FvH4_6g44107

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000114
Physical Location & Seq
Reverse (-)
34026629 .. 34030687
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44107.t2

Sequence Viewer

Length: 2442 bp
ATGGGGTGGCTCTTGTGTTACCTAGTAACGCTTCTCGTATCTCATATCCTTTCCTTATGTACGTGCCAAGACAAATTAGTACCAGGACAGAATATCACTGGGAACAACACTTTGGTTTCTTCCCCTGGTACGTTTTCCTTAGGCTTCTTCAATCCTGAGAATTCTACCAAATACTTTCTTGGTATACGATTCAACACATTCCCAAATACTGCATTAGTATGGATTGCTAACAGAGAATCTCCGCTTGATGCTCCGGGTTTGTTTATGCTCAGCAGCGATGGAAACCTTGTAGTGTTGGATGATACTAGAAACCTTGTCTGGTCAACTAGTGCTTCAATACCTGCTTCTGCAATGAATCACACAACTGGACTACTAGAGGATTCCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACCCTTTGGCAGAGCTTCGATCATCCCTCTGATACTTTGTTGCCCGGCATGAAGATTAGCTTGAACAAGACGTCTGGCCAACAAAGGCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAGTTCACAGCAGGCATTGATCCACAAGTACCATTTCAGGCCATTATATGGAAGGAAACTTCTCGGTATTATAGAAGTTTGATGCCGGGCAAGGATACAAAAACAGAGTTTCAGAATCAAGGTGGATCCTTGTCTTACATATCTTACAACTTTGATGTTGATGAGGTTTATGTTTTTGTAAGTATCTCGGATAGTTCAGTAAAAATGAGGGTCTGGTTGAGTCCAACAGGGCAATATCAACAGCTGCTGTGGCATGATTCTAGTAAATCGTGGTTGAAACTGTTGAATGCACCTAGTGATAACTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGGGAATCCTTGTCTTCATCACCATGCAAGTGTTTGACTGGTTTTAAAGCCAAGTTTCCGAACCAATCGGCGGTGGGGGATTGGTCCGGTGGCTGTGTAAGGGAAAATGTGTTGACATGTGGTAACGGCCTAAAAGGCAATTTTTCAAAGCTTGAAATGGTGAAACTGCCGGATTATTCTGTTTGGTTAAACAATAGGAGTATGAGCGAGTGTGAATCTGAATGTCGGCAGAACTGTTCTTGCACAGCTTATGCTTATGTTAATGGGACAGATGGAAATACAGGGACTTGTTTGACATGGTTTGGCGAATTACTGGATCTAGTAGAGAATAAAACTACATATGATATTTATATTCGTGTTCCTGGCTCCGAACTAGGCACCAAGGGTCTTTCTGTTAATTCCTTGAAGCGGACCATTGTAATTGCAATAGTCTCTACAGCAGTTGGATTGCTTACAATAACTTTTGGCTATTTCTTATGGAAGAAAAAATTGGGGAGGATAGCCAGAAGAGTGAGTGCGAATATAAGTAAGGTCAGTGCAGGAGGCGGGAAGAATGATACAGAACTACCACTCTTCTGTTTACGGAGCATATTAGCTGCTACAAACAACTTCTCTGAAGACAATAAACTTGGAGAGGGAGGATTCGGCCCTGTTTATAAGGGAATTTTGCCGGAAAATCAAGAAGTGGCCATAAAGAGGCTATCAAAGAAGTCTGGGCAAGGACATCATGAGTTCATGAATGAGTTGAAACTTATAGCCAAACTCCAGCACACCAACCTTGCTCGTCTCTTGGGTTGCTGTATGGAAGAAGATGAACTCATATTGATCTACGAGTACATGCCTAATCGAAGTCTGGACAAATTTTTGTTTGATCCTTCTGAAAAGACAAAGTTGGACTGGGGTATACGCTATCGAATTATACATGGTGTTGCTCAAGGAGTACTATATATCCACAAATACTCTAGATTGAAAATTATCCATAGAGATCTAAAAGCAAGTAATGTGCTATTGGATGGAGCAATGAATCCCAAAGTGTCTGACTTTGGAATGGCGAGGATATTTGATATAAATCAAACTGAAGCAAATACCAACAAGGTTGTTGGGACATACGGCTACATGTCACCTGAATATGCACTATATGGTCATTTTTCTGAGAAATTGGATGTGTTTAGTTTTGGAGTGCTATTGTTAGAGATTGTAAGTGGAAAGAAGAATGCTTTGTTTTATTCTTGCGAAATTTCACTAACGCTAGCTCAATGGATATGGCAATTATGGAAAGAAGGTAGAGAGATGGAAGTAATTGACGCATCAGTAAGGGAAACTTGCCGGATTCATGAAGCTTTGAGATGCATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGACCAACAATGTCATCGGTAATTCATATGCTAGAGGTCGATGAAGCTACATCACTTCCACCCTCAAAAGAACCTGCTTTTTCAACAAGTAGGATTTCAAGTCCTGTTACCACATATTCCAAAAATGTCGTCACTATTACTTTGCCAGAACCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

814

Amino Acids

90.46

Weight (kDa)

6.93

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 25 - 105 5.2e-23 D-mannose binding lectin
S_locus_glycop PF00954 159 - 248 3.6e-18 S-locus glycoprotein domain
PAN_2 PF08276 276 - 337 5.4e-15 PAN-like domain
Pkinase PF00069 435 - 644 4.7e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 437 - 683 1.3e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1548
AatII GACGTC 1 cut(s) 488
Acc36I ACCTGC 2 cut(s) 349, 2365
AccB1I GGYRCC 2 cut(s) 501, 1268
AccB7I CCANNNNNTGG 1 cut(s) 591
AccI GTMKAC 2 cut(s) 184, 1795
AccIII TCCGGA 1 cut(s) 383
AciI CCGC 5 cut(s) 242, 867, 962, 1300, 1437
AclWI GGATC 6 cut(s) 524, 557, 663, 676, 1215, 1757
AcoI YGGCCR 2 cut(s) 490, 1578
AcsI RAATTY 4 cut(s) 160, 1554, 1751, 2127
AcuI CTGAAG 2 cut(s) 1527, 1989
AcyI GRCGYC 2 cut(s) 485, 502
AdeI CACNNNGTG 1 cut(s) 839
AfaI GTAC 6 cut(s) 61, 81, 130, 573, 1727, 1833
AfeI AGCGCT 1 cut(s) 522
AfiI CCNNNNNNNGG 5 cut(s) 539, 591, 961, 1299, 1587
AflIII ACRYGT 2 cut(s) 1007, 2007
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 4 cut(s) 82, 124, 512, 1252
AjuI GAANNNNNNNTTGG 4 cut(s) 95, 127, 1364, 1396
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
Alw26I GTCTC 2 cut(s) 1327, 1682
AlwI GGATC 6 cut(s) 524, 557, 663, 676, 1215, 1757
AlwNI CAGNNNCTG 1 cut(s) 790
Aor13HI TCCGGA 1 cut(s) 383
Aor51HI AGCGCT 1 cut(s) 522
AoxI GGCC 5 cut(s) 490, 582, 1018, 1537, 1578
ApeKI GCWGC 4 cut(s) 273, 518, 787, 1487
ApoI RAATTY 4 cut(s) 160, 1554, 1751, 2127
ArsI GACNNNNNNTTYG 2 cut(s) 2397, 2429
AspLEI GCGC 2 cut(s) 504, 523
AspS9I GGNCC 4 cut(s) 869, 975, 1302, 1538
AsuC2I CCSGG 4 cut(s) 255, 459, 540, 630
