, 787
BfaI CTAG 6 cut(s) 362, 417, 603, 977, 1311, 1866
BfmI CTRYAG 1 cut(s) 774
BfrI CTTAAG 1 cut(s) 922
BfuAI ACCTGC 1 cut(s) 1819
BfuI GTATCC 1 cut(s) 1709
BglII AGATCT 1 cut(s) 593
BisI GCNGC 5 cut(s) 315, 546, 636, 639, 945
BlsI GCNGC 5 cut(s) 316, 547, 637, 640, 946
BmcAI AGTACT 1 cut(s) 1290
Bme1390I CCNGG 1 cut(s) 1331
BmgT120I GGNCC 1 cut(s) 995
BmrFI CCNGG 1 cut(s) 1331
BmsI GCATC 5 cut(s) 523, 1020, 1642, 1664, 1908
BpiI GAAGAC 2 cut(s) 438, 1746
BpmI CTGGAG 2 cut(s) 909, 1559
Bpu14I TTCGAA 2 cut(s) 874, 1877
BpuEI CTTGAG 3 cut(s) 263, 1266, 1890
BpuMI CCSGG 1 cut(s) 1331
BsaBI GATNNNNATC 1 cut(s) 1172
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 1223
BsaWI WCCGGW 1 cut(s) 916
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 457
Bse118I RCCGGY 1 cut(s) 916
Bse1I ACTGG 2 cut(s) 343, 1733
Bse8I GATNNNNATC 1 cut(s) 1172
BseDI CCNNGG 1 cut(s) 1223
BseGI GGATG 4 cut(s) 524, 1366, 1610, 1899
BseJI GATNNNNATC 1 cut(s) 1172
BseLI CCNNNNNNNGG 2 cut(s) 456, 457
BseMII CTCAG 3 cut(s) 798, 1464, 1491
BseNI ACTGG 2 cut(s) 343, 1733
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 4 cut(s) 326, 647, 650, 931
BshFI GGCC 4 cut(s) 264, 284, 996, 1775
BshTI ACCGGT 1 cut(s) 916
BsiSI CCGG 2 cut(s) 917, 1330
BslFI GGGAC 2 cut(s) 146, 1465
BslI CCNNNNNNNGG 2 cut(s) 456, 457
BsmAI GTCTC 4 cut(s) 252, 388, 466, 787
BsmFI GGGAC 2 cut(s) 146, 1465
BsnI GGCC 4 cut(s) 264, 284, 996, 1775
Bso31I GGTCTC 1 cut(s) 466
Bsp119I TTCGAA 2 cut(s) 874, 1877
Bsp143I GATC 9 cut(s) 139, 199, 222, 472, 593, 1219, 1333, 1729, 1738
BspACI CCGC 3 cut(s) 93, 545, 1566
BspANI GGCC 4 cut(s) 264, 284, 996, 1775
BspCNI CTCAG 3 cut(s) 797, 1465, 1492
BspHI TCATGA 1 cut(s) 1083
BspMAI CTGCAG 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 1819
BspPI GGATC 5 cut(s) 194, 217, 1214, 1341, 1724
BspQI GCTCTTC 1 cut(s) 1855
BspT104I TTCGAA 2 cut(s) 874, 1877
BspTI CTTAAG 1 cut(s) 922
BspTNI GGTCTC 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 916
BsrI ACTGG 2 cut(s) 343, 1733
BssAI RCCGGY 1 cut(s) 916
BssECI CCNNGG 1 cut(s) 1223
BssMI GATC 9 cut(s) 139, 199, 222, 472, 593, 1219, 1333, 1729, 1738
BssT1I CCWWGG 1 cut(s) 1223
Bst4CI ACNGT 3 cut(s) 580, 1050, 1460
Bst6I CTCTTC 1 cut(s) 1855
BstAFI CTTAAG 1 cut(s) 922
BstBI TTCGAA 2 cut(s) 874, 1877
BstC8I GCNNGC 4 cut(s) 499, 538, 550, 1483
BstDEI CTNAG 5 cut(s) 155, 465, 784, 1473, 1500
BstEII GGTNACC 1 cut(s) 1888
BstF5I GGATG 4 cut(s) 524, 1366, 1610, 1899
