RchiOBHm_Chr1g0326591

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000114
Physical Location & Seq
Reverse (-)
15095335 .. 15098461
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2466 bp
ATGAACCTTTTTTTCCTTCGACCTCTTCTTCCTCTGTCTCACTGTTTCCGAATGGGGTGGCTCTTGTGTTACCTTGTAACAGTGCTCTTATCTCATATCCTGCCATTCTGTACCTGCCAAGACAAAATTGTACCAGGACAGCATATCAGTGGTAACCTGACTTTGGTTTCTTCCCTTGGGACCTTTTCATTAGGCTTCTTCAATCCTGAAAATTCTACTAAATACTTCCTTGGTATACGATTCAACAAATCCCCAACTACTGCATTAGTATGGGTAGCTAATAGAGAATCTCCACTTGATTCTCCGGGTTTCTTTATGCTCAGCAGTGATGGAAATCTTGTGGTGTTGGATCAGACTAGAAAACTTGTCTGGTCAACTAAAGCATCCGTATCTGCTTCTGCAATGAATCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGAAGTCACTTTGTGGCAGAGCTTCGATCATCCCTCTGATACTGCGTTGCCTGGCATGAAGATTAGCTTGAACAAAACGACTGGCAAACAAAGGCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAGTTCACCTGCGGCATAGATCCTAAAGTACCATTTCAGGCCTTTATCTGGAAGGAAACTACTCCGTATTATAGAAGTTCTGTGTTCATTGGCAAGGCTACAAGAACACAGTTTCAAAATCCAGGTGGAACCGCGTTTTTCTTTTCATACAACTTTGATGTTGATGAGGTCTATCTTGTTTACAGTGTCTCGGATAGCTCAGTAAAATTGAGGGTCTGGTTGGATCCTACGGGGCAACTTAAACATCAGTTGTGGCAGAATTCTAGTAAAACGTGGTTGGAAGTAGTGAATCCATGGCCCGTTGATATCTGTGATTTTTATGCTCATTGCGGTCCCAATAGTGCCTGTCGTAGAGGTGAACCCCTGTCATCACCATGCAAGTGTTTGACTGGTTTTACAGCCAAGTTTCCGAACCAATCGGCGGTAGGGGATTGGTCCAGTGGCTGCATTAGGGAAAAGGTGTTGACATGTGGTAACGGCAAACAAGGTTACTTTTCAAAGCTTGAAAAGGTGAAACTGCCGGATCATTCTGTTCTGTTAGAGAATAGGAGTATGAGCGAGTGTGACTCTGAATGCCAGCAGAACTGTTCTTGTACAGCTTATGCTTATGTAAATGCGACAGATGGAAGTAATATTGGGACTTGTTTGGCATGGTTTAGCGAATTACTGGATCTAGTAGAGAATAAAACTACTGATGCAAATGATATTTATATTCGTGTTCATGGCTCCGAACTAGGCAAAAAGGGTCTTTCCGTTAATTCCTTGAAGCGGACCCTTGTAATTGCAATAGTCTCTGCAGCTGCAGTTGGATTGCTTACAATAACTTTTGGCTATTTCTTTTGGAAGAAAAAATTGGAAAAGAAAGGTAAGCAGAATATAAGTAATGTTAGTGCAGGAGGTGGGAAGAATGATACAGAATTACCACTCTTCAGTTTAAGGAGTATGCTAGCTGCTACAAACAACTTCTCTGAAGCGAATAAGCTTGGAGAGGGGGAAAATCAAGAAGTGGCCATAAAGAGGCTATCAAAGAAGTCTGGGCAAGGACATCATGAGTTCAAGAATGAGTTGAAACTTATAGCCAAACTCCAGCATACCAATCTTGTAAGGCTATTGGGTTGTTGTATGGAAGGAGATGAAATGATATTGATCTATGAATACATGTCTAATCGAAGTTTGGACAAATTTTTGTTTGATGCCTTTGAAAAGATAAAGTTAGATTGGGATACACGCTTTCGAATTATACAAGGTATTGCTCAAGGAGTACTATATATCCACAAGTACTCTAGATTGAAAATCATCCACAGAGATCTAAAAGCAAGCAATGTTCTGTTGGATGGAACAATGAACCCCAAAGTGTCTGACTTTGGAATGGCGAGAATTTTTGACATAAATCAAATTGAAGCAAATACTAACAAGGTTGTTGGAACATACGGCTATATGTCTCCTGAATATGCACTCTTTGGTCATTTCTCCGAGAAATTGGATGTATTTAGCTTCGGAGTGTTGTTGTTAGAGATTGTAAGCGGAAAGAAGAATGCTTCTTTTTATAGCTTTGAAAATTCACTAACGCTTGCTCAATGGGTATGGGAATTATGGAAAGAAGGTAGAGGAGTGGAGGTAATTGATGCATCAGTAAGGGAAACATGTCGGATTCATGAAGCTTTGAGGTGTATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGTTGATCGACCAACAATGTCATCCGTGATTCATATGCTCGAGGTTGACGAAGCTACATCACTTCCACCCTCCAAAGAACCAGCTTTTTCAACATGTAAAAATTCAAGTCCTGTTACCATTTTTTCTAACAATGTAATCACCATTACTTTGCCAGAACCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

821

Amino Acids

91.78

Weight (kDa)

8.06

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 89 - 189 1.9e-31 D-mannose binding lectin
S_locus_glycop PF00954 247 - 333 2.3e-16 S-locus glycoprotein domain
PAN_2 PF08276 358 - 423 2.6e-14 PAN-like domain
PK_Tyr_Ser-Thr PF07714 526 - 779 1.1e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 529 - 712 6.1e-39 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 611
Acc36I ACCTGC 2 cut(s) 122, 611
AccB1I GGYRCC 1 cut(s) 552
AccI GTMKAC 1 cut(s) 235
AccII CGCG 1 cut(s) 728
AciI CCGC 6 cut(s) 606, 726, 924, 1016, 1363, 2118
AclWI GGATC 7 cut(s) 357, 575, 608, 812, 825, 1125, 1272
AcoI YGGCCR 1 cut(s) 1602
AcsI RAATTY 6 cut(s) 211, 853, 1775, 1971, 2152, 2401
AcuI CTGAAG 2 cut(s) 1507, 1584
AcyI GRCGYC 1 cut(s) 553
AdeI CACNNNGTG 1 cut(s) 471
AfaI GTAC 6 cut(s) 112, 132, 624, 1189, 1857, 1874
AfeI AGCGCT 1 cut(s) 573
AfiI CCNNNNNNNGG 6 cut(s) 163, 590, 642, 1015, 1362, 1611
AflIII ACRYGT 4 cut(s) 1061, 1752, 2237, 2393
AjnI CCWGG 4 cut(s) 133, 508, 563, 715
AjuI GAANNNNNNNTTGG 2 cut(s) 1430, 1462
AloI GAACNNNNNNTCC 2 cut(s) 429, 461
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 4 cut(s) 42, 787, 1390, 2040
AlwI GGATC 7 cut(s) 357, 575, 608, 812, 825, 1125, 1272
AlwNI CAGNNNCTG 1 cut(s) 1038
Ama87I CYCGRG 1 cut(s) 2339
Aor51HI AGCGCT 1 cut(s) 573
AoxI GGCC 3 cut(s) 633, 890, 1602
ApeKI GCWGC 5 cut(s) 569, 1038, 1391, 1394, 1544
ApoI RAATTY 6 cut(s) 211, 853, 1775, 1971, 2152, 2401
AspLEI GCGC 2 cut(s) 555, 574
AspS9I GGNCC 5 cut(s) 180, 891, 926, 1029, 1365
AsuC2I CCSGG 2 cut(s) 306, 591
AsuHPI GGTGA 5 cut(s) 592, 957, 962, 1117, 2431
AsuII TTCGAA 1 cut(s) 1828
AsuNHI GCTAGC 1 cut(s) 1540
AvaI CYCGRG 1 cut(s) 2339
AvaII GGWCC 4 cut(s) 180, 926, 1029, 1365
BalI TGGCCA 1 cut(s) 1604
BamHI GGATCC 1 cut(s) 817
BanI GGYRCC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 5 cut(s) 581, 1025, 1381, 1403, 1531
BccI CCATC 3 cut(s) 323, 1211, 1922
