Rh4CG140900

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000114
Physical Location & Seq
Forward (+)
27988009 .. 27990880
2872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG140900.1

Sequence Viewer

Length: 1887 bp
ATGGCTGAAGCGATGAAATTGATTGGGCTTTTGTTGGTGTTTCTCTCACTACTTTCTCTCTCTACTTCTCAATCTCCAAATACAATTACCAACAGAACAACATGCCCCATTGATCTCAGCTATGTCCTTAGAATCCCCTTCAACTCTTCATCATGCAAAAATTTCCAAGCCCCTCCCAGAACCCCTCAAATGGACAGGACCAATATATCATGTTGTCAAACCCTATTGTCTCTCTTTGGCATAGGCCTTGCTCAACACCTCAAGGCCACCACTCTTTTCCATCTCCCCAACATAGCAGCCTCAAATTCTTGCCTCCAAAACTACCAGTCCAAGCTTACCTCTCTAGCACTCCCTTCCAATCTTGTCTCTTATTGTTTTGACCCTTTACAATTTGTAACTAGCCCAAATTTCTGTGCGCAGATTGAGTCTACCCAAGATTGGGTCTCCAAGCTTAATCAGACCACTGCACTTGACTCTGCATGCAAGCCAGACCTCACTAATCTCTCATCCTGTGATGCTTGCGCAGCGGCTGGCTTTAAAATTCATACACAATTAAAAGCCATTGATGGTAACAGTTCTCACTCTAGAGATTGTTGGTACTTTACAATTCTGTATGCAGCAGCTGGTATGATCAACGACTCTGAACCTGAAAGTGAGGGTGCCGTATCTTGTATTTTCCGTTTATCTTTATTGAATGACACTCTTGTGGGTTTGCGTAAAAAGAGCTATACCGCTCTTGTAACTGCAGTAGTCTCAGCAACAGGAGGGTTGCTTACAATATTATTTTTATACTTCTTATGGAAGAAGTCTTTGGGAAAGAAAAGGGCATATAGTGAGAATATTAGGAATGTTAGTGCTGGAGACGGGAAGAATGATACAGAACTACCGGTCTCAAGTTTAAGGAGTATATTAGCTGCTACAAACAACTTCTCTGAAGCTAATAAACTAGGAGAGGGAGGGTTTGGCCATGTTTATAAGGGCATCTTAAATGAAAATAAAGAGGTAGCCATTAAAAGACTGTCAAAGAAGTCAGGGCAAGGATATCAAGAGTTCATGAATGAGTTAAAACTTATAGCAAAGCTCCAACATAACAATCTTGTTAGGCTCTTGGGTTGCTGTATTGAAGAGGAAGAAATGATATTAATCTACGAGTACATGCCTAATCGAAGTTTGGACAAATTTTTGTTTGATCCAAGGGAAAACATAAAATTGGATTGGGGTAAACGCTTTCGAATTATAGAAGGTACAGCTCAAGGAGTACTTTATATTCACAAGCACTCCAGATTGAAAATCATTCACAGGGATCTAAAAGCAAGTAATGTCCTGTTGGATGAAGAAATGAACCCTAAAATTTCAGATTTTGGAATGGCAAAGATTTTCGAGATAAATCAAACTGAAGCAAATACCAACAGGGTTGTCGGGACATATGGTTATATGTCACCTGAGTATGCACGCTATGGCCATTTTTCTGAGAAATTGGATGTATTTAGTTTTGGAGTGTTGTTGCTGGAGATTGTAAGTGGAAGGAGGAATTCCGCTTTCTATCATCTTGAACACCCGGTAACTCTTGCTGGATGGGCATGGAAACTATGGAAAGAAGGTAGAGGAATGGAGGTGATTGATGAATCAGTGAGAGAAACGTGTCTGCCTCATGAAGCTTTAAGGTGTATCCATGTAGCATTATTGTGTGTTCAAGAAGATCCAGTTGATCGACCAACCATGTCTTCTGTAATTCACATGTTGGCTAATGAAGCTACATCACTTCCACTATTCAAAGAACCTGCATTTTCAACACATAGTGATTATAAAGCTATTTGCTCTTCTTCTCCATCATCTAGCATTTTTTCGAACAATCTGGTAACCATTAGCATCCCTGAAGGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

628

Amino Acids

69.9

Weight (kDa)

7.8

