FvH4_6g44109

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000114
Physical Location & Seq
Reverse (-)
34040257 .. 34044006
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44109.t1

Sequence Viewer

Length: 2187 bp
ATGCTCAACAGCGATGGAAACCTTGTGGTGTTGGATGATACTAGAAACCTTATTGTCTGGTCAACTAATGCTTCAATATCTGCTTCTGCAATGAATCACACAACTGGACTACTAGAGGATTCCGGAAACCTTGTTCTGAGCTTTGGAGAAGTCACTCTTTGGCAGAGCTTCGATCATCCCTCTGATACTTGGTTGCCAGACATGAAGCTTAGCTTGAACAAAAAGACTGGCCAACGAAGGCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAATTCACGCTCGGCATTGATCCTCAAGTACCACTTCAGGCCTTTATCTGGAAGGAAACTCTTCCGTATAGTAGAAGTACTGTGTACGTTGGCAAGGATACAAGAACAGAGTATCCAGATGTAGGTGGATCAGCGCTTCTCCTTTCTTACGACTTTGATGCTGATGAGGTTTATATTGTTGTAACGGTCTCGGATAGGTCAGTTAAATTCAGGACGTGGATGAGTGCTGCAGGGCAACTTCAACAGCTGCTGTGGCAGGATTCTACAAAAACGTGGTTGGAACTGGGGAATCCTGTTCATAACTGTTATTTTTATGCTCATTGTGGTCCCAATAGTGTCTGTCGTAACGATGAATCCCTGTCGTCATCACCATGCAAGTGTTTGACAGGGTTTAAAGCCAAGTTTCCAAACCAATTGGCGGTGGGGGATTGGTCCGGTGGCTGTGTTAGGGAAAAGGTGTTTACATGTAGTAACGACATACAAGGCAACTTTTCGAAGCTTGAAAACGTGAAACTGCCGGATTATACTGTTCTGTTAAACAATAAGAGTATGAGCGAGTGTAAGTCTGAATGTCAGCAGAACTGTTCTTGCACAGCTTATGCTTATGTAAATGGAACGGATGAAAGTACTGGGAAATGTTTGGCATGGTTTGGCGACTTACTGGATATAGTAGAGAATCTCCATGTTGATGCACATGATGTCTATATTCGTGTTTACGGTTCTGAATCAGGCAAAAATGATCATTCTGCTAATTCCTTGAAGCGGACCCTTGTAATTGCAATAGTCTCTGCAGCAGTTGGACTTCTTACAATAACTTTTGGCTATTTCTTATGGAAGAACAAACTGGGGAGGATAGCTAGAAGAGTGAGTGAGAATATAAGTAAGGTTCGTGCAGGAGGTGGGAAGAATGATACAGAACTACCACTCTTCAGTTTGAGGAGTATATTAGCTGCTACAAACAACTTCTCTGAAGGAAATAAACTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGAATTTTGGCGGAAAATAAAGAAGTGGCCGTAAAGAGGTTATCAAAGAAGTCCGGGCAAGGACATCATGAGTTCATGAATGAGTTGGAGCTTATAGCCAAACTCCAGCACACCAACCTTGCTCGGCTCCTGGGTTACTGTACGGAAGAAGATGAACTGATATTGATCTACGAGTACTTGCCTAATCGAAGTTTGGACAAATTTCTGTTTGATCATTTTGAAAAGACAAAGTTGGACTGGGCTACACGCTTTCAGATTATAAAAGGCATTGCTCAAGGAGTACTATATATCCACAAATACTCTAGGTTGAAAATCATACATAGAGATCTAAAAGCAAGTAATGTTCTGTTGGATGGAACAATGAATCCCAAAGTGTCTGACTTTGGAATGGCAAGGATTTTTGATATAAATCAAATTGAAGCAAGTACCAACAAGGTTGTTGGGACATACGGTTACATGTCACCAGAATATGCCTTGTATGGTCATTTCTCTGAGAAATTGGATGTATATAGTTTCGGGATATTGTTGTTAGAGATTGTAAGTGGAAATAAGAATGCTTCCTTTTATCATTGTGAAAATTCACAAACGCTTGCTCAATGGATATGGGAATTATGGAAAGAAGGTAGAGGAATGGAGGTAATTGACGCATCAGTAAGGGAGACTTGCCGGATTCATGAAGCTTTGAGGTGCATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGACCAACAATGTCATCGGTGATTCATATGCTAGAGGTTAATGAAGCTACATCACTTCCTCCCTCAAAAGAACCTGCTTTTTCAACAAGTTTTAATTCAAGTTCTGTTACCCCTTATTCTGAAAATATAGTCACTATTACTTTGCCAGAACCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

