Rh2AG588000

receptor-like protein kinase At1g67000

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
81955584 .. 81956372
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG588000.1

Sequence Viewer

Length: 789 bp
ATGATGAACTCCCTTGTGCTTCAATCTTTGATTCCTTTCCTCGTGATCACTTCCTTTTTCTCAATCAATCTTCCATTCACTCTGTGTGCCGATGATCCTCAATATGCCTACTGCAACCAGGCCATCAACTGTGGCCCTAACATCTCGTACCCCTTTTGGGGAGTGAATCGACCTAACTATTGTGGCCAGCCCGGGTTCGAAATCGAATGCCAAGACAATGTCCCAGTGATCAACATGAGAAATATCAACTTCAGAATTCTTGAGACGAACTCTAGTAGTACAGATCGGGTTGTTAAACTTACTAGGAACGATTATTGGAAAACTATCTGCCCCATTTCTTATGTTAACACCAGCATCGACTTTTCTCTGTTCAATTATGGTTCTGGGCTTCAGAACATGTCTTTTTACTACGGATGTAATACTACAGATCCTACAGGGTTAAATGTTTCCCTTGTTTGCAACAGTAGTGTCACTGTTTCCTATCTCACACAATCACAAACTAGTGGACTCCCGTTTAGTCCAGTTTCTTCTGGGGCATGCGAAAGTGAGGTTCTGGTTCCGGTTTCCGAAACGGCTGTTTTGGCTCTCGATAACAATCAAACGACGATCCAAGAAGCCATCGATGGGGGTTTCGTACTGGGATTGAAGATTGATAATAGTGCATGCAACAATTGTGAGGCATCAGGAGGAAAGTGTGGGATGAACACTACTGATGGTGACTTTATGTGCTTTTGCCAAGATCAGCCCTATGCTGCAACCACATGTGGAAGTCGTAAAACAGGTATATAG

Protein Analysis

262

Amino Acids

28.52

Weight (kDa)