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 31 - 198 5.5e-41 SPARK
Pkinase PF00069 311 - 579 3.4e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 313 - 581 2.5e-52 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 975, 1806
Acc16I TGCGCA 2 cut(s) 417, 523
Acc36I ACCTGC 1 cut(s) 1789
AccB1I GGYRCC 1 cut(s) 659
AccBSI CCGCTC 1 cut(s) 734
AccI GTMKAC 1 cut(s) 428
AciI CCGC 3 cut(s) 527, 732, 1536
AclWI GGATC 3 cut(s) 1184, 1311, 1694
AcoI YGGCCR 2 cut(s) 964, 1459
AcsI RAATTY 7 cut(s) 160, 304, 406, 540, 1178, 1350, 1531
AcuI CTGAAG 3 cut(s) 27, 954, 1416
AdeI CACNNNGTG 1 cut(s) 1799
AfaI GTAC 4 cut(s) 599, 1154, 1246, 1260
AfiI CCNNNNNNNGG 3 cut(s) 190, 438, 439
AflIII ACRYGT 2 cut(s) 1640, 1737
AgeI ACCGGT 1 cut(s) 886
AgsI TTSAA 8 cut(s) 142, 694, 1124, 1288, 1553, 1694, 1774, 1791
AjuI GAANNNNNNNTTGG 4 cut(s) 794, 826, 1708, 1740
AleI CACNNNNGTG 1 cut(s) 704
Alw26I GTCTC 6 cut(s) 234, 370, 448, 757, 855, 895
AlwI GGATC 3 cut(s) 1184, 1311, 1694
AlwNI CAGNNNCTG 2 cut(s) 530, 623
AoxI GGCC 4 cut(s) 244, 264, 964, 1459
ApeKI GCWGC 5 cut(s) 296, 524, 617, 620, 914
ApoI RAATTY 7 cut(s) 160, 304, 406, 540, 1178, 1350, 1531
AseI ATTAAT 1 cut(s) 1142
AsiGI ACCGGT 1 cut(s) 886
AspLEI GCGC 2 cut(s) 418, 524
AspS9I GGNCC 1 cut(s) 198
AsuC2I CCSGG 1 cut(s) 1559
AsuHPI GGTGA 2 cut(s) 1431, 1627
AsuII TTCGAA 2 cut(s) 1231, 1847
AvaII GGWCC 1 cut(s) 198
BalI TGGCCA 2 cut(s) 966, 1461
BanI GGYRCC 1 cut(s) 659
BbsI GAAGAC 1 cut(s) 1716
BbvI GCAGC 5 cut(s) 308, 536, 629, 632, 901
BccI CCATC 4 cut(s) 288, 560, 1569, 1837
BceAI ACGGC 1 cut(s) 647
BciVI GTATCC 1 cut(s) 1679
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 1 cut(s) 1559
BcoDI GTCTC 6 cut(s) 234, 370, 448, 757, 855, 895
BfaI CTAG 5 cut(s) 344, 399, 585, 947, 1836
BfmI CTRYAG 1 cut(s) 744
BfuAI ACCTGC 1 cut(s) 1789
BfuI GTATCC 1 cut(s) 1679
BisI GCNGC 6 cut(s) 297, 525, 528, 618, 621, 915
BlsI GCNGC 6 cut(s) 298, 526, 529, 619, 622, 916
BmcAI AGTACT 1 cut(s) 1260
Bme1390I CCNGG 1 cut(s) 1559
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 661
BmrFI CCNGG 1 cut(s) 1559
BmsI GCATC 3 cut(s) 505, 990, 1878
BpiI GAAGAC 1 cut(s) 1716
BpmI CTGGAG 3 cut(s) 879, 1264, 1529
Bpu14I TTCGAA 2 cut(s) 1231, 1847
