Rw5G041010

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000114
Physical Location & Seq
Reverse (-)
72392776 .. 72394472
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G041010.1

Sequence Viewer

Length: 1047 bp
ATGCTTCTAAGTTTTAAAAGTAACGTTGAAATGTACAGGGAGTATAGTGAGATTATAAGGAATGTTAGTGCTGGAGGTGCACAGAATGAAACAGAACTACCAATCTTTAGTTTAAGGAGTATATTAGCTGCTACAAACAATTTCTATGAAGCTAATAAACTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGGATTTTGCCTGAAAATCAAGAAGTAGCCATAAAGAGACTGTCAAAGAAATCCGGGCAAGGATATAAGGAGTTCATGAATGAGTTAAAACTTATAGCCAAGCTTCAACATACAAATCTTGTTAGGCTCTTGGGTTGCTGTATTGAAGAGGATGAATTGATATTGATCTATGAGTACATGCCCAATCGAAGTTTGGACAAATTTTTGTTTGATCCATCTGAAAACACAAGATTGGATTGGAGTAAACGTTTTCAAATCATAGAAGGTATTGCTCAAGGGGTACTTTATATCCACAAGCACTCCAGATTGAAGATCATTCACAGGGATCTAAAAGCTAGTAATGTTCTGTTGGATGGAGAAATGAATCCCAAAATTTCCGACTTTGGAATGGCAAAGATTTTCAACATGAATCAAACAGAAGCAAATACTAACAGGGTTGTTGGAACATACGGTTACATGTCTCCCGAGTATGCACGTTATGGCCATTTCTCTGAGAAATTGGATGTGTTCAGCTTTGGAGTGTTGCTGTTGGAGATTGTAAGTGGAAAAAAGAATGGTGCTTTCCATCATGTTGAACATTCACCAACTCTTGCTGGATGGGCTTGGAAATTATGGAAAGAAGGTAAAGGAATGGAGGTAATTGATGCATCAATGAGAGAAACATGTCTCCCTCATGAAGCTTTAAGATCTCCAGCTGATCGACCAGCAATGTCTTCCGTAGTTCACATGCTGGCCAATGAAGCAATACCACTTCCACTCTTCAAAGAACCTGCATTTTCAACGGAGAGTACTTTTTGTGATGTTGGTTCTTCTCCATCAAATGGAGTCACCATTACTCTCCCAGAAGGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

348

Amino Acids

39.18

Weight (kDa)