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 9 cut(s) 142, 202, 225, 475, 596, 1222, 1336, 1732, 1741
BstMAI GTCTC 4 cut(s) 252, 388, 466, 787
BstMBI GATC 9 cut(s) 139, 199, 222, 472, 593, 1219, 1333, 1729, 1738
BstMWI GCNNNNNNNGC 4 cut(s) 503, 542, 1607, 1781
BstNSI RCATGY 4 cut(s) 132, 501, 1468, 1771
BstPI GGTNACC 1 cut(s) 1888
BstSCI CCNGG 1 cut(s) 1329
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 4 cut(s) 326, 647, 650, 931
BstV2I GAAGAC 2 cut(s) 438, 1746
BstX2I RGATCY 4 cut(s) 222, 593, 1333, 1729
BstYI RGATCY 4 cut(s) 222, 593, 1333, 1729
BsuI GTATCC 1 cut(s) 1709
BsuRI GGCC 4 cut(s) 264, 284, 996, 1775
BtsCI GGATG 4 cut(s) 524, 1366, 1610, 1899
BtsI GCAGTG 2 cut(s) 480, 729
BtsIMutI CAGTG 4 cut(s) 480, 513, 729, 1665
BveI ACCTGC 1 cut(s) 1819
Cac8I GCNNGC 4 cut(s) 499, 538, 550, 1483
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 1 cut(s) 1083
CfoI GCGC 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 916
Cfr13I GGNCC 1 cut(s) 995
Csp6I GTAC 4 cut(s) 1183, 1275, 1289, 1434
CspAI ACCGGT 1 cut(s) 916
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 9 cut(s) 129, 228, 498, 1084, 1186, 1465, 1611, 1703, 1768
CviQI GTAC 4 cut(s) 1183, 1275, 1289, 1434
DdeI CTNAG 5 cut(s) 155, 465, 784, 1473, 1500
DpnI GATC 9 cut(s) 141, 201, 224, 474, 595, 1221, 1335, 1731, 1740
DpnII GATC 9 cut(s) 139, 199, 222, 472, 593, 1219, 1333, 1729, 1738
EaeI YGGCCR 1 cut(s) 1773
Eam1104I CTCTTC 1 cut(s) 1855
EarI CTCTTC 1 cut(s) 1855
Eco130I CCWWGG 1 cut(s) 1223
Eco147I AGGCCT 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 466
Eco32I GATATC 1 cut(s) 1073
Eco57I CTGAAG 2 cut(s) 984, 1446
Eco91I GGTNACC 1 cut(s) 1888
EcoO65I GGTNACC 1 cut(s) 1888
EcoRI GAATTC 2 cut(s) 558, 1561
EcoRV GATATC 1 cut(s) 1073
EcoT14I CCWWGG 1 cut(s) 1223
EcoT22I ATGCAT 1 cut(s) 1657
ErhI CCWWGG 1 cut(s) 1223
FaeI CATG 9 cut(s) 132, 231, 501, 1087, 1189, 1468, 1614, 1706, 1771
FalI AAGNNNNNCTT 4 cut(s) 998, 1030, 1275, 1307
FaqI GGGAC 2 cut(s) 146, 1465
FatI CATG 9 cut(s) 128, 227, 497, 1083, 1185, 1464, 1610, 1702, 1767
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 5 cut(s) 315, 546, 636, 639, 945
FokI GGATG 4 cut(s) 511, 1373, 1617, 1886
Fsp4HI GCNGC 5 cut(s) 315, 546, 636, 639, 945
FspBI CTAG 6 cut(s) 362, 417, 603, 977, 1311, 1866
GlaI GCGC 1 cut(s) 433
GluI GCNGC 5 cut(s) 315, 546, 636, 639, 945
GsuI CTGGAG 2 cut(s) 909, 1559
HaeIII GGCC 4 cut(s) 264, 284, 996, 1775