BpuEI CTTGAG 3 cut(s) 245, 877, 1236
BpuMI CCSGG 1 cut(s) 1559
BsaBI GATNNNNATC 1 cut(s) 1142
BsaI GGTCTC 2 cut(s) 448, 895
BsaJI CCNNGG 1 cut(s) 1193
BsaWI WCCGGW 1 cut(s) 886
BsaXI ACNNNNNCTCC 2 cut(s) 1262, 1292
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 438, 439
Bse118I RCCGGY 1 cut(s) 886
Bse1I ACTGG 2 cut(s) 325, 1703
Bse8I GATNNNNATC 1 cut(s) 1142
BseDI CCNNGG 1 cut(s) 1193
BseGI GGATG 5 cut(s) 506, 1336, 1486, 1580, 1869
BseJI GATNNNNATC 1 cut(s) 1142
BseLI CCNNNNNNNGG 3 cut(s) 190, 438, 439
BseMII CTCAG 4 cut(s) 130, 768, 1434, 1461
BseNI ACTGG 2 cut(s) 325, 1703
BseXI GCAGC 5 cut(s) 308, 536, 629, 632, 901
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 4 cut(s) 246, 266, 966, 1461
BshNI GGYRCC 1 cut(s) 659
BshTI ACCGGT 1 cut(s) 886
BsiSI CCGG 2 cut(s) 887, 1559
BslFI GGGAC 1 cut(s) 1435
BslI CCNNNNNNNGG 3 cut(s) 190, 438, 439
BsmAI GTCTC 6 cut(s) 234, 370, 448, 757, 855, 895
BsmBI CGTCTC 1 cut(s) 855
BsmFI GGGAC 1 cut(s) 1435
BsnI GGCC 4 cut(s) 246, 266, 966, 1461
Bso31I GGTCTC 2 cut(s) 448, 895
Bsp119I TTCGAA 2 cut(s) 1231, 1847
Bsp143I GATC 6 cut(s) 112, 630, 1189, 1303, 1699, 1708
BspACI CCGC 3 cut(s) 527, 732, 1536
BspANI GGCC 4 cut(s) 246, 266, 966, 1461
BspCNI CTCAG 4 cut(s) 129, 767, 1435, 1462
BspHI TCATGA 2 cut(s) 1053, 1651
BspLI GGNNCC 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 748
BspMI ACCTGC 1 cut(s) 1789
BspPI GGATC 3 cut(s) 1184, 1311, 1694
BspQI GCTCTTC 1 cut(s) 1825
BspT104I TTCGAA 2 cut(s) 1231, 1847
BspT107I GGYRCC 1 cut(s) 659
BspTNI GGTCTC 2 cut(s) 448, 895
BsrBI CCGCTC 1 cut(s) 734
BsrFI RCCGGY 1 cut(s) 886
BsrI ACTGG 2 cut(s) 325, 1703
BssAI RCCGGY 1 cut(s) 886
BssECI CCNNGG 1 cut(s) 1193
BssMI GATC 6 cut(s) 112, 630, 1189, 1303, 1699, 1708
BssT1I CCWWGG 1 cut(s) 1193
Bst4CI ACNGT 2 cut(s) 575, 1020
Bst6I CTCTTC 3 cut(s) 151, 1119, 1825
BstBI TTCGAA 2 cut(s) 1231, 1847
BstC8I GCNNGC 5 cut(s) 481, 485, 520, 532, 1453
BstDEI CTNAG 5 cut(s) 116, 128, 754, 1443, 1470
BstEII GGTNACC 1 cut(s) 1858
BstF5I GGATG 5 cut(s) 506, 1336, 1486, 1580, 1869
BstHHI GCGC 2 cut(s) 418, 524
BstKTI GATC 6 cut(s) 115, 633, 1192, 1306, 1702, 1711
BstMAI GTCTC 6 cut(s) 234, 370, 448, 757, 855, 895
BstMBI GATC 6 cut(s) 112, 630, 1189, 1303, 1699, 1708