4.26

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 38 - 94 3.9e-14 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 163 - 248 3.5e-17 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 89, 422, 601
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 235, 374
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 3 cut(s) 149, 280, 636
AfiI CCNNNNNNNGG 3 cut(s) 157, 158, 624
AflIII ACRYGT 2 cut(s) 396, 761
AgsI TTSAA 3 cut(s) 23, 373, 646
AhlI ACTAGT 1 cut(s) 500
AjnI CCWGG 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 3 cut(s) 89, 422, 601
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 120, 133, 184
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 2 cut(s) 192, 193
AsuHPI GGTGA 1 cut(s) 728
AsuII TTCGAA 1 cut(s) 198
AvaI CYCGRG 1 cut(s) 191
BalI TGGCCA 1 cut(s) 186
BauI CACGAG 1 cut(s) 41
BbvI GCAGC 1 cut(s) 739
BccI CCATC 4 cut(s) 131, 617, 626, 707
BceAI ACGGC 1 cut(s) 588
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 2 cut(s) 45, 228
BcnI CCSGG 2 cut(s) 192, 193
BcoDI GTCTC 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 3 cut(s) 273, 303, 501
BfmI CTRYAG 2 cut(s) 423, 432
BisI GCNGC 1 cut(s) 753
BlsI GCNGC 1 cut(s) 754
Bme1390I CCNGG 3 cut(s) 119, 192, 193
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 3 cut(s) 119, 192, 193
BmrI ACTGGG 2 cut(s) 218, 647
BmsI GCATC 2 cut(s) 363, 689
BmuI ACTGGG 2 cut(s) 218, 647
BplI GAGNNNNNCTC 2 cut(s) 254, 286
Bpu14I TTCGAA 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 2 cut(s) 192, 193
Bsa29I ATCGAT 1 cut(s) 621
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 559
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 158, 624
Bse1I ACTGG 3 cut(s) 224, 521, 642
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 419, 705
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 3 cut(s) 157, 158, 624
BseNI ACTGG 3 cut(s) 224, 521, 642
BseXI GCAGC 1 cut(s) 739
BshFI GGCC 3 cut(s) 122, 135, 186
BshVI ATCGAT 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 2 cut(s) 192, 560
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 157, 158, 624
BsmAI GTCTC 1 cut(s) 257
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 122, 135, 186
BsoBI CYCGRG 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 198
Bsp143I GATC 7 cut(s) 45, 94, 228, 283, 427, 606, 739
BspANI GGCC 3 cut(s) 122, 135, 186
BspDI ATCGAT 1 cut(s) 621
BspLI GGNNCC 1 cut(s) 558
BspPI GGATC 3 cut(s) 89, 422, 601
BspT104I TTCGAA 1 cut(s) 198
BsrI ACTGG 3 cut(s) 224, 521, 642
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 7 cut(s) 45, 94, 228, 283, 427, 606, 739
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 131, 464, 475
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 188, 538, 664
BstF5I GGATG 2 cut(s) 419, 705
BstKTI GATC 7 cut(s) 48, 97, 231, 286, 430, 609, 742
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 7 cut(s) 45, 94, 228, 283, 427, 606, 739
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 4 cut(s) 400, 540, 666, 765
BstSCI CCNGG 3 cut(s) 117, 190, 191
BstSFI CTRYAG 2 cut(s) 423, 432
BstV1I GCAGC 1 cut(s) 739
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 621
BsuRI GGCC 3 cut(s) 122, 135, 186
BsuTUI ATCGAT 1 cut(s) 621
BtsCI GGATG 2 cut(s) 419, 705
BtsIMutI CAGTG 2 cut(s) 231, 471
Cac8I GCNNGC 3 cut(s) 188, 538, 664
Cfr13I GGNCC 1 cut(s) 134
Cfr9I CCCGGG 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 621
Csp6I GTAC 3 cut(s) 148, 279, 635
CviAII CATG 5 cut(s) 235, 397, 537, 663, 762
CviJI RGCY 9 cut(s) 122, 135, 186, 190, 388, 575, 584, 617, 745
CviKI_1 RGCY 9 cut(s) 122, 135, 186, 190, 388, 575, 584, 617, 745
CviQI GTAC 3 cut(s) 148, 279, 635
DpnI GATC 7 cut(s) 47, 96, 230, 285, 429, 608, 741
DpnII GATC 7 cut(s) 45, 94, 228, 283, 427, 606, 739
DraIII CACNNNGTG 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 184
Eco57I CTGAAG 2 cut(s) 235, 374
Eco88I CYCGRG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 5 cut(s) 238, 400, 540, 666, 765
FaqI GGGAC 1 cut(s) 206
FatI CATG 5 cut(s) 234, 396, 536, 662, 761
FbaI TGATCA 2 cut(s) 45, 228
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 2 cut(s) 426, 712
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 3 cut(s) 273, 303, 501
GluI GCNGC 1 cut(s) 753
HaeIII GGCC 3 cut(s) 122, 135, 186
HapII CCGG 2 cut(s) 192, 560
Hin1II CATG 5 cut(s) 238, 400, 540, 666, 765
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 3 cut(s) 31, 166, 507
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 2 cut(s) 192, 560
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 2 cut(s) 346, 506
Hpy188I TCNGA 3 cut(s) 254, 393, 568
Hpy188III TCNNGA 4 cut(s) 43, 260, 587, 684
Hpy8I GTNNAC 2 cut(s) 346, 506
Hpy99I CGWCG 1 cut(s) 607
HpyCH4III ACNGT 3 cut(s) 131, 464, 475
HpyCH4V TGCA 5 cut(s) 114, 459, 662, 666, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
Hsp92II CATG 5 cut(s) 238, 400, 540, 666, 765
Ksp22I TGATCA 2 cut(s) 45, 228
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 7 cut(s) 45, 94, 228, 283, 427, 606, 739
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 2 cut(s) 363, 689
MaeI CTAG 3 cut(s) 273, 303, 501
MaeIII GTNAC 2 cut(s) 469, 716
MalI GATC 7 cut(s) 47, 96, 230, 285, 429, 608, 741
MboI GATC 7 cut(s) 45, 94, 228, 283, 427, 606, 739
MboII GAAGA 3 cut(s) 62, 519, 658
MfeI CAATTG 1 cut(s) 670
MflI RGATCY 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 3 cut(s) 255, 373, 670
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 1 cut(s) 501
MnlI CCTC 5 cut(s) 50, 108, 541, 670, 680
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 3 cut(s) 294, 345, 440
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 2 cut(s) 192, 560
MspR9I CCNGG 3 cut(s) 119, 192, 193
MunI CAATTG 1 cut(s) 670
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 2 cut(s) 192, 193
NdeII GATC 7 cut(s) 45, 94, 228, 283, 427, 606, 739
NlaIII CATG 5 cut(s) 238, 400, 540, 666, 765
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 2 cut(s) 469, 716
NspI RCATGY 4 cut(s) 400, 540, 666, 765
NspV TTCGAA 1 cut(s) 198
PaeI GCATGC 2 cut(s) 540, 666
PciI ACATGT 2 cut(s) 396, 761
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 31, 166
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 754
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PscI ACATGT 2 cut(s) 396, 761
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 427
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 3 cut(s) 149, 280, 636
RsaNI GTAC 3 cut(s) 148, 279, 635
SaqAI TTAA 3 cut(s) 294, 345, 440
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 7 cut(s) 45, 94, 228, 283, 427, 606, 739
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 501
ScrFI CCNGG 3 cut(s) 119, 192, 193
SetI ASST 3 cut(s) 175, 552, 784
SfaNI GCATC 2 cut(s) 363, 689
SfcI CTRYAG 2 cut(s) 423, 432
SfuI TTCGAA 1 cut(s) 198
SmaI CCCGGG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 500
SphI GCATGC 2 cut(s) 540, 666
Sse9I AATT 3 cut(s) 255, 373, 670
SspMI CTAG 3 cut(s) 273, 303, 501
StyD4I CCNGG 3 cut(s) 117, 190, 191
TaaI ACNGT 3 cut(s) 131, 464, 475
TaqI TCGA 6 cut(s) 169, 198, 204, 357, 588, 621
TasI AATT 3 cut(s) 255, 373, 670
TatI WGTACW 1 cut(s) 278
TfiI GAWTC 2 cut(s) 31, 166
Tru1I TTAA 3 cut(s) 294, 345, 440
Tru9I TTAA 3 cut(s) 294, 345, 440
TscAI CASTG 2 cut(s) 231, 478
TseFI GTSAC 2 cut(s) 469, 716
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 2 cut(s) 469, 716
TspDTI ATGAA 2 cut(s) 20, 716
TspGWI ACGGA 1 cut(s) 426
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 2 cut(s) 231, 478
Tth111I GACNNNGTC 1 cut(s) 218
XapI RAATTY 1 cut(s) 255
XceI RCATGY 4 cut(s) 400, 540, 666, 765
XmaI CCCGGG 1 cut(s) 191
XspI CTAG 3 cut(s) 273, 303, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.