729

Amino Acids

81.37

Weight (kDa)

6.02

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 2 - 85 7.5e-23 D-mannose binding lectin
S_locus_glycop PF00954 146 - 228 4.6e-14 S-locus glycoprotein domain
PAN_2 PF08276 255 - 317 2.5e-15 PAN-like domain
Pkinase PF00069 417 - 685 3.2e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 419 - 686 5.3e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1293, 1556
Acc36I ACCTGC 1 cut(s) 2110
AccB1I GGYRCC 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 122
AciI CCGC 3 cut(s) 701, 1045, 1307
AclWI GGATC 3 cut(s) 263, 296, 418
AcoI YGGCCR 2 cut(s) 229, 1323
AcsI RAATTY 5 cut(s) 284, 488, 1299, 1496, 1873
AcuI CTGAAG 3 cut(s) 302, 1195, 1272
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 8 cut(s) 312, 361, 368, 910, 1438, 1472, 1578, 1723
AfeI AGCGCT 2 cut(s) 261, 417
AfiI CCNNNNNNNGG 6 cut(s) 278, 330, 404, 700, 1044, 1332
AflIII ACRYGT 2 cut(s) 746, 1752
AjiI CACGTC 1 cut(s) 498
AjnI CCWGG 2 cut(s) 251, 1425
AloI GAACNNNNNNTCC 6 cut(s) 117, 149, 379, 411, 1645, 1677
Alw26I GTCTC 3 cut(s) 475, 1072, 1949
AlwI GGATC 3 cut(s) 263, 296, 418
AlwNI CAGNNNCTG 1 cut(s) 532
Aor13HI TCCGGA 1 cut(s) 122
Aor51HI AGCGCT 2 cut(s) 261, 417
AoxI GGCC 4 cut(s) 229, 321, 1282, 1323
ApeKI GCWGC 5 cut(s) 257, 509, 529, 1073, 1232
ApoI RAATTY 5 cut(s) 284, 488, 1299, 1496, 1873
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 3 cut(s) 243, 262, 418
AspS9I GGNCC 4 cut(s) 608, 714, 1047, 1283
AsuC2I CCSGG 2 cut(s) 279, 1351
AsuHPI GGTGA 3 cut(s) 642, 1749, 2059
AsuII TTCGAA 1 cut(s) 776
AvaII GGWCC 3 cut(s) 608, 714, 1047
BalI TGGCCA 1 cut(s) 231
BanI GGYRCC 1 cut(s) 240
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BbvI GCAGC 5 cut(s) 269, 496, 516, 1085, 1219
BccI CCATC 2 cut(s) 8, 1643
BceAI ACGGC 1 cut(s) 1310
BcgI CGANNNNNNTGC 4 cut(s) 422, 456, 1975, 2009
BciT130I CCWGG 2 cut(s) 253, 1427
BciVI GTATCC 2 cut(s) 373, 405
BclI TGATCA 2 cut(s) 1021, 1507
BcnI CCSGG 2 cut(s) 279, 1351
BcoDI GTCTC 3 cut(s) 475, 1072, 1949
BfaI CTAG 5 cut(s) 42, 113, 1140, 1599, 2060
BfmI CTRYAG 2 cut(s) 510, 1071
BfoI RGCGCY 3 cut(s) 244, 263, 419
BfuAI ACCTGC 1 cut(s) 2110
BfuI GTATCC 2 cut(s) 373, 405
BglII AGATCT 1 cut(s) 1621
BisI GCNGC 5 cut(s) 258, 510, 530, 1074, 1233
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 5 cut(s) 259, 511, 531, 1075, 1234
BmcAI AGTACT 4 cut(s) 361, 910, 1472, 1578
Bme1390I CCNGG 4 cut(s) 253, 279, 1351, 1427
