Rroxscaffold_1G00014330

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000114
Physical Location & Seq
Forward (+)
17623598 .. 17628227
4630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014330.1

Sequence Viewer

Length: 339 bp
ATGAGAGAAACATGTCTGCCTCATGAAGCTTTAAGGTGTATCCATGTTGCGTTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGACCAACAATGTCTTCCATAGTTCACATGCTGGTCAATGAAGCAACACCACTTCCCCTTTTCAAAGAACCTGCATATTCAACGGAGACTACTTTTGGTGATGTTGGTCCTTCTCCATCAAATGGAGTCACCATTACTATCTCGAAGGTCGATAGAGGGGTGCAACAGATGATTTCGTTTCTTTTTAGCATTTGGAGTAATGTGAAACCAAAATCAAATTACATCATTTCAACCATGAATTTGATATCGTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

112

Amino Acids

12.4

Weight (kDa)

6.81

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 203
AcsI RAATTY 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 4 cut(s) 65, 145, 162, 312
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AluBI AGCT 3 cut(s) 29, 71, 77
AluI AGCT 3 cut(s) 29, 71, 77
Alw26I GTCTC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 191, 202
AvaII GGWCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 87
BccI CCATC 1 cut(s) 205
BciVI GTATCC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 79
BspHI TCATGA 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 160
BssMI GATC 1 cut(s) 79
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 79
BstNSI RCATGY 2 cut(s) 15, 112
BstV2I GAAGAC 1 cut(s) 87
BsuI GTATCC 1 cut(s) 50
BveI ACCTGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 5 cut(s) 12, 23, 44, 109, 316
CviJI RGCY 3 cut(s) 29, 71, 77
CviKI_1 RGCY 3 cut(s) 29, 71, 77
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 188
EcoRV GATATC 1 cut(s) 327
FaeI CATG 5 cut(s) 15, 26, 47, 112, 319
FaiI YATR 7 cut(s) 13, 24, 45, 101, 110, 157, 317
FatI CATG 5 cut(s) 11, 22, 43, 108, 315
GsuI CTGGAG 1 cut(s) 57
Hin1II CATG 5 cut(s) 15, 26, 47, 112, 319
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 207
HphI GGTGA 2 cut(s) 191, 202
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 23, 65, 223
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 201, 220
HpyCH4V TGCA 2 cut(s) 155, 244
Hsp92II CATG 5 cut(s) 15, 26, 47, 112, 319
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 87, 98, 165
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 87
MluCI AATT 2 cut(s) 298, 319
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 2 cut(s) 30, 230
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 77
NdeII GATC 1 cut(s) 79
NlaIII CATG 5 cut(s) 15, 26, 47, 112, 319
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 2 cut(s) 15, 112
PagI TCATGA 1 cut(s) 22
PciI ACATGT 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 203
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PscI ACATGT 1 cut(s) 11
PspPI GGNCC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 216
SetI ASST 7 cut(s) 31, 38, 73, 79, 154, 231, 338
SinI GGWCC 1 cut(s) 188
Sse9I AATT 2 cut(s) 298, 319
TaqI TCGA 3 cut(s) 82, 224, 231
TasI AATT 2 cut(s) 298, 319
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 39, 135, 332
TspGWI ACGGA 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 319
XceI RCATGY 2 cut(s) 15, 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.