AsuHPI GGTGA 4 cut(s) 406, 903, 1063, 2004
AsuNHI GCTAGC 1 cut(s) 2140
AvaII GGWCC 3 cut(s) 869, 975, 1302
AxyI CCTNAGG 1 cut(s) 139
BalI TGGCCA 2 cut(s) 492, 1580
BamHI GGATCC 1 cut(s) 668
BanI GGYRCC 2 cut(s) 501, 1268
BbsI GAAGAC 2 cut(s) 897, 1515
BbvI GCAGC 4 cut(s) 285, 530, 774, 1474
BccI CCATC 4 cut(s) 272, 1157, 1898, 2176
BceAI ACGGC 2 cut(s) 1033, 2017
BcgI CGANNNNNNTGC 2 cut(s) 2230, 2264
BciT130I CCWGG 4 cut(s) 84, 126, 514, 1254
BciVI GTATCC 1 cut(s) 631
BcnI CCSGG 4 cut(s) 255, 459, 540, 630
BcoDI GTCTC 2 cut(s) 1327, 1682
BcuI ACTAGT 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 1326
BfoI RGCGCY 2 cut(s) 505, 524
BfuAI ACCTGC 2 cut(s) 349, 2365
BfuI GTATCC 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 1026
BglII AGATCT 1 cut(s) 1876
BisI GCNGC 4 cut(s) 274, 519, 788, 1488
BlpI GCTNAGC 1 cut(s) 269
BlsI GCNGC 4 cut(s) 275, 520, 789, 1489
BmcAI AGTACT 1 cut(s) 1833
Bme1390I CCNGG 8 cut(s) 84, 126, 255, 459, 514, 540, 630, 1254
Bme18I GGWCC 3 cut(s) 869, 975, 1302
BmgT120I GGNCC 4 cut(s) 869, 975, 1302, 1538
BmiI GGNNCC 5 cut(s) 503, 670, 871, 1258, 1270
BmrFI CCNGG 8 cut(s) 84, 126, 255, 459, 514, 540, 630, 1254
BmrI ACTGGG 2 cut(s) 108, 1798
BmsI GCATC 5 cut(s) 238, 615, 2207, 2228, 2250
BmtI GCTAGC 1 cut(s) 2144
BmuI ACTGGG 2 cut(s) 108, 1798
BpiI GAAGAC 2 cut(s) 897, 1515
BpmI CTGGAG 2 cut(s) 1640, 2259
Bpu1102I GCTNAGC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 1809
BpuMI CCSGG 4 cut(s) 255, 459, 540, 630
BsaAI YACGTR 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 1959
BsaHI GRCGYC 2 cut(s) 485, 502
BsaJI CCNNGG 3 cut(s) 124, 513, 1272
BsaWI WCCGGW 2 cut(s) 383, 977
Bsc4I CCNNNNNNNGG 5 cut(s) 539, 591, 961, 1299, 1587
Bse1I ACTGG 5 cut(s) 103, 370, 934, 1209, 1793
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 3 cut(s) 357, 862, 1917
Bse8I GATNNNNATC 1 cut(s) 1959
BseAI TCCGGA 1 cut(s) 383
BseBI CCWGG 4 cut(s) 84, 126, 514, 1254
BseDI CCNNGG 3 cut(s) 124, 513, 1272
BseGI GGATG 6 cut(s) 304, 436, 509, 1909, 2059, 2241
BseJI GATNNNNATC 1 cut(s) 1959
BseLI CCNNNNNNNGG 5 cut(s) 539, 591, 961, 1299, 1587
BseMI GCAATG 3 cut(s) 357, 862, 1917
BseMII CTCAG 4 cut(s) 147, 283, 389, 2034
BseNI ACTGG 5 cut(s) 103, 370, 934, 1209, 1793