Bme18I GGWCC 3 cut(s) 608, 714, 1047
BmgBI CACGTC 1 cut(s) 498
BmgT120I GGNCC 4 cut(s) 608, 714, 1047, 1283
BmiI GGNNCC 4 cut(s) 242, 610, 1049, 1424
BmrFI CCNGG 4 cut(s) 253, 279, 1351, 1427
BmrI ACTGGG 4 cut(s) 575, 921, 1136, 1543
BmsI GCATC 4 cut(s) 430, 961, 1952, 1995
BmuI ACTGGG 4 cut(s) 575, 921, 1136, 1543
BpmI CTGGAG 2 cut(s) 1385, 2004
Bpu1102I GCTNAGC 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 776
BpuEI CTTGAG 2 cut(s) 291, 1554
BpuMI CCSGG 2 cut(s) 279, 1351
BsaBI GATNNNNATC 2 cut(s) 1460, 1704
BsaHI GRCGYC 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 2 cut(s) 252, 1426
BsaWI WCCGGW 2 cut(s) 122, 716
Bsc4I CCNNNNNNNGG 6 cut(s) 278, 330, 404, 700, 1044, 1332
Bse1I ACTGG 7 cut(s) 109, 232, 570, 916, 948, 1131, 1538
Bse3DI GCAATG 2 cut(s) 96, 1563
Bse8I GATNNNNATC 2 cut(s) 1460, 1704
BseAI TCCGGA 1 cut(s) 122
BseBI CCWGG 2 cut(s) 253, 1427
BseDI CCNNGG 2 cut(s) 252, 1426
BseGI GGATG 8 cut(s) 40, 175, 248, 507, 907, 1654, 1804, 1986
BseJI GATNNNNATC 2 cut(s) 1460, 1704
BseLI CCNNNNNNNGG 6 cut(s) 278, 330, 404, 700, 1044, 1332
BseMI GCAATG 2 cut(s) 96, 1563
BseMII CTCAG 2 cut(s) 128, 1779
BseNI ACTGG 7 cut(s) 109, 232, 570, 916, 948, 1131, 1538
BseRI GAGGAG 1 cut(s) 1234
BseXI GCAGC 5 cut(s) 269, 496, 516, 1085, 1219
BsgI GTGCAG 1 cut(s) 1194
BshFI GGCC 4 cut(s) 231, 323, 1284, 1325
BshNI GGYRCC 1 cut(s) 240
BsiSI CCGG 6 cut(s) 123, 279, 717, 800, 1350, 1963
BslFI GGGAC 2 cut(s) 594, 1753
BslI CCNNNNNNNGG 6 cut(s) 278, 330, 404, 700, 1044, 1332
BsmAI GTCTC 3 cut(s) 475, 1072, 1949
BsmFI GGGAC 2 cut(s) 594, 1753
BsmI GAATGC 1 cut(s) 1855
BsnI GGCC 4 cut(s) 231, 323, 1284, 1325
Bso31I GGTCTC 1 cut(s) 475
Bsp119I TTCGAA 1 cut(s) 776
Bsp13I TCCGGA 1 cut(s) 122
Bsp143I GATC 9 cut(s) 172, 268, 301, 410, 1021, 1461, 1507, 1621, 2026
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 3 cut(s) 701, 1045, 1307
BspANI GGCC 4 cut(s) 231, 323, 1284, 1325
BspCNI CTCAG 2 cut(s) 129, 1780
BspEI TCCGGA 1 cut(s) 122
BspHI TCATGA 3 cut(s) 1363, 1371, 1969
BspLI GGNNCC 4 cut(s) 242, 610, 1049, 1424
BspMAI CTGCAG 2 cut(s) 514, 1075
BspMI ACCTGC 1 cut(s) 2110
BspPI GGATC 3 cut(s) 263, 296, 418
BspT104I TTCGAA 1 cut(s) 776
BspT107I GGYRCC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 475
BsrDI GCAATG 2 cut(s) 96, 1563
BsrI ACTGG 7 cut(s) 109, 232, 570, 916, 948, 1131, 1538
BssECI CCNNGG 2 cut(s) 252, 1426
BssMI GATC 9 cut(s) 172, 268, 301, 410, 1021, 1461, 1507, 1621, 2026
BssNI GRCGYC 1 cut(s) 241