BceAI ACGGC 2 cut(s) 1087, 2041
BciT130I CCWGG 4 cut(s) 135, 510, 565, 717
BciVI GTATCC 3 cut(s) 424, 1810, 2276
BcnI CCSGG 2 cut(s) 306, 591
BcoDI GTCTC 4 cut(s) 42, 787, 1390, 2040
BfaI CTAG 7 cut(s) 357, 425, 858, 1268, 1328, 1541, 1878
BfmI CTRYAG 2 cut(s) 1389, 1395
BfoI RGCGCY 2 cut(s) 556, 575
BfuAI ACCTGC 2 cut(s) 122, 611
BfuI GTATCC 3 cut(s) 424, 1810, 2276
BglII AGATCT 1 cut(s) 1900
BisI GCNGC 6 cut(s) 570, 607, 1039, 1392, 1395, 1545
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 6 cut(s) 571, 608, 1040, 1393, 1396, 1546
BmcAI AGTACT 2 cut(s) 1857, 1874
Bme1390I CCNGG 6 cut(s) 135, 306, 510, 565, 591, 717
Bme18I GGWCC 4 cut(s) 180, 926, 1029, 1365
BmeT110I CYCGRG 1 cut(s) 2339
BmgT120I GGNCC 5 cut(s) 180, 891, 926, 1029, 1365
BmiI GGNNCC 7 cut(s) 181, 554, 724, 819, 928, 1321, 1367
BmrFI CCNGG 6 cut(s) 135, 306, 510, 565, 591, 717
BmsI GCATC 5 cut(s) 392, 1279, 1777, 2209, 2231
BmtI GCTAGC 1 cut(s) 1544
BplI GAGNNNNNCTC 2 cut(s) 1145, 1177
BpmI CTGGAG 2 cut(s) 1664, 2283
Bpu1102I GCTNAGC 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 1828
BpuEI CTTGAG 1 cut(s) 1833
BpuMI CCSGG 2 cut(s) 306, 591
BsaBI GATNNNNATC 2 cut(s) 333, 1739
BsaHI GRCGYC 1 cut(s) 553
BsaJI CCNNGG 4 cut(s) 175, 229, 564, 887
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 2196, 2226
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 590, 642, 1015, 1362, 1611
Bse1I ACTGG 6 cut(s) 421, 544, 988, 1032, 1266, 2300
Bse3DI GCAATG 3 cut(s) 408, 919, 1921
Bse8I GATNNNNATC 2 cut(s) 333, 1739
BseBI CCWGG 4 cut(s) 135, 510, 565, 717
BseDI CCNNGG 4 cut(s) 175, 229, 564, 887
BseGI GGATG 7 cut(s) 383, 487, 560, 1890, 1933, 2083, 2321
BseJI GATNNNNATC 2 cut(s) 333, 1739
BseLI CCNNNNNNNGG 6 cut(s) 163, 590, 642, 1015, 1362, 1611
BseMI GCAATG 3 cut(s) 408, 919, 1921
BseMII CTCAG 3 cut(s) 334, 440, 807
BseNI ACTGG 6 cut(s) 421, 544, 988, 1032, 1266, 2300
BseRI GAGGAG 1 cut(s) 2217
BseXI GCAGC 5 cut(s) 581, 1025, 1381, 1403, 1531
BsgI GTGCAG 1 cut(s) 1506
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 3 cut(s) 635, 892, 1604
BshNI GGYRCC 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 2339
BsiSI CCGG 4 cut(s) 305, 435, 591, 1115
BslFI GGGAC 3 cut(s) 193, 912, 1246
BslI CCNNNNNNNGG 6 cut(s) 163, 590, 642, 1015, 1362, 1611
BsmAI GTCTC 4 cut(s) 42, 787, 1390, 2040
BsmFI GGGAC 3 cut(s) 193, 912, 1246
BsmI GAATGC 2 cut(s) 1172, 2134