BseXI GCAGC 4 cut(s) 285, 530, 774, 1474
BsgI GTGCAG 1 cut(s) 1449
BshFI GGCC 5 cut(s) 492, 584, 1020, 1539, 1580
BshNI GGYRCC 2 cut(s) 501, 1268
BsiSI CCGG 9 cut(s) 254, 384, 459, 540, 629, 978, 1061, 1562, 2218
BslFI GGGAC 4 cut(s) 855, 1171, 1189, 2008
BslI CCNNNNNNNGG 5 cut(s) 539, 591, 961, 1299, 1587
BsmAI GTCTC 2 cut(s) 1327, 1682
BsmBI CGTCTC 1 cut(s) 1682
BsmFI GGGAC 4 cut(s) 855, 1171, 1189, 2008
BsmI GAATGC 2 cut(s) 835, 2110
BsnI GGCC 5 cut(s) 492, 584, 1020, 1539, 1580
Bsp13I TCCGGA 1 cut(s) 383
Bsp143I GATC 9 cut(s) 433, 529, 562, 668, 1207, 1716, 1762, 1876, 2281
Bsp1720I GCTNAGC 1 cut(s) 269
BspACI CCGC 5 cut(s) 242, 867, 962, 1300, 1437
BspANI GGCC 5 cut(s) 492, 584, 1020, 1539, 1580
BspCNI CTCAG 4 cut(s) 148, 282, 390, 2035
BspEI TCCGGA 1 cut(s) 383
BspHI TCATGA 3 cut(s) 1618, 1626, 2224
BspLI GGNNCC 5 cut(s) 503, 670, 871, 1258, 1270
BspMI ACCTGC 2 cut(s) 349, 2365
BspOI GCTAGC 1 cut(s) 2144
BspPI GGATC 6 cut(s) 524, 557, 663, 676, 1215, 1757
BspT107I GGYRCC 2 cut(s) 501, 1268
BsrDI GCAATG 3 cut(s) 357, 862, 1917
BsrI ACTGG 5 cut(s) 103, 370, 934, 1209, 1793
BssECI CCNNGG 3 cut(s) 124, 513, 1272
BssMI GATC 9 cut(s) 433, 529, 562, 668, 1207, 1716, 1762, 1876, 2281
BssNAI GTATAC 2 cut(s) 185, 1796
BssNI GRCGYC 2 cut(s) 485, 502
BssT1I CCWWGG 1 cut(s) 1272
Bst1107I GTATAC 2 cut(s) 185, 1796
Bst2UI CCWGG 4 cut(s) 84, 126, 514, 1254
Bst4CI ACNGT 3 cut(s) 825, 848, 1127
Bst6I CTCTTC 2 cut(s) 1393, 1469
BstACI GRCGYC 2 cut(s) 485, 502
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 556, 2142
BstDEI CTNAG 5 cut(s) 139, 156, 269, 398, 2043
BstF5I GGATG 6 cut(s) 304, 436, 509, 1909, 2059, 2241
BstH2I RGCGCY 2 cut(s) 505, 524
BstHHI GCGC 2 cut(s) 504, 523
BstKTI GATC 9 cut(s) 436, 532, 565, 671, 1210, 1719, 1765, 1879, 2284
BstMAI GTCTC 2 cut(s) 1327, 1682
BstMBI GATC 9 cut(s) 433, 529, 562, 668, 1207, 1716, 1762, 1876, 2281
BstMWI GCNNNNNNNGC 2 cut(s) 793, 1026
BstNI CCWGG 4 cut(s) 84, 126, 514, 1254
BstNSI RCATGY 3 cut(s) 1011, 1732, 2011
BstSCI CCNGG 8 cut(s) 82, 124, 253, 457, 512, 538, 628, 1252
BstSFI CTRYAG 1 cut(s) 1326
BstV1I GCAGC 4 cut(s) 285, 530, 774, 1474
BstV2I GAAGAC 2 cut(s) 897, 1515
BstX2I RGATCY 3 cut(s) 668, 1207, 1876
BstYI RGATCY 3 cut(s) 668, 1207, 1876