Bst2UI CCWGG 2 cut(s) 253, 1427
Bst4CI ACNGT 8 cut(s) 364, 469, 587, 811, 866, 1001, 1436, 1748
Bst6I CTCTTC 3 cut(s) 348, 1138, 1214
BstACI GRCGYC 1 cut(s) 241
BstBI TTCGAA 1 cut(s) 776
BstC8I GCNNGC 1 cut(s) 1887
BstDEI CTNAG 3 cut(s) 137, 209, 1788
BstF5I GGATG 8 cut(s) 40, 175, 248, 507, 907, 1654, 1804, 1986
BstH2I RGCGCY 3 cut(s) 244, 263, 419
BstHHI GCGC 3 cut(s) 243, 262, 418
BstKTI GATC 9 cut(s) 175, 271, 304, 413, 1024, 1464, 1510, 1624, 2029
BstMAI GTCTC 3 cut(s) 475, 1072, 1949
BstMBI GATC 9 cut(s) 172, 268, 301, 410, 1021, 1461, 1507, 1621, 2026
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 2 cut(s) 253, 1427
BstNSI RCATGY 2 cut(s) 750, 1756
BstSCI CCNGG 4 cut(s) 251, 277, 1349, 1425
BstSFI CTRYAG 2 cut(s) 510, 1071
BstV1I GCAGC 5 cut(s) 269, 496, 516, 1085, 1219
BstX2I RGATCY 1 cut(s) 1621
BstYI RGATCY 1 cut(s) 1621
BsuI GTATCC 2 cut(s) 373, 405
BsuRI GGCC 4 cut(s) 231, 323, 1284, 1325
BtgZI GCGATG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 498
BtsCI GGATG 8 cut(s) 40, 175, 248, 507, 907, 1654, 1804, 1986
BveI ACCTGC 1 cut(s) 2110
Cac8I GCNNGC 1 cut(s) 1887
CaiI CAGNNNCTG 1 cut(s) 532
CciI TCATGA 3 cut(s) 1363, 1371, 1969
CfoI GCGC 3 cut(s) 243, 262, 418
Cfr13I GGNCC 4 cut(s) 608, 714, 1047, 1283
CseI GACGC 1 cut(s) 1949
Csp6I GTAC 8 cut(s) 311, 360, 367, 909, 1437, 1471, 1577, 1722
CviQI GTAC 8 cut(s) 311, 360, 367, 909, 1437, 1471, 1577, 1722
DdeI CTNAG 3 cut(s) 137, 209, 1788
DinI GGCGCC 1 cut(s) 242
DpnI GATC 9 cut(s) 174, 270, 303, 412, 1023, 1463, 1509, 1623, 2028
DpnII GATC 9 cut(s) 172, 268, 301, 410, 1021, 1461, 1507, 1621, 2026
DraI TTTAAA 1 cut(s) 676
EaeI YGGCCR 2 cut(s) 229, 1323
Eam1104I CTCTTC 3 cut(s) 348, 1138, 1214
EarI CTCTTC 3 cut(s) 348, 1138, 1214
EciI GGCGGA 1 cut(s) 1322
Eco147I AGGCCT 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 475
Eco47I GGWCC 3 cut(s) 608, 714, 1047
Eco47III AGCGCT 2 cut(s) 261, 417
Eco57I CTGAAG 3 cut(s) 302, 1195, 1272
EcoRII CCWGG 2 cut(s) 251, 1425
EgeI GGCGCC 1 cut(s) 242
EheI GGCGCC 1 cut(s) 242
FalI AAGNNNNNCTT 8 cut(s) 141, 173, 197, 229, 300, 332, 1942, 1974
FaqI GGGAC 2 cut(s) 594, 1753
FauNDI CATATG 1 cut(s) 2055
FbaI TGATCA 2 cut(s) 1021, 1507
Fnu4HI GCNGC 5 cut(s) 258, 510, 530, 1074, 1233
FokI GGATG 8 cut(s) 47, 162, 235, 514, 914, 1661, 1811, 1973
Fsp4HI GCNGC 5 cut(s) 258, 510, 530, 1074, 1233
FspBI CTAG 5 cut(s) 42, 113, 1140, 1599, 2060
GlaI GCGC 3 cut(s) 242, 261, 417
GluI GCNGC 5 cut(s) 258, 510, 530, 1074, 1233