BsnI GGCC 3 cut(s) 635, 892, 1604
BsoBI CYCGRG 1 cut(s) 2339
Bsp119I TTCGAA 1 cut(s) 1828
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 1187
Bsp1720I GCTNAGC 1 cut(s) 320
Bsp19I CCATGG 1 cut(s) 887
BspACI CCGC 6 cut(s) 606, 726, 924, 1016, 1363, 2118
BspANI GGCC 3 cut(s) 635, 892, 1604
BspCNI CTCAG 3 cut(s) 333, 441, 806
BspFNI CGCG 1 cut(s) 728
BspHI TCATGA 2 cut(s) 1642, 2248
BspLI GGNNCC 7 cut(s) 181, 554, 724, 819, 928, 1321, 1367
BspMAI CTGCAG 2 cut(s) 1393, 1399
BspMI ACCTGC 2 cut(s) 122, 611
BspOI GCTAGC 1 cut(s) 1544
BspPI GGATC 7 cut(s) 357, 575, 608, 812, 825, 1125, 1272
BspT104I TTCGAA 1 cut(s) 1828
BspT107I GGYRCC 1 cut(s) 552
BsrDI GCAATG 3 cut(s) 408, 919, 1921
BsrGI TGTACA 1 cut(s) 1187
BsrI ACTGG 6 cut(s) 421, 544, 988, 1032, 1266, 2300
BssECI CCNNGG 4 cut(s) 175, 229, 564, 887
BssNAI GTATAC 1 cut(s) 236
BssNI GRCGYC 1 cut(s) 553
BssT1I CCWWGG 3 cut(s) 175, 229, 887
Bst1107I GTATAC 1 cut(s) 236
Bst2UI CCWGG 4 cut(s) 135, 510, 565, 717
Bst4CI ACNGT 5 cut(s) 44, 82, 705, 779, 1181
Bst6I CTCTTC 2 cut(s) 30, 1526
BstACI GRCGYC 1 cut(s) 553
BstAUI TGTACA 1 cut(s) 1187
BstBI TTCGAA 1 cut(s) 1828
BstC8I GCNNGC 4 cut(s) 1172, 1542, 1912, 2166
BstDEI CTNAG 3 cut(s) 320, 449, 793
BstDSI CCRYGG 1 cut(s) 887
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 7 cut(s) 383, 487, 560, 1890, 1933, 2083, 2321
BstFNI CGCG 1 cut(s) 728
BstH2I RGCGCY 2 cut(s) 556, 575
BstHHI GCGC 2 cut(s) 555, 574
BstMAI GTCTC 4 cut(s) 42, 787, 1390, 2040
BstNI CCWGG 4 cut(s) 135, 510, 565, 717
BstNSI RCATGY 4 cut(s) 1065, 1756, 2241, 2397
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 6 cut(s) 133, 304, 508, 563, 589, 715
BstSFI CTRYAG 2 cut(s) 1389, 1395
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 5 cut(s) 581, 1025, 1381, 1403, 1531
BstX2I RGATCY 4 cut(s) 613, 817, 1264, 1900
BstYI RGATCY 4 cut(s) 613, 817, 1264, 1900
BstZ17I GTATAC 1 cut(s) 236
BsuI GTATCC 3 cut(s) 424, 1810, 2276
BsuRI GGCC 3 cut(s) 635, 892, 1604
BtgI CCRYGG 1 cut(s) 887
BtsCI GGATG 7 cut(s) 383, 487, 560, 1890, 1933, 2083, 2321
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 6 cut(s) 40, 87, 154, 331, 784, 1039
BveI ACCTGC 2 cut(s) 122, 611
Cac8I GCNNGC 4 cut(s) 1172, 1542, 1912, 2166
CaiI CAGNNNCTG 1 cut(s) 1038
CciI TCATGA 2 cut(s) 1642, 2248
CfoI GCGC 2 cut(s) 555, 574
Cfr13I GGNCC 5 cut(s) 180, 891, 926, 1029, 1365
