PAN-like domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 51 |
| AccI | GTMKAC | 1 cut(s) | 191 |
| AciI | CCGC | 1 cut(s) | 423 |
| AclWI | GGATC | 4 cut(s) | 74, 107, 311, 324 |
| AcoI | YGGCCR | 2 cut(s) | 40, 184 |
| AcsI | RAATTY | 2 cut(s) | 352, 382 |
| AcyI | GRCGYC | 1 cut(s) | 52 |
| AfaI | GTAC | 2 cut(s) | 123, 179 |
| AfeI | AGCGCT | 1 cut(s) | 72 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 89, 141 |
| AgsI | TTSAA | 2 cut(s) | 28, 209 |
| AjnI | CCWGG | 4 cut(s) | 7, 62, 214, 308 |
| AluBI | AGCT | 2 cut(s) | 24, 291 |
| AluI | AGCT | 2 cut(s) | 24, 291 |
| Alw26I | GTCTC | 1 cut(s) | 286 |
| AlwI | GGATC | 4 cut(s) | 74, 107, 311, 324 |
| Ama87I | CYCGRG | 1 cut(s) | 89 |
| Aor51HI | AGCGCT | 1 cut(s) | 72 |
| AoxI | GGCC | 4 cut(s) | 40, 184, 306, 389 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| ApoI | RAATTY | 2 cut(s) | 352, 382 |
| AspLEI | GCGC | 2 cut(s) | 54, 73 |
| AspS9I | GGNCC | 3 cut(s) | 306, 390, 425 |
| AsuC2I | CCSGG | 2 cut(s) | 90, 91 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 456, 461 |
| AvaI | CYCGRG | 1 cut(s) | 89 |
| AvaII | GGWCC | 1 cut(s) | 425 |
| BalI | TGGCCA | 2 cut(s) | 42, 186 |
| BamHI | GGATCC | 1 cut(s) | 316 |
| BanI | GGYRCC | 1 cut(s) | 51 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BciT130I | CCWGG | 4 cut(s) | 9, 64, 216, 310 |
| BcnI | CCSGG | 2 cut(s) | 90, 91 |
| BcoDI | GTCTC | 1 cut(s) | 286 |
| BfaI | CTAG | 2 cut(s) | 165, 357 |
| BfoI | RGCGCY | 2 cut(s) | 55, 74 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 6 cut(s) | 9, 64, 90, 91, 216, 310 |
| Bme18I | GGWCC | 1 cut(s) | 425 |
| BmeT110I | CYCGRG | 1 cut(s) | 89 |
| BmgT120I | GGNCC | 3 cut(s) | 306, 390, 425 |
| BmiI | GGNNCC | 3 cut(s) | 53, 318, 427 |
| BmrFI | CCNGG | 6 cut(s) | 9, 64, 90, 91, 216, 310 |
| BpuMI | CCSGG | 2 cut(s) | 90, 91 |
| BsaHI | GRCGYC | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 3 cut(s) | 63, 89, 321 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 89, 141 |
| Bse1I | ACTGG | 3 cut(s) | 43, 125, 187 |
| Bse3DI | GCAATG | 1 cut(s) | 418 |
| BseBI | CCWGG | 4 cut(s) | 9, 64, 216, 310 |
| BseDI | CCNNGG | 3 cut(s) | 63, 89, 321 |
| BseGI | GGATG | 1 cut(s) | 59 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 89, 141 |
| BseMI | GCAATG | 1 cut(s) | 418 |
| BseMII | CTCAG | 1 cut(s) | 306 |
| BseNI | ACTGG | 3 cut(s) | 43, 125, 187 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BshFI | GGCC | 4 cut(s) | 42, 186, 308, 391 |