BstZ17I GTATAC 2 cut(s) 185, 1796
Bsu36I CCTNAGG 1 cut(s) 139
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 5 cut(s) 492, 584, 1020, 1539, 1580
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 6 cut(s) 304, 436, 509, 1909, 2059, 2241
BtsIMutI CAGTG 2 cut(s) 96, 1432
BveI ACCTGC 2 cut(s) 349, 2365
Cac8I GCNNGC 2 cut(s) 556, 2142
CaiI CAGNNNCTG 1 cut(s) 790
CciI TCATGA 3 cut(s) 1618, 1626, 2224
CfoI GCGC 2 cut(s) 504, 523
Cfr13I GGNCC 4 cut(s) 869, 975, 1302, 1538
CseI GACGC 1 cut(s) 2204
Csp6I GTAC 6 cut(s) 60, 80, 129, 572, 1726, 1832
CviQI GTAC 6 cut(s) 60, 80, 129, 572, 1726, 1832
DdeI CTNAG 5 cut(s) 139, 156, 269, 398, 2043
DinI GGCGCC 1 cut(s) 503
DpnI GATC 9 cut(s) 435, 531, 564, 670, 1209, 1718, 1764, 1878, 2283
DpnII GATC 9 cut(s) 433, 529, 562, 668, 1207, 1716, 1762, 1876, 2281
DraI TTTAAA 1 cut(s) 937
DraIII CACNNNGTG 1 cut(s) 839
EaeI YGGCCR 2 cut(s) 490, 1578
Eam1104I CTCTTC 2 cut(s) 1393, 1469
EarI CTCTTC 2 cut(s) 1393, 1469
Eco130I CCWWGG 1 cut(s) 1272
Eco47I GGWCC 3 cut(s) 869, 975, 1302
Eco47III AGCGCT 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 1527, 1989
Eco81I CCTNAGG 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 4 cut(s) 82, 124, 512, 1252
EcoT14I CCWWGG 1 cut(s) 1272
EcoT22I ATGCAT 1 cut(s) 2243
EgeI GGCGCC 1 cut(s) 503
EheI GGCGCC 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 1272
Esp3I CGTCTC 1 cut(s) 1682
FalI AAGNNNNNCTT 6 cut(s) 402, 434, 458, 490, 2197, 2229
FaqI GGGAC 4 cut(s) 855, 1171, 1189, 2008
FauI CCCGC 1 cut(s) 1430
FauNDI CATATG 2 cut(s) 1231, 2310
FblI GTMKAC 2 cut(s) 184, 1795
Fnu4HI GCNGC 4 cut(s) 274, 519, 788, 1488
FokI GGATG 6 cut(s) 311, 423, 496, 1916, 2066, 2228
Fsp4HI GCNGC 4 cut(s) 274, 519, 788, 1488
GlaI GCGC 2 cut(s) 503, 522
GluI GCNGC 4 cut(s) 274, 519, 788, 1488
GsuI CTGGAG 2 cut(s) 1640, 2259
HaeII RGCGCY 2 cut(s) 505, 524
HaeIII GGCC 5 cut(s) 492, 584, 1020, 1539, 1580
HapII CCGG 9 cut(s) 254, 384, 459, 540, 629, 978, 1061, 1562, 2218
HgaI GACGC 1 cut(s) 2204
HhaI GCGC 2 cut(s) 504, 523
Hin1I GRCGYC 2 cut(s) 485, 502
Hin6I GCGC 2 cut(s) 502, 521
HinP1I GCGC 2 cut(s) 502, 521
HincII GTYRAC 2 cut(s) 324, 1005
HindII GTYRAC 2 cut(s) 324, 1005
HindIII AAGCTT 2 cut(s) 1040, 2229
