RLG00000020173

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
61976777 .. 61977634
858 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020173

Sequence Viewer

Length: 405 bp
ATGAAAGCCAGTAATGTCGCAGTTGTACAACAGAAGTTTTGGTTCCCGTATTTGAAACCGCTTCTGAGGCCCTGGACAAATAATACAACAGATATTAAGATTGCTATAGATGGAGGTTTTGAATTGGATGTGCTAAATGATGATACTGACCTTTGCAATAATTACGTGGCATTAGGAGGAATGAAAGCTAGTAGTGTCACAGTTGATTCAGCTATTACGGGTGAGTGTCAATATAATGTTATGGTTCCGGTGTTTGAATCCGCTTCTGAGGCTCTGGGCAACAATGCAACAGGTATTCAGACTGCCATAGATGGTGGTTTTGAATTGGATGTGCTAAATGATGATACTGGCCTATGCAAAAATTGCGTGGCATCAGGAGGAGTTTTGTGGGCAAAACTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

135

Amino Acids

14.39

Weight (kDa)

4.19

Isoelectric Point (pI)

16.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WAK_assoc PF14380 69 - 127 3e-07 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 261
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 4 cut(s) 55, 122, 257, 323
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 2 cut(s) 188, 212
AluI AGCT 2 cut(s) 188, 212
AoxI GGCC 2 cut(s) 68, 349
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 233
BccI CCATC 2 cut(s) 104, 305
BciT130I CCWGG 1 cut(s) 73
BfaI CTAG 2 cut(s) 189, 403
BfmI CTRYAG 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 2 cut(s) 44, 246
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 247
Bse1I ACTGG 2 cut(s) 9, 352
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 2 cut(s) 133, 334
BseMII CTCAG 2 cut(s) 56, 258
BseNI ACTGG 2 cut(s) 9, 352
BseRI GAGGAG 1 cut(s) 393
BshFI GGCC 2 cut(s) 70, 351
BsiSI CCGG 1 cut(s) 248
BsnI GGCC 2 cut(s) 70, 351
Bsp1407I TGTACA 1 cut(s) 25
BspACI CCGC 2 cut(s) 59, 261
BspANI GGCC 2 cut(s) 70, 351
BspCNI CTCAG 2 cut(s) 57, 259
BspLI GGNNCC 2 cut(s) 44, 246
BsrGI TGTACA 1 cut(s) 25
BsrI ACTGG 2 cut(s) 9, 352
BssECI CCNNGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 202
BstAPI GCANNNNNTGC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 65, 267
BstF5I GGATG 2 cut(s) 133, 334
BstMWI GCNNNNNNNGC 3 cut(s) 67, 269, 363
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 105
BsuRI GGCC 2 cut(s) 70, 351
BtsCI GGATG 2 cut(s) 133, 334
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 26
CviJI RGCY 6 cut(s) 8, 70, 188, 212, 272, 351
CviKI_1 RGCY 6 cut(s) 8, 70, 188, 212, 272, 351
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 2 cut(s) 65, 267
EcoO109I RGGNCCY 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 71
FaiI YATR 5 cut(s) 107, 234, 242, 308, 355
FokI GGATG 2 cut(s) 140, 341
FspBI CTAG 2 cut(s) 189, 403
HaeIII GGCC 2 cut(s) 70, 351
HapII CCGG 1 cut(s) 248
HinfI GANTC 2 cut(s) 206, 257
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 66, 268, 300
Hpy188III TCNNGA 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 156, 287, 357
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 269, 363
HpyF3I CTNAG 2 cut(s) 65, 267
HpySE526I ACGT 1 cut(s) 165
LpnPI CCDG 8 cut(s) 22, 58, 85, 260, 261, 276, 333, 360
LweI GCATC 1 cut(s) 380
MaeI CTAG 2 cut(s) 189, 403
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 196
MluCI AATT 4 cut(s) 122, 160, 323, 361
MnlI CCTC 5 cut(s) 60, 107, 170, 262, 371
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 67, 269, 363
NlaIV GGNNCC 2 cut(s) 44, 246
NmuCI GTSAC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 206, 257
Ppu21I YACGTR 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 44, 246
PspPI GGNCC 1 cut(s) 69
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 73
SetI ASST 6 cut(s) 118, 153, 168, 190, 214, 295
SfaNI GCATC 1 cut(s) 380
SfcI CTRYAG 1 cut(s) 105
Sse9I AATT 4 cut(s) 122, 160, 323, 361
SsiI CCGC 2 cut(s) 59, 261
SspMI CTAG 2 cut(s) 189, 403
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 168
TasI AATT 4 cut(s) 122, 160, 323, 361
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 2 cut(s) 206, 257
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 17, 197
XspI CTAG 2 cut(s) 189, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.