| BshNI | GGYRCC | 1 cut(s) | 51 |
| BsiHKCI | CYCGRG | 1 cut(s) | 89 |
| BsiSI | CCGG | 1 cut(s) | 90 |
| BslFI | GGGAC | 1 cut(s) | 411 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 89, 141 |
| BsmAI | GTCTC | 1 cut(s) | 286 |
| BsmFI | GGGAC | 1 cut(s) | 411 |
| BsnI | GGCC | 4 cut(s) | 42, 186, 308, 391 |
| BsoBI | CYCGRG | 1 cut(s) | 89 |
| Bsp1407I | TGTACA | 1 cut(s) | 177 |
| Bsp143I | GATC | 3 cut(s) | 79, 112, 316 |
| BspACI | CCGC | 1 cut(s) | 423 |
| BspANI | GGCC | 4 cut(s) | 42, 186, 308, 391 |
| BspCNI | CTCAG | 1 cut(s) | 305 |
| BspLI | GGNNCC | 3 cut(s) | 53, 318, 427 |
| BspPI | GGATC | 4 cut(s) | 74, 107, 311, 324 |
| BspT107I | GGYRCC | 1 cut(s) | 51 |
| BsrDI | GCAATG | 1 cut(s) | 418 |
| BsrGI | TGTACA | 1 cut(s) | 177 |
| BsrI | ACTGG | 3 cut(s) | 43, 125, 187 |
| BssECI | CCNNGG | 3 cut(s) | 63, 89, 321 |
| BssMI | GATC | 3 cut(s) | 79, 112, 316 |
| BssNAI | GTATAC | 1 cut(s) | 192 |
| BssNI | GRCGYC | 1 cut(s) | 52 |
| BssT1I | CCWWGG | 1 cut(s) | 321 |
| Bst1107I | GTATAC | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 4 cut(s) | 9, 64, 216, 310 |
| Bst4CI | ACNGT | 1 cut(s) | 204 |
| BstACI | GRCGYC | 1 cut(s) | 52 |
| BstAUI | TGTACA | 1 cut(s) | 177 |
| BstC8I | GCNNGC | 1 cut(s) | 274 |
| BstDEI | CTNAG | 1 cut(s) | 292 |
| BstF5I | GGATG | 1 cut(s) | 59 |
| BstH2I | RGCGCY | 2 cut(s) | 55, 74 |
| BstHHI | GCGC | 2 cut(s) | 54, 73 |
| BstKTI | GATC | 3 cut(s) | 82, 115, 319 |
| BstMAI | GTCTC | 1 cut(s) | 286 |
| BstMBI | GATC | 3 cut(s) | 79, 112, 316 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 346 |
| BstNI | CCWGG | 4 cut(s) | 9, 64, 216, 310 |
| BstSCI | CCNGG | 6 cut(s) | 7, 62, 88, 89, 214, 308 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstX2I | RGATCY | 2 cut(s) | 112, 316 |
| BstYI | RGATCY | 2 cut(s) | 112, 316 |
| BstZ17I | GTATAC | 1 cut(s) | 192 |
| BsuRI | GGCC | 4 cut(s) | 42, 186, 308, 391 |
| BtsCI | GGATG | 1 cut(s) | 59 |
| BtsI | GCAGTG | 1 cut(s) | 283 |
| BtsIMutI | CAGTG | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 1 cut(s) | 274 |
| CfoI | GCGC | 2 cut(s) | 54, 73 |
| Cfr13I | GGNCC | 3 cut(s) | 306, 390, 425 |
| Cfr9I | CCCGGG | 1 cut(s) | 89 |
| Csp6I | GTAC | 2 cut(s) | 122, 178 |
| CviAII | CATG | 2 cut(s) | 387, 468 |
| CviJI | RGCY | 6 cut(s) | 24, 42, 186, 291, 308, 391 |
| CviKI_1 | RGCY | 6 cut(s) | 24, 42, 186, 291, 308, 391 |
| CviQI | GTAC | 2 cut(s) | 122, 178 |
| DdeI | CTNAG | 1 cut(s) | 292 |
