Rmu_sc0004178.1_g000002

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004178.1
OG0000114
Physical Location & Seq
Forward (+)
6732 .. 8642
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004178.1_g000002.1.cds

Sequence Viewer

Length: 1068 bp
atggagattgaagtactgattaatgcaatgacctgcaatctggaatatcaagctgggctatatctttcttggttatcagatctgtgggcggatgaaaatggaagaactttacacattagactagcagcttctgattataagaatctaaaaagtaatgggattttgcctgaaaatcaagaagtagccataaaaaggctatcaaagaagtccggacaaggacaacaggagttcatgaatgagttaaagcttatagcgaagctccaacataccaaccttgttagactcttgggttgctgcactgaagcagaggaaatggtgttgatttatgagtacatgcccaatcgaagtttggacaaatttctgtttgatccatccgaaaagacaaaattggactgggataggcgtttaagaattatagaaggtacagctcaaggattgctttatatacacaagtactcaagattaaaaatcattcacagggatctaaaagcaagtaatattctattggatggaacaatgaaccccaagatttctgactttggaatggcaaagatttttgacataaatcaaactgaagcaaatacaaacagggttgttgggacctacggctacatgtcacctgagtatgcacgttatggtaatttctctgagaaatcggatgtctttagttttggagttttgttgttggagattgtaagtggaaagaaaaatgctagtttctatcgttttgaacgttcactgactctcgctggatgggcatgggacctatggaaagaaggaaggggaatagaggtgattgatgcgtcaataagggaaacattacaggctcatgaggctttaaggtgtatcaatataggacttttgtgcgttcaagaatctgcagctgatcgacctgcaatggcatcagtaattcacatgttgcagggaaatgaagctgcctctcttccacctaccaaagcacctgccttttcaacgcagacgaatttcagtactattggtccttcttctcaaacacctaccaattattcaaacaatgcactcacgattagtttgccagaagctcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

355

Amino Acids

40.02

Weight (kDa)