BstMWI GCNNNNNNNGC 3 cut(s) 524, 1577, 1751
BstNSI RCATGY 4 cut(s) 105, 483, 1159, 1741
BstPI GGTNACC 1 cut(s) 1858
BstSCI CCNGG 1 cut(s) 1557
BstSFI CTRYAG 1 cut(s) 744
BstV1I GCAGC 5 cut(s) 308, 536, 629, 632, 901
BstV2I GAAGAC 1 cut(s) 1716
BstX2I RGATCY 2 cut(s) 1303, 1699
BstYI RGATCY 2 cut(s) 1303, 1699
BsuI GTATCC 1 cut(s) 1679
BsuRI GGCC 4 cut(s) 246, 266, 966, 1461
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 5 cut(s) 506, 1336, 1486, 1580, 1869
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 2 cut(s) 462, 1635
BveI ACCTGC 1 cut(s) 1789
Cac8I GCNNGC 5 cut(s) 481, 485, 520, 532, 1453
CaiI CAGNNNCTG 2 cut(s) 530, 623
CciI TCATGA 2 cut(s) 1053, 1651
CfoI GCGC 2 cut(s) 418, 524
Cfr10I RCCGGY 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 4 cut(s) 598, 1153, 1245, 1259
CspAI ACCGGT 1 cut(s) 886
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviQI GTAC 4 cut(s) 598, 1153, 1245, 1259
DdeI CTNAG 5 cut(s) 116, 128, 754, 1443, 1470
DpnI GATC 6 cut(s) 114, 632, 1191, 1305, 1701, 1710
DpnII GATC 6 cut(s) 112, 630, 1189, 1303, 1699, 1708
DraI TTTAAA 1 cut(s) 538
DraIII CACNNNGTG 1 cut(s) 1799
EaeI YGGCCR 2 cut(s) 964, 1459
Eam1104I CTCTTC 3 cut(s) 151, 1119, 1825
EarI CTCTTC 3 cut(s) 151, 1119, 1825
Eco130I CCWWGG 1 cut(s) 1193
Eco147I AGGCCT 1 cut(s) 246
Eco31I GGTCTC 2 cut(s) 448, 895
Eco32I GATATC 1 cut(s) 1043
Eco47I GGWCC 1 cut(s) 198
Eco57I CTGAAG 3 cut(s) 27, 954, 1416
Eco91I GGTNACC 1 cut(s) 1858
EcoO65I GGTNACC 1 cut(s) 1858
EcoRI GAATTC 1 cut(s) 1531
EcoRV GATATC 1 cut(s) 1043
EcoT14I CCWWGG 1 cut(s) 1193
ErhI CCWWGG 1 cut(s) 1193
Esp3I CGTCTC 1 cut(s) 855
FalI AAGNNNNNCTT 4 cut(s) 968, 1000, 1245, 1277
FaqI GGGAC 1 cut(s) 1435
FauNDI CATATG 1 cut(s) 1426
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 6 cut(s) 297, 525, 528, 618, 621, 915
FokI GGATG 5 cut(s) 493, 1343, 1493, 1587, 1856
Fsp4HI GCNGC 6 cut(s) 297, 525, 528, 618, 621, 915
FspBI CTAG 5 cut(s) 344, 399, 585, 947, 1836
FspI TGCGCA 2 cut(s) 417, 523
GlaI GCGC 2 cut(s) 417, 523
GluI GCNGC 6 cut(s) 297, 525, 528, 618, 621, 915
GsuI CTGGAG 3 cut(s) 879, 1264, 1529
HaeIII GGCC 4 cut(s) 246, 266, 966, 1461
HapII CCGG 2 cut(s) 887, 1559
HhaI GCGC 2 cut(s) 418, 524