| DinI | GGCGCC | 1 cut(s) | 53 |
| DpnI | GATC | 3 cut(s) | 81, 114, 318 |
| DpnII | GATC | 3 cut(s) | 79, 112, 316 |
| EaeI | YGGCCR | 2 cut(s) | 40, 184 |
| Eco130I | CCWWGG | 1 cut(s) | 321 |
| Eco32I | GATATC | 1 cut(s) | 400 |
| Eco47I | GGWCC | 1 cut(s) | 425 |
| Eco47III | AGCGCT | 1 cut(s) | 72 |
| Eco88I | CYCGRG | 1 cut(s) | 89 |
| EcoO109I | RGGNCCY | 1 cut(s) | 306 |
| EcoRI | GAATTC | 2 cut(s) | 352, 382 |
| EcoRII | CCWGG | 4 cut(s) | 7, 62, 214, 308 |
| EcoRV | GATATC | 1 cut(s) | 400 |
| EcoT14I | CCWWGG | 1 cut(s) | 321 |
| EgeI | GGCGCC | 1 cut(s) | 53 |
| EheI | GGCGCC | 1 cut(s) | 53 |
| ErhI | CCWWGG | 1 cut(s) | 321 |
| FaeI | CATG | 2 cut(s) | 390, 471 |
| FaiI | YATR | 7 cut(s) | 110, 162, 192, 241, 388, 414, 469 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 8, 40, 86, 118 |
| FaqI | GGGAC | 1 cut(s) | 411 |
| FatI | CATG | 2 cut(s) | 386, 467 |
| FblI | GTMKAC | 1 cut(s) | 191 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 1 cut(s) | 46 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 2 cut(s) | 165, 357 |
| GlaI | GCGC | 2 cut(s) | 53, 72 |
| GluI | GCNGC | 1 cut(s) | 69 |
| HaeII | RGCGCY | 2 cut(s) | 55, 74 |
| HaeIII | GGCC | 4 cut(s) | 42, 186, 308, 391 |
| HapII | CCGG | 1 cut(s) | 90 |
| HhaI | GCGC | 2 cut(s) | 54, 73 |
| Hin1I | GRCGYC | 1 cut(s) | 52 |
| Hin1II | CATG | 2 cut(s) | 390, 471 |
| Hin6I | GCGC | 2 cut(s) | 52, 71 |
| HinP1I | GCGC | 2 cut(s) | 52, 71 |
| HpaII | CCGG | 1 cut(s) | 90 |
| HphI | GGTGA | 3 cut(s) | 91, 456, 461 |
| Hpy166II | GTNNAC | 4 cut(s) | 99, 178, 192, 452 |
| Hpy188I | TCNGA | 1 cut(s) | 286 |
| Hpy188III | TCNNGA | 1 cut(s) | 142 |
| Hpy8I | GTNNAC | 4 cut(s) | 99, 178, 192, 452 |
| HpyAV | CCTTC | 2 cut(s) | 112, 139 |
| HpyCH4III | ACNGT | 1 cut(s) | 204 |
| HpyCH4IV | ACGT | 1 cut(s) | 365 |
| HpyCH4V | TGCA | 2 cut(s) | 276, 471 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 346 |
| HpyF3I | CTNAG | 1 cut(s) | 292 |
| HpySE526I | ACGT | 1 cut(s) | 365 |
| Hsp92I | GRCGYC | 1 cut(s) | 52 |
| Hsp92II | CATG | 2 cut(s) | 390, 471 |
| HspAI | GCGC | 2 cut(s) | 52, 71 |
| KasI | GGCGCC | 1 cut(s) | 51 |
| Kzo9I | GATC | 3 cut(s) | 79, 112, 316 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| MaeI | CTAG | 2 cut(s) | 165, 357 |
| MaeII | ACGT | 1 cut(s) | 365 |
| MalI | GATC | 3 cut(s) | 81, 114, 318 |
| MboI | GATC | 3 cut(s) | 79, 112, 316 |
| MflI | RGATCY | 2 cut(s) | 112, 316 |
| MlsI | TGGCCA | 2 cut(s) | 42, 186 |
| MluCI | AATT | 2 cut(s) | 352, 382 |