GsuI CTGGAG 2 cut(s) 1385, 2004
HaeII RGCGCY 3 cut(s) 244, 263, 419
HaeIII GGCC 4 cut(s) 231, 323, 1284, 1325
HapII CCGG 6 cut(s) 123, 279, 717, 800, 1350, 1963
HgaI GACGC 1 cut(s) 1949
HhaI GCGC 3 cut(s) 243, 262, 418
Hin1I GRCGYC 1 cut(s) 241
Hin6I GCGC 3 cut(s) 241, 260, 416
HinP1I GCGC 3 cut(s) 241, 260, 416
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 3 cut(s) 206, 779, 1974
HpaII CCGG 6 cut(s) 123, 279, 717, 800, 1350, 1963
HphI GGTGA 3 cut(s) 642, 1749, 2059
Hpy166II GTNNAC 4 cut(s) 63, 367, 744, 997
Hpy188III TCNNGA 9 cut(s) 123, 331, 398, 493, 1364, 1372, 1813, 1970, 2012
Hpy8I GTNNAC 4 cut(s) 63, 367, 744, 997
HpyAV CCTTC 4 cut(s) 231, 328, 1247, 1910
HpyCH4III ACNGT 8 cut(s) 364, 469, 587, 811, 866, 1001, 1436, 1748
HpyCH4IV ACGT 4 cut(s) 369, 497, 554, 789
HpyCH4V TGCA 9 cut(s) 89, 512, 657, 873, 974, 1061, 1073, 1175, 1986
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 3 cut(s) 137, 209, 1788
HpySE526I ACGT 4 cut(s) 369, 497, 554, 789
Hsp92I GRCGYC 1 cut(s) 241
HspAI GCGC 3 cut(s) 241, 260, 416
KasI GGCGCC 1 cut(s) 240
Kpn2I TCCGGA 1 cut(s) 122
Ksp22I TGATCA 2 cut(s) 1021, 1507
Kzo9I GATC 9 cut(s) 172, 268, 301, 410, 1021, 1461, 1507, 1621, 2026
LmnI GCTCC 3 cut(s) 1384, 1428, 2023
Lsp1109I GCAGC 5 cut(s) 269, 496, 516, 1085, 1219
LweI GCATC 4 cut(s) 430, 961, 1952, 1995
MaeI CTAG 5 cut(s) 42, 113, 1140, 1599, 2060
MaeII ACGT 4 cut(s) 369, 497, 554, 789
MaeIII GTNAC 9 cut(s) 151, 463, 626, 752, 1430, 1748, 1755, 2134, 2158
MalI GATC 9 cut(s) 174, 270, 303, 412, 1023, 1463, 1509, 1623, 2028
MboI GATC 9 cut(s) 172, 268, 301, 410, 1021, 1461, 1507, 1621, 2026
MboII GAAGA 7 cut(s) 335, 1129, 1155, 1198, 1201, 1454, 1457
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 1 cut(s) 1621
MlsI TGGCCA 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 231
Mly113I GGCGCC 1 cut(s) 241
MmeI TCCRAC 6 cut(s) 12, 540, 1060, 1362, 1509, 1626
Mox20I TGGCCA 1 cut(s) 231
MroI TCCGGA 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 342
MscI TGGCCA 1 cut(s) 231
MseI TTAA 5 cut(s) 486, 675, 818, 2067, 2121
MslI CAYNNNNRTG 3 cut(s) 652, 658, 969
Msp20I TGGCCA 1 cut(s) 231
MspA1I CMGCKG 2 cut(s) 529, 2024
MspI CCGG 6 cut(s) 123, 279, 717, 800, 1350, 1963
MspR9I CCNGG 4 cut(s) 253, 279, 1351, 1427
MunI CAATTG 1 cut(s) 695
Mva1269I GAATGC 1 cut(s) 1855
MvaI CCWGG 2 cut(s) 253, 1427
MwoI GCNNNNNNNGC 1 cut(s) 535
NarI GGCGCC 1 cut(s) 241
NciI CCSGG 2 cut(s) 279, 1351
NdeI CATATG 1 cut(s) 2055