Hin6I GCGC 2 cut(s) 416, 522
HinP1I GCGC 2 cut(s) 416, 522
HindIII AAGCTT 3 cut(s) 332, 449, 1656
HinfI GANTC 5 cut(s) 132, 425, 473, 638, 1625
HpaII CCGG 2 cut(s) 887, 1559
HphI GGTGA 2 cut(s) 1431, 1627
Hpy166II GTNNAC 2 cut(s) 429, 1223
Hpy188I TCNGA 5 cut(s) 459, 643, 934, 1357, 1471
Hpy188III TCNNGA 9 cut(s) 585, 1046, 1054, 1281, 1381, 1420, 1550, 1652, 1694
Hpy8I GTNNAC 2 cut(s) 429, 1223
HpyAV CCTTC 6 cut(s) 148, 363, 1235, 1518, 1592, 1871
HpyCH4III ACNGT 2 cut(s) 575, 1020
HpyCH4IV ACGT 1 cut(s) 1640
HpyCH4V TGCA 8 cut(s) 156, 467, 479, 483, 617, 746, 1451, 1784
HpyF10VI GCNNNNNNNGC 3 cut(s) 524, 1577, 1751
HpyF3I CTNAG 5 cut(s) 116, 128, 754, 1443, 1470
HpySE526I ACGT 1 cut(s) 1640
HspAI GCGC 2 cut(s) 416, 522
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 6 cut(s) 112, 630, 1189, 1303, 1699, 1708
LguI GCTCTTC 1 cut(s) 1825
LmnI GCTCC 1 cut(s) 1086
Lsp1109I GCAGC 5 cut(s) 308, 536, 629, 632, 901
LweI GCATC 3 cut(s) 505, 990, 1878
MaeI CTAG 5 cut(s) 344, 399, 585, 947, 1836
MaeII ACGT 1 cut(s) 1640
MaeIII GTNAC 6 cut(s) 394, 569, 739, 1437, 1561, 1858
MalI GATC 6 cut(s) 114, 632, 1191, 1305, 1701, 1710
MbiI CCGCTC 1 cut(s) 734
MboI GATC 6 cut(s) 112, 630, 1189, 1303, 1699, 1708
MflI RGATCY 2 cut(s) 1303, 1699
MlsI TGGCCA 2 cut(s) 966, 1461
MluNI TGGCCA 2 cut(s) 966, 1461
MlyI GAGTC 3 cut(s) 434, 467, 632
MmeI TCCRAC 2 cut(s) 1108, 1308
Mox20I TGGCCA 2 cut(s) 966, 1461
MscI TGGCCA 2 cut(s) 966, 1461
MseI TTAA 9 cut(s) 453, 537, 554, 899, 986, 1011, 1064, 1142, 1661
MslI CAYNNNNRTG 2 cut(s) 704, 1684
Msp20I TGGCCA 2 cut(s) 966, 1461
MspA1I CMGCKG 2 cut(s) 527, 623
MspI CCGG 2 cut(s) 887, 1559
MspR9I CCNGG 1 cut(s) 1559
MwoI GCNNNNNNNGC 3 cut(s) 524, 1577, 1751
NciI CCSGG 1 cut(s) 1559
NdeI CATATG 1 cut(s) 1426
NdeII GATC 6 cut(s) 112, 630, 1189, 1303, 1699, 1708
NlaIV GGNNCC 1 cut(s) 661
NmuCI GTSAC 1 cut(s) 1437
NsbI TGCGCA 2 cut(s) 417, 523
NspI RCATGY 4 cut(s) 105, 483, 1159, 1741
NspV TTCGAA 2 cut(s) 1231, 1847
OliI CACNNNNGTG 1 cut(s) 704
PaeI GCATGC 1 cut(s) 483
PagI TCATGA 2 cut(s) 1053, 1651
PceI AGGCCT 1 cut(s) 246
PciI ACATGT 1 cut(s) 1737
PciSI GCTCTTC 1 cut(s) 1825
PfeI GAWTC 2 cut(s) 132, 1625
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 6 cut(s) 298, 526, 529, 619, 622, 916