6.35

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AarI CACCTGC 1 cut(s) 970
Acc36I ACCTGC 3 cut(s) 41, 901, 970
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 1 cut(s) 89
AclI AACGTT 1 cut(s) 733
AclWI GGATC 2 cut(s) 362, 489
AcsI RAATTY 2 cut(s) 356, 982
AcuI CTGAAG 2 cut(s) 321, 594
AfaI GTAC 5 cut(s) 15, 332, 424, 455, 991
AfiI CCNNNNNNNGG 1 cut(s) 192
AflIII ACRYGT 2 cut(s) 612, 915
AgsI TTSAA 5 cut(s) 11, 731, 872, 972, 1029
AluBI AGCT 8 cut(s) 53, 128, 247, 259, 428, 884, 935, 1061
AluI AGCT 8 cut(s) 53, 128, 247, 259, 428, 884, 935, 1061
AlwI GGATC 2 cut(s) 362, 489
AlwNI CAGNNNCTG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 209
ApeKI GCWGC 4 cut(s) 125, 294, 881, 935
ApoI RAATTY 2 cut(s) 356, 982
AseI ATTAAT 1 cut(s) 21
AspS9I GGNCC 3 cut(s) 600, 763, 998
AsuHPI GGTGA 2 cut(s) 609, 805
AvaII GGWCC 3 cut(s) 600, 763, 998
BbvI GCAGC 4 cut(s) 137, 281, 893, 922
BccI CCATC 3 cut(s) 379, 503, 747
BceAI ACGGC 1 cut(s) 622
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BfaI CTAG 2 cut(s) 122, 714
BfmI CTRYAG 1 cut(s) 879
BfuAI ACCTGC 3 cut(s) 41, 901, 970
BglII AGATCT 1 cut(s) 79
BisI GCNGC 4 cut(s) 126, 295, 882, 936
BlsI GCNGC 4 cut(s) 127, 296, 883, 937
BmcAI AGTACT 3 cut(s) 15, 455, 991
Bme18I GGWCC 3 cut(s) 600, 763, 998
BmgT120I GGNCC 3 cut(s) 600, 763, 998
BmiI GGNNCC 2 cut(s) 601, 764
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 2 cut(s) 790, 911
BmuI ACTGGG 1 cut(s) 403
BpuEI CTTGAG 2 cut(s) 414, 442
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 2 cut(s) 33, 903
BseAI TCCGGA 1 cut(s) 209
BseGI GGATG 5 cut(s) 97, 371, 514, 664, 758
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 2 cut(s) 33, 903
BseMII CTCAG 2 cut(s) 612, 639
BseNI ACTGG 1 cut(s) 398
BseXI GCAGC 4 cut(s) 137, 281, 893, 922
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 280
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 2 cut(s) 613, 776
BslI CCNNNNNNNGG 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 613, 776
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 4 cut(s) 79, 367, 481, 886
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 613, 640
BspEI TCCGGA 1 cut(s) 209
BspHI TCATGA 2 cut(s) 231, 829
BspLI GGNNCC 2 cut(s) 601, 764
BspMAI CTGCAG 1 cut(s) 883
BspMI ACCTGC 3 cut(s) 41, 901, 970
BspPI GGATC 2 cut(s) 362, 489
BsrDI GCAATG 2 cut(s) 33, 903
BsrI ACTGG 1 cut(s) 398
BssMI GATC 4 cut(s) 79, 367, 481, 886
Bst6I CTCTTC 1 cut(s) 948
BstDEI CTNAG 2 cut(s) 621, 648
BstF5I GGATG 5 cut(s) 97, 371, 514, 664, 758
BstKTI GATC 4 cut(s) 82, 370, 484, 889
BstMBI GATC 4 cut(s) 79, 367, 481, 886
BstMWI GCNNNNNNNGC 2 cut(s) 755, 833
BstNSI RCATGY 3 cut(s) 337, 616, 919
BstSFI CTRYAG 1 cut(s) 879
BstV1I GCAGC 4 cut(s) 137, 281, 893, 922
BstX2I RGATCY 2 cut(s) 79, 481
BstYI RGATCY 2 cut(s) 79, 481
BtsCI GGATG 5 cut(s) 97, 371, 514, 664, 758
BtsIMutI CAGTG 2 cut(s) 297, 737
BveI ACCTGC 3 cut(s) 41, 901, 970
CaiI CAGNNNCTG 1 cut(s) 131
CciI TCATGA 2 cut(s) 231, 829
Cfr13I GGNCC 3 cut(s) 600, 763, 998
CseI GACGC 1 cut(s) 792
Csp6I GTAC 5 cut(s) 14, 331, 423, 454, 990
CviAII CATG 6 cut(s) 232, 334, 613, 759, 830, 916
CviQI GTAC 5 cut(s) 14, 331, 423, 454, 990
DdeI CTNAG 2 cut(s) 621, 648
DpnI GATC 4 cut(s) 81, 369, 483, 888
DpnII GATC 4 cut(s) 79, 367, 481, 886
Eam1104I CTCTTC 1 cut(s) 948
EarI CTCTTC 1 cut(s) 948
EciI GGCGGA 1 cut(s) 104
Eco47I GGWCC 3 cut(s) 600, 763, 998
Eco57I CTGAAG 2 cut(s) 321, 594
EcoO109I RGGNCCY 2 cut(s) 600, 763
FaeI CATG 6 cut(s) 235, 337, 616, 762, 833, 919
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 2 cut(s) 613, 776
FatI CATG 6 cut(s) 231, 333, 612, 758, 829, 915
Fnu4HI GCNGC 4 cut(s) 126, 295, 882, 936
FokI GGATG 5 cut(s) 104, 358, 521, 671, 765
Fsp4HI GCNGC 4 cut(s) 126, 295, 882, 936