6.39

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 51 - 248 2.3e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 52 - 249 2.6e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 56, 189
Acc36I ACCTGC 1 cut(s) 970
AccB7I CCANNNNNTGG 1 cut(s) 1013
AclI AACGTT 2 cut(s) 24, 439
AclWI GGATC 2 cut(s) 398, 525
AcoI YGGCCR 2 cut(s) 673, 924
AcsI RAATTY 2 cut(s) 392, 564
AfaI GTAC 4 cut(s) 35, 368, 474, 982
AfiI CCNNNNNNNGG 1 cut(s) 1013
AflIII ACRYGT 2 cut(s) 648, 854
AgsI TTSAA 9 cut(s) 29, 299, 338, 446, 502, 595, 767, 955, 972
AluBI AGCT 7 cut(s) 128, 152, 295, 527, 705, 872, 887
AluI AGCT 7 cut(s) 128, 152, 295, 527, 705, 872, 887
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 3 cut(s) 223, 657, 863
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 2 cut(s) 398, 525
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 3 cut(s) 178, 673, 924
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 392, 564
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 765, 1012
AvaI CYCGRG 1 cut(s) 656
BaeGI GKGCMC 1 cut(s) 82
BalI TGGCCA 2 cut(s) 675, 926
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 115
BccI CCATC 5 cut(s) 415, 539, 765, 783, 1015
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 3 cut(s) 223, 657, 863
BfaI CTAG 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 970
BglII AGATCT 1 cut(s) 878
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 982
Bme1390I CCNGG 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 826, 848
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 3 cut(s) 93, 478, 867
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 356
BsaXI ACNNNNNCTCC 4 cut(s) 424, 454, 476, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 1013
Bse3DI GCAATG 1 cut(s) 906
Bse8I GATNNNNATC 1 cut(s) 356
BseGI GGATG 4 cut(s) 349, 550, 700, 794
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 1013
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 1 cut(s) 675
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 3 cut(s) 180, 675, 926
BsiHKAI GWGCWC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 1013
BsmAI GTCTC 3 cut(s) 223, 657, 863
BsnI GGCC 3 cut(s) 180, 675, 926
BsoBI CYCGRG 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 6 cut(s) 357, 403, 504, 517, 878, 889
BspANI GGCC 3 cut(s) 180, 675, 926
BspCNI CTCAG 1 cut(s) 676
BspHI TCATGA 2 cut(s) 267, 865
BspMI ACCTGC 1 cut(s) 970
BspPI GGATC 2 cut(s) 398, 525
BsrDI GCAATG 1 cut(s) 906
BsrGI TGTACA 1 cut(s) 33
BssMI GATC 6 cut(s) 357, 403, 504, 517, 878, 889
Bst4CI ACNGT 2 cut(s) 234, 644
Bst6I CTCTTC 2 cut(s) 333, 956
BstAUI TGTACA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 924
BstDEI CTNAG 2 cut(s) 8, 684
BstF5I GGATG 4 cut(s) 349, 550, 700, 794
BstKTI GATC 6 cut(s) 360, 406, 507, 520, 881, 892
BstMAI GTCTC 3 cut(s) 223, 657, 863
BstMBI GATC 6 cut(s) 357, 403, 504, 517, 878, 889
BstMWI GCNNNNNNNGC 3 cut(s) 77, 791, 932
BstNSI RCATGY 4 cut(s) 373, 652, 858, 922
BstSCI CCNGG 1 cut(s) 245
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 517, 878
BstYI RGATCY 2 cut(s) 517, 878
BsuRI GGCC 3 cut(s) 180, 675, 926
BtsCI GGATG 4 cut(s) 349, 550, 700, 794
BveI ACCTGC 1 cut(s) 970
Cac8I GCNNGC 1 cut(s) 924
CciI TCATGA 2 cut(s) 267, 865
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 4 cut(s) 34, 367, 473, 981
CviAII CATG 8 cut(s) 268, 370, 598, 649, 761, 855, 866, 919
CviQI GTAC 4 cut(s) 34, 367, 473, 981
DdeI CTNAG 2 cut(s) 8, 684
DpnI GATC 6 cut(s) 359, 405, 506, 519, 880, 891
DpnII GATC 6 cut(s) 357, 403, 504, 517, 878, 889
DraI TTTAAA 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 673, 924
Eam1104I CTCTTC 2 cut(s) 333, 956
EarI CTCTTC 2 cut(s) 333, 956
Eco88I CYCGRG 1 cut(s) 656
EcoT22I ATGCAT 1 cut(s) 841
FaeI CATG 8 cut(s) 271, 373, 601, 652, 764, 858, 869, 922