| MluNI | TGGCCA | 2 cut(s) | 42, 186 |
| Mly113I | GGCGCC | 1 cut(s) | 52 |
| MmeI | TCCRAC | 2 cut(s) | 294, 351 |
| MnlI | CCTC | 3 cut(s) | 253, 297, 440 |
| Mox20I | TGGCCA | 2 cut(s) | 42, 186 |
| MscI | TGGCCA | 2 cut(s) | 42, 186 |
| MseI | TTAA | 2 cut(s) | 15, 333 |
| MslI | CAYNNNNRTG | 1 cut(s) | 466 |
| Msp20I | TGGCCA | 2 cut(s) | 42, 186 |
| MspI | CCGG | 1 cut(s) | 90 |
| MspR9I | CCNGG | 6 cut(s) | 9, 64, 90, 91, 216, 310 |
| MvaI | CCWGG | 4 cut(s) | 9, 64, 216, 310 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 346 |
| NarI | GGCGCC | 1 cut(s) | 52 |
| NciI | CCSGG | 2 cut(s) | 90, 91 |
| NdeII | GATC | 3 cut(s) | 79, 112, 316 |
| NlaIII | CATG | 2 cut(s) | 390, 471 |
| NlaIV | GGNNCC | 3 cut(s) | 53, 318, 427 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PluTI | GGCGCC | 1 cut(s) | 55 |
| Psp6I | CCWGG | 4 cut(s) | 7, 62, 214, 308 |
| PspGI | CCWGG | 4 cut(s) | 7, 62, 214, 308 |
| PspN4I | GGNNCC | 3 cut(s) | 53, 318, 427 |
| PspPI | GGNCC | 3 cut(s) | 306, 390, 425 |
| PsuI | RGATCY | 2 cut(s) | 112, 316 |
| RsaI | GTAC | 2 cut(s) | 123, 179 |
| RsaNI | GTAC | 2 cut(s) | 122, 178 |
| RseI | CAYNNNNRTG | 1 cut(s) | 466 |
| SaqAI | TTAA | 2 cut(s) | 15, 333 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 3 cut(s) | 79, 112, 316 |
| Sau96I | GGNCC | 3 cut(s) | 306, 390, 425 |
| ScrFI | CCNGG | 6 cut(s) | 9, 64, 90, 91, 216, 310 |
| SetI | ASST | 7 cut(s) | 26, 104, 220, 264, 293, 368, 451 |
| SfoI | GGCGCC | 1 cut(s) | 53 |
| SinI | GGWCC | 1 cut(s) | 425 |
| SmaI | CCCGGG | 1 cut(s) | 91 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 466 |
| Sse9I | AATT | 2 cut(s) | 352, 382 |
| SsiI | CCGC | 1 cut(s) | 423 |
| SspDI | GGCGCC | 1 cut(s) | 51 |
| SspMI | CTAG | 2 cut(s) | 165, 357 |
| StyD4I | CCNGG | 6 cut(s) | 7, 62, 88, 89, 214, 308 |
| StyI | CCWWGG | 1 cut(s) | 321 |
| TaaI | ACNGT | 1 cut(s) | 204 |
| TaiI | ACGT | 1 cut(s) | 368 |
| TasI | AATT | 2 cut(s) | 352, 382 |
| TatI | WGTACW | 1 cut(s) | 177 |
| Tru1I | TTAA | 2 cut(s) | 15, 333 |
| Tru9I | TTAA | 2 cut(s) | 15, 333 |
| TscAI | CASTG | 1 cut(s) | 283 |
| TseI | GCWGC | 1 cut(s) | 68 |
| TspDTI | ATGAA | 2 cut(s) | 228, 375 |
| TspGWI | ACGGA | 1 cut(s) | 147 |
| TspMI | CCCGGG | 1 cut(s) | 89 |
| TspRI | CASTG | 1 cut(s) | 283 |
| VpaK11BI | GGWCC | 1 cut(s) | 425 |
| XapI | RAATTY | 2 cut(s) | 352, 382 |
| XmaI | CCCGGG | 1 cut(s) | 89 |
| XmiI | GTMKAC | 1 cut(s) | 191 |
| XspI | CTAG | 2 cut(s) | 165, 357 |