HpaII CCGG 9 cut(s) 254, 384, 459, 540, 629, 978, 1061, 1562, 2218
HphI GGTGA 4 cut(s) 406, 903, 1063, 2004
Hpy166II GTNNAC 6 cut(s) 185, 324, 549, 1005, 1472, 1796
Hpy188III TCNNGA 9 cut(s) 155, 384, 1571, 1619, 1627, 1745, 1854, 2225, 2267
Hpy8I GTNNAC 6 cut(s) 185, 324, 549, 1005, 1472, 1796
HpyAV CCTTC 3 cut(s) 589, 1776, 2165
HpyCH4III ACNGT 3 cut(s) 825, 848, 1127
HpyCH4IV ACGT 3 cut(s) 62, 131, 485
HpyCH4V TGCA 9 cut(s) 212, 350, 833, 918, 1134, 1316, 1430, 2024, 2241
HpyF10VI GCNNNNNNNGC 2 cut(s) 793, 1026
HpyF3I CTNAG 5 cut(s) 139, 156, 269, 398, 2043
HpySE526I ACGT 3 cut(s) 62, 131, 485
Hsp92I GRCGYC 2 cut(s) 485, 502
HspAI GCGC 2 cut(s) 502, 521
KasI GGCGCC 1 cut(s) 501
Kpn2I TCCGGA 1 cut(s) 383
Kzo9I GATC 9 cut(s) 433, 529, 562, 668, 1207, 1716, 1762, 1876, 2281
LmnI GCTCC 5 cut(s) 256, 1262, 1476, 1907, 2278
Lsp1109I GCAGC 4 cut(s) 285, 530, 774, 1474
LweI GCATC 5 cut(s) 238, 615, 2207, 2228, 2250
MaeII ACGT 3 cut(s) 62, 131, 485
MaeIII GTNAC 7 cut(s) 17, 25, 412, 1013, 2010, 2389, 2413
MalI GATC 9 cut(s) 435, 531, 564, 670, 1209, 1718, 1764, 1878, 2283
MboI GATC 9 cut(s) 433, 529, 562, 668, 1207, 1716, 1762, 1876, 2281
MflI RGATCY 3 cut(s) 668, 1207, 1876
MlsI TGGCCA 2 cut(s) 492, 1580
MluNI TGGCCA 2 cut(s) 492, 1580
Mly113I GGCGCC 1 cut(s) 502
MlyI GAGTC 1 cut(s) 772
MmeI TCCRAC 4 cut(s) 276, 791, 1315, 1764
Mox20I TGGCCA 2 cut(s) 492, 1580
Mph1103I ATGCAT 1 cut(s) 2243
MroI TCCGGA 1 cut(s) 383
MscI TGGCCA 2 cut(s) 492, 1580
MseI TTAA 4 cut(s) 936, 1079, 1152, 1287
MslI CAYNNNNRTG 3 cut(s) 217, 913, 919
Msp20I TGGCCA 2 cut(s) 492, 1580
MspA1I CMGCKG 2 cut(s) 787, 2279
MspI CCGG 9 cut(s) 254, 384, 459, 540, 629, 978, 1061, 1562, 2218
MspR9I CCNGG 8 cut(s) 84, 126, 255, 459, 514, 540, 630, 1254
Mva1269I GAATGC 2 cut(s) 835, 2110
MvaI CCWGG 4 cut(s) 84, 126, 514, 1254
MwoI GCNNNNNNNGC 2 cut(s) 793, 1026
NarI GGCGCC 1 cut(s) 502
NciI CCSGG 4 cut(s) 255, 459, 540, 630
NdeI CATATG 2 cut(s) 1231, 2310
NdeII GATC 9 cut(s) 433, 529, 562, 668, 1207, 1716, 1762, 1876, 2281
NheI GCTAGC 1 cut(s) 2140
NlaIV GGNNCC 5 cut(s) 503, 670, 871, 1258, 1270
NmuCI GTSAC 3 cut(s) 412, 2010, 2413
NsiI ATGCAT 1 cut(s) 2243
NspI RCATGY 3 cut(s) 1011, 1732, 2011
PagI TCATGA 3 cut(s) 1618, 1626, 2224
PciI ACATGT 2 cut(s) 1007, 2007
