Rh2CG435200

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000114
Physical Location & Seq
Reverse (-)
59100185 .. 59100550
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG435200.1

Sequence Viewer

Length: 366 bp
ATGTCTGCGACAGTACGTAGCGTCACTGCTTCCTATCTCACACAGAAGAAAGCTAGCGGTGTCGCAGTTGATCCAGTTACTACGGGCGCCTGTCAATATATGGTTATGGTTCCGGTATTTGAATCCGCTTCTGAGGGTCCGGACAACAATGCAACAGATATTCGGACTGCCACAGCTGGTGGCTTTGAATTGGATGTGCTAAATGATGATACTGGCCTTTGCAACAATTGCATGACATCAGGAGGAGTTTGTGGGCAAAACTCTACTAGTGCTCAATTCATTTGCTTTTGCCAGGATTCATCTTCAACAGCCACATGTTCTGAAAACTCTTCACCAACTCCAACTTCATCAGGTACAGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

121

Amino Acids

12.27

Weight (kDa)

4.05

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WAK_assoc PF14380 25 - 99 3.1e-15 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 2 cut(s) 57, 126
AclWI GGATC 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 15, 355, 361
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 3 cut(s) 122, 188, 306
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 1 cut(s) 291
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AluBI AGCT 2 cut(s) 53, 176
AluI AGCT 2 cut(s) 53, 176
Alw21I GWGCWC 1 cut(s) 274
AlwI GGATC 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 214
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 324
AsuNHI GCTAGC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 137
BanI GGYRCC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 2 cut(s) 54, 267
BfoI RGCGCY 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 3 cut(s) 88, 111, 138
BmrFI CCNGG 1 cut(s) 293
BmtI GCTAGC 1 cut(s) 57
BsaAI YACGTR 2 cut(s) 17, 363
BsaHI GRCGYC 1 cut(s) 87
BsaWI WCCGGW 2 cut(s) 112, 139
Bse1I ACTGG 2 cut(s) 74, 217
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 74, 217
BseRI GAGGAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 113, 140
BsnI GGCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 274
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 2 cut(s) 57, 126
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 124
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 3 cut(s) 88, 111, 138
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 86
BsrI ACTGG 2 cut(s) 74, 217
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 334
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 228
BstBAI YACGTR 2 cut(s) 17, 363
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 291
BstSNI TACGTA 2 cut(s) 17, 363
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 10
Csp6I GTAC 3 cut(s) 14, 354, 360
CviAII CATG 2 cut(s) 232, 315
CviJI RGCY 5 cut(s) 53, 176, 183, 216, 311
CviKI_1 RGCY 5 cut(s) 53, 176, 183, 216, 311
CviQI GTAC 3 cut(s) 14, 354, 360
DdeI CTNAG 1 cut(s) 132
DinI GGCGCC 1 cut(s) 88
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco105I TACGTA 2 cut(s) 17, 363
Eco47I GGWCC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
FaeI CATG 2 cut(s) 235, 318
FaiI YATR 5 cut(s) 99, 101, 107, 233, 316
FatI CATG 2 cut(s) 231, 314
FokI GGATG 1 cut(s) 206
FspBI CTAG 2 cut(s) 54, 267
GlaI GCGC 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 1 cut(s) 216
HapII CCGG 2 cut(s) 113, 140
HgaI GACGC 1 cut(s) 10
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 235, 318
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 2 cut(s) 122, 296
HpaII CCGG 2 cut(s) 113, 140
HphI GGTGA 1 cut(s) 324
Hpy188I TCNGA 3 cut(s) 133, 165, 322
Hpy188III TCNNGA 2 cut(s) 140, 240
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 16, 362
HpyCH4V TGCA 3 cut(s) 152, 222, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 16, 362
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 235, 318
HspAI GCGC 1 cut(s) 87
KasI GGCGCC 1 cut(s) 86
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 54, 267
MaeII ACGT 2 cut(s) 16, 362
MaeIII GTNAC 2 cut(s) 22, 76
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 58, 294, 321
MfeI CAATTG 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 3 cut(s) 188, 226, 275
Mly113I GGCGCC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 2 cut(s) 127, 236
MroI TCCGGA 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 2 cut(s) 113, 140
MspR9I CCNGG 1 cut(s) 293
MunI CAATTG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 228
NarI GGCGCC 1 cut(s) 87
NdeII GATC 1 cut(s) 70
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 235, 318
NlaIV GGNNCC 3 cut(s) 88, 111, 138
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 318
PciI ACATGT 1 cut(s) 314
PfeI GAWTC 2 cut(s) 122, 296
PluTI GGCGCC 1 cut(s) 90
Ppu21I YACGTR 2 cut(s) 17, 363
PscI ACATGT 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 88, 111, 138
PspPI GGNCC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 3 cut(s) 15, 355, 361
RsaNI GTAC 3 cut(s) 14, 354, 360
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 274
SetI ASST 6 cut(s) 19, 55, 178, 355, 361, 365
SfoI GGCGCC 1 cut(s) 88
SinI GGWCC 1 cut(s) 137
SnaBI TACGTA 2 cut(s) 17, 363
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 3 cut(s) 188, 226, 275
SsiI CCGC 2 cut(s) 57, 126
SspDI GGCGCC 1 cut(s) 86
SspMI CTAG 2 cut(s) 54, 267
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 2 cut(s) 19, 365
TasI AATT 3 cut(s) 188, 226, 275
TfiI GAWTC 2 cut(s) 122, 296
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 268, 288, 336
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 137
XceI RCATGY 1 cut(s) 318
XspI CTAG 2 cut(s) 54, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.