HapII CCGG 2 cut(s) 917, 1330
HhaI GCGC 1 cut(s) 434
Hin1II CATG 9 cut(s) 132, 231, 501, 1087, 1189, 1468, 1614, 1706, 1771
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HindIII AAGCTT 2 cut(s) 467, 1686
HinfI GANTC 5 cut(s) 159, 443, 491, 656, 836
HpaII CCGG 2 cut(s) 917, 1330
HphI GGTGA 6 cut(s) 208, 346, 568, 1319, 1461, 1657
Hpy166II GTNNAC 3 cut(s) 701, 727, 1253
Hpy188I TCNGA 8 cut(s) 194, 477, 661, 964, 1263, 1387, 1422, 1501
Hpy188III TCNNGA 8 cut(s) 603, 1028, 1076, 1084, 1311, 1411, 1580, 1724
Hpy8I GTNNAC 3 cut(s) 701, 727, 1253
HpyAV CCTTC 5 cut(s) 175, 826, 1265, 1548, 1622
HpyCH4III ACNGT 3 cut(s) 580, 1050, 1460
HpyCH4IV ACGT 2 cut(s) 1512, 1670
HpyF10VI GCNNNNNNNGC 4 cut(s) 503, 542, 1607, 1781
HpyF3I CTNAG 5 cut(s) 155, 465, 784, 1473, 1500
HpySE526I ACGT 2 cut(s) 1512, 1670
Hsp92II CATG 9 cut(s) 132, 231, 501, 1087, 1189, 1468, 1614, 1706, 1771
HspAI GCGC 1 cut(s) 432
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 9 cut(s) 139, 199, 222, 472, 593, 1219, 1333, 1729, 1738
LguI GCTCTTC 1 cut(s) 1855
LmnI GCTCC 1 cut(s) 1116
Lsp1109I GCAGC 4 cut(s) 326, 647, 650, 931
LweI GCATC 5 cut(s) 523, 1020, 1642, 1664, 1908
MaeI CTAG 6 cut(s) 362, 417, 603, 977, 1311, 1866
MaeII ACGT 2 cut(s) 1512, 1670
MaeIII GTNAC 6 cut(s) 412, 587, 769, 1460, 1467, 1888
MalI GATC 9 cut(s) 141, 201, 224, 474, 595, 1221, 1335, 1731, 1740
MbiI CCGCTC 1 cut(s) 95
MboI GATC 9 cut(s) 139, 199, 222, 472, 593, 1219, 1333, 1729, 1738
MflI RGATCY 4 cut(s) 222, 593, 1333, 1729
MlsI TGGCCA 1 cut(s) 1775
MluNI TGGCCA 1 cut(s) 1775
MlyI GAGTC 4 cut(s) 168, 452, 485, 650
MmeI TCCRAC 3 cut(s) 1138, 1221, 1338
Mox20I TGGCCA 1 cut(s) 1775
Mph1103I ATGCAT 1 cut(s) 1657
MscI TGGCCA 1 cut(s) 1775
MseI TTAA 8 cut(s) 572, 923, 929, 1016, 1041, 1094, 1172, 1691
MslI CAYNNNNRTG 4 cut(s) 626, 722, 734, 1714
Msp20I TGGCCA 1 cut(s) 1775
MspA1I CMGCKG 1 cut(s) 641
MspCI CTTAAG 1 cut(s) 922
MspI CCGG 2 cut(s) 917, 1330
MspR9I CCNGG 1 cut(s) 1331
MwoI GCNNNNNNNGC 4 cut(s) 503, 542, 1607, 1781
NciI CCSGG 1 cut(s) 1331
NdeII GATC 9 cut(s) 139, 199, 222, 472, 593, 1219, 1333, 1729, 1738
NlaIII CATG 9 cut(s) 132, 231, 501, 1087, 1189, 1468, 1614, 1706, 1771
NmuCI GTSAC 2 cut(s) 412, 1467
NsiI ATGCAT 1 cut(s) 1657
NspI RCATGY 4 cut(s) 132, 501, 1468, 1771
NspV TTCGAA 2 cut(s) 874, 1877
OliI CACNNNNGTG 2 cut(s) 722, 734
PaeI GCATGC 1 cut(s) 501
PagI TCATGA 1 cut(s) 1083
PceI AGGCCT 1 cut(s) 264
PciI ACATGT 2 cut(s) 1464, 1767