NdeII GATC 9 cut(s) 172, 268, 301, 410, 1021, 1461, 1507, 1621, 2026
NlaIV GGNNCC 4 cut(s) 242, 610, 1049, 1424
NmeAIII GCCGAG 2 cut(s) 273, 1399
NmuCI GTSAC 3 cut(s) 151, 1755, 2158
NspI RCATGY 2 cut(s) 750, 1756
NspV TTCGAA 1 cut(s) 776
PagI TCATGA 3 cut(s) 1363, 1371, 1969
PceI AGGCCT 1 cut(s) 323
PciI ACATGT 2 cut(s) 746, 1752
PctI GAATGC 1 cut(s) 1855
PdmI GAANNNNTTC 1 cut(s) 342
PkrI GCNGC 5 cut(s) 259, 511, 531, 1075, 1234
PluTI GGCGCC 1 cut(s) 244
PscI ACATGT 2 cut(s) 746, 1752
PsiI TTATAA 2 cut(s) 1293, 1556
Psp6I CCWGG 2 cut(s) 251, 1425
PspGI CCWGG 2 cut(s) 251, 1425
PspN4I GGNNCC 4 cut(s) 242, 610, 1049, 1424
PspPI GGNCC 4 cut(s) 608, 714, 1047, 1283
PstI CTGCAG 2 cut(s) 514, 1075
PstNI CAGNNNCTG 1 cut(s) 532
PsuI RGATCY 1 cut(s) 1621
PvuII CAGCTG 2 cut(s) 529, 2024
RsaI GTAC 8 cut(s) 312, 361, 368, 910, 1438, 1472, 1578, 1723
RsaNI GTAC 8 cut(s) 311, 360, 367, 909, 1437, 1471, 1577, 1722
RseI CAYNNNNRTG 3 cut(s) 652, 658, 969
SaqAI TTAA 5 cut(s) 486, 675, 818, 2067, 2121
SatI GCNGC 5 cut(s) 258, 510, 530, 1074, 1233
Sau3AI GATC 9 cut(s) 172, 268, 301, 410, 1021, 1461, 1507, 1621, 2026
Sau96I GGNCC 4 cut(s) 608, 714, 1047, 1283
ScaI AGTACT 4 cut(s) 361, 910, 1472, 1578
ScrFI CCNGG 4 cut(s) 253, 279, 1351, 1427
SfaNI GCATC 4 cut(s) 430, 961, 1952, 1995
SfcI CTRYAG 2 cut(s) 510, 1071
SfoI GGCGCC 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 776
SinI GGWCC 3 cut(s) 608, 714, 1047
SmiMI CAYNNNNRTG 3 cut(s) 652, 658, 969
SmlI CTYRAG 2 cut(s) 306, 1569
SmoI CTYRAG 2 cut(s) 306, 1569
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 3 cut(s) 701, 1045, 1307
SspDI GGCGCC 1 cut(s) 240
SspMI CTAG 5 cut(s) 42, 113, 1140, 1599, 2060
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 4 cut(s) 251, 277, 1349, 1425
TaaI ACNGT 8 cut(s) 364, 469, 587, 811, 866, 1001, 1436, 1748
TaiI ACGT 4 cut(s) 372, 500, 557, 792
TaqI TCGA 5 cut(s) 171, 776, 1483, 2029, 2182
TatI WGTACW 4 cut(s) 359, 908, 1470, 1576
Tru1I TTAA 5 cut(s) 486, 675, 818, 2067, 2121
Tru9I TTAA 5 cut(s) 486, 675, 818, 2067, 2121
TseFI GTSAC 3 cut(s) 151, 1755, 2158
TseI GCWGC 5 cut(s) 257, 509, 529, 1073, 1232
Tsp45I GTSAC 3 cut(s) 151, 1755, 2158
TspGWI ACGGA 3 cut(s) 336, 914, 1454
VpaK11BI GGWCC 3 cut(s) 608, 714, 1047
XapI RAATTY 5 cut(s) 284, 488, 1299, 1496, 1873
XceI RCATGY 2 cut(s) 750, 1756
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 5 cut(s) 42, 113, 1140, 1599, 2060
ZrmI AGTACT 4 cut(s) 361, 910, 1472, 1578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.