PctI GAATGC 2 cut(s) 835, 2110
PflMI CCANNNNNTGG 1 cut(s) 591
PkrI GCNGC 4 cut(s) 275, 520, 789, 1489
PleI GAGTC 1 cut(s) 771
PluTI GGCGCC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 771
Ppu21I YACGTR 1 cut(s) 63
PscI ACATGT 2 cut(s) 1007, 2007
PsiI TTATAA 1 cut(s) 1548
Psp6I CCWGG 4 cut(s) 82, 124, 512, 1252
PspGI CCWGG 4 cut(s) 82, 124, 512, 1252
PspN4I GGNNCC 5 cut(s) 503, 670, 871, 1258, 1270
PspPI GGNCC 4 cut(s) 869, 975, 1302, 1538
PstNI CAGNNNCTG 1 cut(s) 790
PsuI RGATCY 3 cut(s) 668, 1207, 1876
PvuII CAGCTG 2 cut(s) 787, 2279
RsaI GTAC 6 cut(s) 61, 81, 130, 573, 1727, 1833
RsaNI GTAC 6 cut(s) 60, 80, 129, 572, 1726, 1832
RseI CAYNNNNRTG 3 cut(s) 217, 913, 919
SaqAI TTAA 4 cut(s) 936, 1079, 1152, 1287
SatI GCNGC 4 cut(s) 274, 519, 788, 1488
Sau3AI GATC 9 cut(s) 433, 529, 562, 668, 1207, 1716, 1762, 1876, 2281
Sau96I GGNCC 4 cut(s) 869, 975, 1302, 1538
ScaI AGTACT 1 cut(s) 1833
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 8 cut(s) 84, 126, 255, 459, 514, 540, 630, 1254
SfaNI GCATC 5 cut(s) 238, 615, 2207, 2228, 2250
SfcI CTRYAG 1 cut(s) 1326
SfoI GGCGCC 1 cut(s) 503
SinI GGWCC 3 cut(s) 869, 975, 1302
SmiMI CAYNNNNRTG 3 cut(s) 217, 913, 919
SmlI CTYRAG 1 cut(s) 1824
SmoI CTYRAG 1 cut(s) 1824
SpeI ACTAGT 1 cut(s) 326
SsiI CCGC 5 cut(s) 242, 867, 962, 1300, 1437
SspDI GGCGCC 1 cut(s) 501
StyD4I CCNGG 8 cut(s) 82, 124, 253, 457, 512, 538, 628, 1252
StyI CCWWGG 1 cut(s) 1272
TaaI ACNGT 3 cut(s) 825, 848, 1127
TaiI ACGT 3 cut(s) 65, 134, 488
TaqI TCGA 6 cut(s) 432, 1738, 1804, 2284, 2322, 2437
TatI WGTACW 2 cut(s) 1725, 1831
Tru1I TTAA 4 cut(s) 936, 1079, 1152, 1287
Tru9I TTAA 4 cut(s) 936, 1079, 1152, 1287
TscAI CASTG 2 cut(s) 103, 1432
TseFI GTSAC 3 cut(s) 412, 2010, 2413
TseI GCWGC 4 cut(s) 273, 518, 787, 1487
Tsp45I GTSAC 3 cut(s) 412, 2010, 2413
TspGWI ACGGA 1 cut(s) 1489
TspRI CASTG 2 cut(s) 103, 1432
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 3 cut(s) 869, 975, 1302
XapI RAATTY 4 cut(s) 160, 1554, 1751, 2127
XbaI TCTAGA 1 cut(s) 1853
XceI RCATGY 3 cut(s) 1011, 1732, 2011
XmiI GTMKAC 2 cut(s) 184, 1795
ZraI GACGTC 1 cut(s) 486
ZrmI AGTACT 1 cut(s) 1833
Zsp2I ATGCAT 1 cut(s) 2243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.