FspBI CTAG 2 cut(s) 122, 714
GluI GCNGC 4 cut(s) 126, 295, 882, 936
GsaI CCCAGC 1 cut(s) 57
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 792
Hin1II CATG 6 cut(s) 235, 337, 616, 762, 833, 919
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 4 cut(s) 142, 282, 742, 875
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 609, 805
Hpy166II GTNNAC 1 cut(s) 737
Hpy188I TCNGA 6 cut(s) 79, 133, 376, 535, 649, 658
Hpy188III TCNNGA 8 cut(s) 41, 176, 210, 232, 459, 830, 872, 1042
Hpy8I GTNNAC 1 cut(s) 737
HpyAV CCTTC 4 cut(s) 413, 770, 774, 1011
HpyCH4IV ACGT 2 cut(s) 631, 733
HpyCH4V TGCA 8 cut(s) 26, 36, 297, 629, 881, 896, 922, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 755, 833
HpyF3I CTNAG 2 cut(s) 621, 648
HpySE526I ACGT 2 cut(s) 631, 733
Hsp92II CATG 6 cut(s) 235, 337, 616, 762, 833, 919
Kpn2I TCCGGA 1 cut(s) 209
Kzo9I GATC 4 cut(s) 79, 367, 481, 886
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 4 cut(s) 137, 281, 893, 922
LweI GCATC 2 cut(s) 790, 911
MaeI CTAG 2 cut(s) 122, 714
MaeII ACGT 2 cut(s) 631, 733
MaeIII GTNAC 1 cut(s) 615
MalI GATC 4 cut(s) 81, 369, 483, 888
MboI GATC 4 cut(s) 79, 367, 481, 886
MboII GAAGA 3 cut(s) 114, 935, 996
MflI RGATCY 2 cut(s) 79, 481
MluCI AATT 7 cut(s) 356, 386, 411, 640, 909, 982, 1021
MlyI GAGTC 2 cut(s) 276, 736
MmeI TCCRAC 2 cut(s) 286, 666
MnlI CCTC 4 cut(s) 301, 784, 826, 949
MroI TCCGGA 1 cut(s) 209
MseI TTAA 5 cut(s) 21, 242, 407, 464, 839
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 755, 833
NdeII GATC 4 cut(s) 79, 367, 481, 886
NlaIII CATG 6 cut(s) 235, 337, 616, 762, 833, 919
NlaIV GGNNCC 2 cut(s) 601, 764
NmuCI GTSAC 1 cut(s) 615
NspI RCATGY 3 cut(s) 337, 616, 919
PagI TCATGA 2 cut(s) 231, 829
PaqCI CACCTGC 1 cut(s) 970
PciI ACATGT 2 cut(s) 612, 915
PcsI WCGNNNNNNNCGW 1 cut(s) 730
PfeI GAWTC 2 cut(s) 142, 875
PkrI GCNGC 4 cut(s) 127, 296, 883, 937
PleI GAGTC 2 cut(s) 276, 736
PpsI GAGTC 2 cut(s) 276, 736
PpuMI RGGWCCY 2 cut(s) 600, 763
PscI ACATGT 2 cut(s) 612, 915
PshBI ATTAAT 1 cut(s) 21
PsiI TTATAA 1 cut(s) 138
Psp1406I AACGTT 1 cut(s) 733
Psp5II RGGWCCY 2 cut(s) 600, 763
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 601, 764
PspPI GGNCC 3 cut(s) 600, 763, 998
PspPPI RGGWCCY 2 cut(s) 600, 763
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 2 cut(s) 79, 481
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 5 cut(s) 15, 332, 424, 455, 991
RsaNI GTAC 5 cut(s) 14, 331, 423, 454, 990
SaqAI TTAA 5 cut(s) 21, 242, 407, 464, 839
SatI GCNGC 4 cut(s) 126, 295, 882, 936
Sau3AI GATC 4 cut(s) 79, 367, 481, 886
Sau96I GGNCC 3 cut(s) 600, 763, 998
ScaI AGTACT 3 cut(s) 15, 455, 991
SchI GAGTC 2 cut(s) 276, 736
SfaNI GCATC 2 cut(s) 790, 911
SfcI CTRYAG 1 cut(s) 879
SinI GGWCC 3 cut(s) 600, 763, 998
SmlI CTYRAG 2 cut(s) 429, 457
SmoI CTYRAG 2 cut(s) 429, 457
Sse9I AATT 7 cut(s) 356, 386, 411, 640, 909, 982, 1021
SsiI CCGC 1 cut(s) 89
SspI AATATT 1 cut(s) 499
SspMI CTAG 2 cut(s) 122, 714
TaiI ACGT 2 cut(s) 634, 736
TaqI TCGA 3 cut(s) 343, 889, 1063
TasI AATT 7 cut(s) 356, 386, 411, 640, 909, 982, 1021
TatI WGTACW 4 cut(s) 13, 330, 453, 989
TfiI GAWTC 2 cut(s) 142, 875
Tru1I TTAA 5 cut(s) 21, 242, 407, 464, 839
Tru9I TTAA 5 cut(s) 21, 242, 407, 464, 839
TscAI CASTG 2 cut(s) 304, 744
TseFI GTSAC 1 cut(s) 615
TseI GCWGC 4 cut(s) 125, 294, 881, 935
Tsp45I GTSAC 1 cut(s) 615
TspDTI ATGAA 5 cut(s) 108, 220, 248, 533, 945
TspRI CASTG 2 cut(s) 304, 744
VpaK11BI GGWCC 3 cut(s) 600, 763, 998
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 2 cut(s) 356, 982
XceI RCATGY 3 cut(s) 337, 616, 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XspI CTAG 2 cut(s) 122, 714
ZrmI AGTACT 3 cut(s) 15, 455, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.