pycom17g08520

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
6381353 .. 6382048
696 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08520.2

Sequence Viewer

Length: 495 bp
ATGTTTTTGTTATGTACTAAACGTTATGCAACAAAGATTTCGAAGCAGACAAAGGGAGGATTTGATTTTTCTGGCGAAAATGATCCATCATCAAATGGAAACGCTTATACCGTTGCTGACAAGTTTAACGATGATGAGGAGTATGTTTCTTATGGTGTCTCAGGTAGTTCAATAAAATTGAGGCTTAAGGTGAATCCAACTGGGCGAATTGATCTACTTAAGCGGACAGATCACATAGTACACGGTTTTCAGGGTTTTAGGCCAAAATTTCAAGAACAATGGAATATGGGGGATTGGTCCGGTGGTTGTGTTCCAGAAAAGTTTAAATCTGAATGCCTCCATAACCGCTCTTGCACAGCTTATGCATATGTAAGTGCGAGAACGAAACAGATATGGTACGGTGACTTGATGGATCTTGTAGACAATCAAATTGTCGGGCAACGAGATATTTATATTCGTGTTCATGGCTCCCAACTAAGTTTGATCAGGAGGTAA

Protein Analysis

165

Amino Acids

18.72

Weight (kDa)

9.03

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 420
AciI CCGC 2 cut(s) 223, 346
AclI AACGTT 1 cut(s) 22
AclWI GGATC 2 cut(s) 77, 420
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 3 cut(s) 16, 240, 398
AflII CTTAAG 2 cut(s) 185, 218
AgsI TTSAA 2 cut(s) 171, 272
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 2 cut(s) 77, 420
AoxI GGCC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 202, 413
AsuII TTCGAA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 297
BccI CCATC 2 cut(s) 94, 403
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 1 cut(s) 163
BfrI CTTAAG 2 cut(s) 185, 218
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 469
BmrI ACTGGG 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 41
Bsp143I GATC 5 cut(s) 82, 211, 229, 412, 483
BspACI CCGC 2 cut(s) 223, 346
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 469
BspPI GGATC 2 cut(s) 77, 420
BspT104I TTCGAA 1 cut(s) 41
BspTI CTTAAG 2 cut(s) 185, 218
BsrBI CCGCTC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 205
BssMI GATC 5 cut(s) 82, 211, 229, 412, 483
Bst4CI ACNGT 3 cut(s) 112, 245, 401
BstAFI CTTAAG 2 cut(s) 185, 218
BstBI TTCGAA 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 160, 476
BstKTI GATC 5 cut(s) 85, 214, 232, 415, 486
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 5 cut(s) 82, 211, 229, 412, 483
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 3 cut(s) 15, 239, 397
CviAII CATG 1 cut(s) 464
CviJI RGCY 4 cut(s) 184, 262, 359, 468
CviKI_1 RGCY 4 cut(s) 184, 262, 359, 468
CviQI GTAC 3 cut(s) 15, 239, 397
DdeI CTNAG 2 cut(s) 160, 476
DpnI GATC 5 cut(s) 84, 213, 231, 414, 485
DpnII GATC 5 cut(s) 82, 211, 229, 412, 483
DraI TTTAAA 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 367
FaeI CATG 1 cut(s) 467
FatI CATG 1 cut(s) 463
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 483
FblI GTMKAC 1 cut(s) 420
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 300
Hin1II CATG 1 cut(s) 467
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 202, 413
Hpy166II GTNNAC 2 cut(s) 241, 421
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 3 cut(s) 272, 314, 487
Hpy8I GTNNAC 2 cut(s) 241, 421
HpyCH4III ACNGT 3 cut(s) 112, 245, 401
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 29, 354, 365
HpyF3I CTNAG 2 cut(s) 160, 476
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 5 cut(s) 82, 211, 229, 412, 483
LmnI GCTCC 1 cut(s) 473
LpnPI CCDG 7 cut(s) 57, 147, 186, 236, 313, 327, 472
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 401
MalI GATC 5 cut(s) 84, 213, 231, 414, 485
MbiI CCGCTC 1 cut(s) 348
MboI GATC 5 cut(s) 82, 211, 229, 412, 483
MflI RGATCY 1 cut(s) 412
MluCI AATT 4 cut(s) 176, 207, 266, 429
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 5 cut(s) 50, 130, 174, 347, 483
Mph1103I ATGCAT 1 cut(s) 367
MseI TTAA 4 cut(s) 126, 186, 219, 324
MspCI CTTAAG 2 cut(s) 185, 218
MspI CCGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 338
NdeI CATATG 1 cut(s) 367
NdeII GATC 5 cut(s) 82, 211, 229, 412, 483
NlaIII CATG 1 cut(s) 467
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 367
NspV TTCGAA 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 193
Psp1406I AACGTT 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 3 cut(s) 16, 240, 398
RsaNI GTAC 3 cut(s) 15, 239, 397
SaqAI TTAA 4 cut(s) 126, 186, 219, 324
Sau3AI GATC 5 cut(s) 82, 211, 229, 412, 483
Sau96I GGNCC 1 cut(s) 297
SetI ASST 5 cut(s) 25, 166, 192, 361, 494
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 185, 218
SmoI CTYRAG 2 cut(s) 185, 218
Sse9I AATT 4 cut(s) 176, 207, 266, 429
SsiI CCGC 2 cut(s) 223, 346
TaaI ACNGT 3 cut(s) 112, 245, 401
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 41
TasI AATT 4 cut(s) 176, 207, 266, 429
TatI WGTACW 2 cut(s) 14, 238
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 4 cut(s) 126, 186, 219, 324
Tru9I TTAA 4 cut(s) 126, 186, 219, 324
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 452
Vha464I CTTAAG 2 cut(s) 185, 218
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.