PciSI GCTCTTC 1 cut(s) 1855
PfeI GAWTC 1 cut(s) 836
PinAI ACCGGT 1 cut(s) 916
PkrI GCNGC 5 cut(s) 316, 547, 637, 640, 946
PleI GAGTC 4 cut(s) 167, 451, 485, 650
PpsI GAGTC 4 cut(s) 167, 451, 485, 650
PscI ACATGT 2 cut(s) 1464, 1767
PshBI ATTAAT 2 cut(s) 572, 1172
PsiI TTATAA 2 cut(s) 1005, 1836
PspEI GGTNACC 1 cut(s) 1888
PspPI GGNCC 1 cut(s) 995
PsrI GAACNNNNNNTAC 2 cut(s) 1335, 1367
PstI CTGCAG 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 4 cut(s) 222, 593, 1333, 1729
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 4 cut(s) 1184, 1276, 1290, 1435
RsaNI GTAC 4 cut(s) 1183, 1275, 1289, 1434
RseI CAYNNNNRTG 4 cut(s) 626, 722, 734, 1714
SapI GCTCTTC 1 cut(s) 1855
SaqAI TTAA 8 cut(s) 572, 923, 929, 1016, 1041, 1094, 1172, 1691
SatI GCNGC 5 cut(s) 315, 546, 636, 639, 945
Sau3AI GATC 9 cut(s) 139, 199, 222, 472, 593, 1219, 1333, 1729, 1738
Sau96I GGNCC 1 cut(s) 995
ScaI AGTACT 1 cut(s) 1290
SchI GAGTC 4 cut(s) 168, 452, 485, 650
ScrFI CCNGG 1 cut(s) 1331
SfaNI GCATC 5 cut(s) 523, 1020, 1642, 1664, 1908
SfcI CTRYAG 1 cut(s) 774
SfuI TTCGAA 2 cut(s) 874, 1877
SmiMI CAYNNNNRTG 4 cut(s) 626, 722, 734, 1714
SmlI CTYRAG 4 cut(s) 278, 922, 1281, 1905
SmoI CTYRAG 4 cut(s) 278, 922, 1281, 1905
SphI GCATGC 1 cut(s) 501
SseBI AGGCCT 1 cut(s) 264
SsiI CCGC 3 cut(s) 93, 545, 1566
SspI AATATT 1 cut(s) 871
SspMI CTAG 6 cut(s) 362, 417, 603, 977, 1311, 1866
StuI AGGCCT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 1329
StyI CCWWGG 1 cut(s) 1223
TaaI ACNGT 3 cut(s) 580, 1050, 1460
TaiI ACGT 2 cut(s) 1515, 1673
TaqI TCGA 6 cut(s) 347, 874, 1195, 1410, 1741, 1877
TatI WGTACW 2 cut(s) 1182, 1288
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 1 cut(s) 836
Tru1I TTAA 8 cut(s) 572, 923, 929, 1016, 1041, 1094, 1172, 1691
Tru9I TTAA 8 cut(s) 572, 923, 929, 1016, 1041, 1094, 1172, 1691
TscAI CASTG 4 cut(s) 487, 520, 736, 1665
TseFI GTSAC 2 cut(s) 412, 1467
TseI GCWGC 4 cut(s) 314, 635, 638, 944
Tsp45I GTSAC 2 cut(s) 412, 1467
TspDTI ATGAA 8 cut(s) 37, 56, 1072, 1100, 1377, 1385, 1698, 1794
TspRI CASTG 4 cut(s) 487, 520, 736, 1665
Vha464I CTTAAG 1 cut(s) 922
VspI ATTAAT 2 cut(s) 572, 1172
XapI RAATTY 8 cut(s) 44, 322, 558, 739, 877, 1208, 1380, 1561
XbaI TCTAGA 2 cut(s) 602, 1310
XceI RCATGY 4 cut(s) 132, 501, 1468, 1771
XspI CTAG 6 cut(s) 362, 417, 603, 977, 1311, 1866
ZrmI AGTACT 1 cut(s) 1290
Zsp2I ATGCAT 1 cut(s) 1657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.