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FatI CATG 8 cut(s) 267, 369, 597, 648, 760, 854, 865, 918
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 4 cut(s) 356, 557, 707, 801
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 528
GluI GCNGC 1 cut(s) 129
GsuI CTGGAG 3 cut(s) 93, 478, 867
HaeIII GGCC 3 cut(s) 180, 675, 926
HapII CCGG 1 cut(s) 246
Hin1II CATG 8 cut(s) 271, 373, 601, 652, 764, 858, 869, 922
HindIII AAGCTT 2 cut(s) 293, 870
HinfI GANTC 3 cut(s) 556, 601, 1017
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 765, 1012
Hpy166II GTNNAC 3 cut(s) 80, 437, 916
Hpy188I TCNGA 3 cut(s) 412, 571, 685
Hpy188III TCNNGA 5 cut(s) 212, 268, 495, 656, 866
Hpy8I GTNNAC 3 cut(s) 80, 437, 916
HpyAV CCTTC 3 cut(s) 449, 806, 1031
HpyCH4III ACNGT 2 cut(s) 234, 644
HpyCH4IV ACGT 3 cut(s) 24, 439, 667
HpyCH4V TGCA 4 cut(s) 80, 665, 839, 965
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 791, 932
HpyF3I CTNAG 2 cut(s) 8, 684
HpySE526I ACGT 3 cut(s) 24, 439, 667
Hsp92II CATG 8 cut(s) 271, 373, 601, 652, 764, 858, 869, 922
Kzo9I GATC 6 cut(s) 357, 403, 504, 517, 878, 889
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 826, 848
MaeI CTAG 1 cut(s) 528
MaeII ACGT 3 cut(s) 24, 439, 667
MaeIII GTNAC 3 cut(s) 20, 644, 1018
MalI GATC 6 cut(s) 359, 405, 506, 519, 880, 891
MboI GATC 6 cut(s) 357, 403, 504, 517, 878, 889
MboII GAAGA 5 cut(s) 350, 514, 897, 943, 993
MflI RGATCY 2 cut(s) 517, 878
MhlI GDGCHC 1 cut(s) 82
MlsI TGGCCA 2 cut(s) 675, 926
MluCI AATT 7 cut(s) 139, 347, 392, 564, 689, 800, 831
MluNI TGGCCA 2 cut(s) 675, 926
MlyI GAGTC 1 cut(s) 1026
MmeI TCCRAC 4 cut(s) 522, 594, 613, 702
MnlI CCTC 6 cut(s) 68, 160, 164, 334, 820, 873
Mox20I TGGCCA 2 cut(s) 675, 926
Mph1103I ATGCAT 1 cut(s) 841
MscI TGGCCA 2 cut(s) 675, 926
MseI TTAA 4 cut(s) 15, 113, 278, 875
Msp20I TGGCCA 2 cut(s) 675, 926
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 247
MwoI GCNNNNNNNGC 3 cut(s) 77, 791, 932
NciI CCSGG 1 cut(s) 247
NdeII GATC 6 cut(s) 357, 403, 504, 517, 878, 889
NlaIII CATG 8 cut(s) 271, 373, 601, 652, 764, 858, 869, 922
NmuCI GTSAC 1 cut(s) 1018
NsiI ATGCAT 1 cut(s) 841
NspI RCATGY 4 cut(s) 373, 652, 858, 922
PagI TCATGA 2 cut(s) 267, 865
PciI ACATGT 2 cut(s) 648, 854
PfeI GAWTC 2 cut(s) 556, 601
PflMI CCANNNNNTGG 1 cut(s) 1013
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 1025
PpsI GAGTC 1 cut(s) 1025
PscI ACATGT 2 cut(s) 648, 854
PsiI TTATAA 2 cut(s) 56, 189
Psp1406I AACGTT 2 cut(s) 24, 439
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 2 cut(s) 517, 878
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 4 cut(s) 35, 368, 474, 982
RsaNI GTAC 4 cut(s) 34, 367, 473, 981
SaqAI TTAA 4 cut(s) 15, 113, 278, 875
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 6 cut(s) 357, 403, 504, 517, 878, 889
Sau96I GGNCC 1 cut(s) 179
ScaI AGTACT 1 cut(s) 982
SchI GAGTC 1 cut(s) 1026
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 2 cut(s) 826, 848
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 7 cut(s) 139, 347, 392, 564, 689, 800, 831
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 234, 644
TaiI ACGT 3 cut(s) 27, 442, 670
TaqI TCGA 3 cut(s) 379, 892, 1042
TasI AATT 7 cut(s) 139, 347, 392, 564, 689, 800, 831
TatI WGTACW 3 cut(s) 33, 366, 980
TfiI GAWTC 2 cut(s) 556, 601
Tru1I TTAA 4 cut(s) 15, 113, 278, 875
Tru9I TTAA 4 cut(s) 15, 113, 278, 875
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 9 cut(s) 102, 162, 256, 284, 360, 569, 614, 882, 945
TspGWI ACGGA 2 cut(s) 898, 989
Van91I CCANNNNNTGG 1 cut(s) 1013
VneI GTGCAC 1 cut(s) 78
XapI RAATTY 2 cut(s) 392, 564
XceI RCATGY 4 cut(s) 373, 652, 858, 922
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XspI CTAG 1 cut(s) 528
ZrmI AGTACT 1 cut(s) 982
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.