PleI GAGTC 3 cut(s) 433, 467, 632
PpsI GAGTC 3 cut(s) 433, 467, 632
PscI ACATGT 1 cut(s) 1737
PshBI ATTAAT 1 cut(s) 1142
PsiI TTATAA 2 cut(s) 975, 1806
PspEI GGTNACC 1 cut(s) 1858
PspN4I GGNNCC 1 cut(s) 661
PspPI GGNCC 1 cut(s) 198
PstI CTGCAG 1 cut(s) 748
PstNI CAGNNNCTG 2 cut(s) 530, 623
PsuI RGATCY 2 cut(s) 1303, 1699
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 4 cut(s) 599, 1154, 1246, 1260
RsaNI GTAC 4 cut(s) 598, 1153, 1245, 1259
RseI CAYNNNNRTG 2 cut(s) 704, 1684
SapI GCTCTTC 1 cut(s) 1825
SaqAI TTAA 9 cut(s) 453, 537, 554, 899, 986, 1011, 1064, 1142, 1661
SatI GCNGC 6 cut(s) 297, 525, 528, 618, 621, 915
Sau3AI GATC 6 cut(s) 112, 630, 1189, 1303, 1699, 1708
Sau96I GGNCC 1 cut(s) 198
ScaI AGTACT 1 cut(s) 1260
SchI GAGTC 3 cut(s) 434, 467, 632
ScrFI CCNGG 1 cut(s) 1559
SfaNI GCATC 3 cut(s) 505, 990, 1878
SfcI CTRYAG 1 cut(s) 744
SfuI TTCGAA 2 cut(s) 1231, 1847
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 2 cut(s) 704, 1684
SmlI CTYRAG 3 cut(s) 260, 892, 1251
SmoI CTYRAG 3 cut(s) 260, 892, 1251
SphI GCATGC 1 cut(s) 483
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 3 cut(s) 527, 732, 1536
SspI AATATT 2 cut(s) 780, 841
SspMI CTAG 5 cut(s) 344, 399, 585, 947, 1836
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 1557
StyI CCWWGG 1 cut(s) 1193
TaaI ACNGT 2 cut(s) 575, 1020
TaiI ACGT 1 cut(s) 1643
TaqI TCGA 6 cut(s) 1165, 1231, 1380, 1711, 1847, 1882
TatI WGTACW 2 cut(s) 1152, 1258
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 2 cut(s) 132, 1625
Tru1I TTAA 9 cut(s) 453, 537, 554, 899, 986, 1011, 1064, 1142, 1661
Tru9I TTAA 9 cut(s) 453, 537, 554, 899, 986, 1011, 1064, 1142, 1661
TscAI CASTG 2 cut(s) 469, 1635
TseFI GTSAC 1 cut(s) 1437
TseI GCWGC 5 cut(s) 296, 524, 617, 620, 914
Tsp45I GTSAC 1 cut(s) 1437
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 2 cut(s) 469, 1635
VpaK11BI GGWCC 1 cut(s) 198
VspI ATTAAT 1 cut(s) 1142
XapI RAATTY 7 cut(s) 160, 304, 406, 540, 1178, 1350, 1531
XbaI TCTAGA 1 cut(s) 584
XceI RCATGY 4 cut(s) 105, 483, 1159, 1741
XmiI GTMKAC 1 cut(s) 428
XspI CTAG 5 cut(s) 344, 399, 585, 947, 1836
ZrmI AGTACT 1 cut(s) 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.