Csp6I GTAC 6 cut(s) 111, 131, 623, 1188, 1856, 1873
CviQI GTAC 6 cut(s) 111, 131, 623, 1188, 1856, 1873
DdeI CTNAG 3 cut(s) 320, 449, 793
DinI GGCGCC 1 cut(s) 554
DraIII CACNNNGTG 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 1602
Eam1104I CTCTTC 2 cut(s) 30, 1526
EarI CTCTTC 2 cut(s) 30, 1526
Eco130I CCWWGG 3 cut(s) 175, 229, 887
Eco147I AGGCCT 1 cut(s) 635
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 4 cut(s) 180, 926, 1029, 1365
Eco47III AGCGCT 1 cut(s) 573
Eco57I CTGAAG 2 cut(s) 1507, 1584
Eco88I CYCGRG 1 cut(s) 2339
Eco91I GGTNACC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 180
EcoO65I GGTNACC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 4 cut(s) 133, 508, 563, 715
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 3 cut(s) 175, 229, 887
EcoT22I ATGCAT 1 cut(s) 2224
EgeI GGCGCC 1 cut(s) 554
EheI GGCGCC 1 cut(s) 554
ErhI CCWWGG 3 cut(s) 175, 229, 887
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 3 cut(s) 193, 912, 1246
FauNDI CATATG 1 cut(s) 2334
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 6 cut(s) 570, 607, 1039, 1392, 1395, 1545
FokI GGATG 7 cut(s) 370, 474, 547, 1877, 1940, 2090, 2308
Fsp4HI GCNGC 6 cut(s) 570, 607, 1039, 1392, 1395, 1545
FspBI CTAG 7 cut(s) 357, 425, 858, 1268, 1328, 1541, 1878
GlaI GCGC 2 cut(s) 554, 573
GluI GCNGC 6 cut(s) 570, 607, 1039, 1392, 1395, 1545
GsuI CTGGAG 2 cut(s) 1664, 2283
HaeII RGCGCY 2 cut(s) 556, 575
HaeIII GGCC 3 cut(s) 635, 892, 1604
HapII CCGG 4 cut(s) 305, 435, 591, 1115
HhaI GCGC 2 cut(s) 555, 574
Hin1I GRCGYC 1 cut(s) 553
Hin6I GCGC 2 cut(s) 553, 572
HinP1I GCGC 2 cut(s) 553, 572
HincII GTYRAC 3 cut(s) 375, 1059, 2347
HindII GTYRAC 3 cut(s) 375, 1059, 2347
HindIII AAGCTT 3 cut(s) 1094, 1574, 2253
HinfI GANTC 8 cut(s) 240, 287, 299, 406, 883, 1160, 2245, 2329
HpaII CCGG 4 cut(s) 305, 435, 591, 1115
HphI GGTGA 5 cut(s) 592, 957, 962, 1117, 2431
Hpy166II GTNNAC 7 cut(s) 236, 375, 600, 775, 953, 1059, 2347
Hpy188III TCNNGA 9 cut(s) 206, 643, 1595, 1643, 1651, 1878, 2039, 2249, 2291
Hpy8I GTNNAC 7 cut(s) 236, 375, 600, 775, 953, 1059, 2347
HpyAV CCTTC 4 cut(s) 26, 640, 1715, 2189
HpyCH4III ACNGT 5 cut(s) 44, 82, 705, 779, 1181
HpyCH4IV ACGT 1 cut(s) 866
HpyF3I CTNAG 3 cut(s) 320, 449, 793
HpySE526I ACGT 1 cut(s) 866
Hsp92I GRCGYC 1 cut(s) 553
HspAI GCGC 2 cut(s) 553, 572
KasI GGCGCC 1 cut(s) 552
LmnI GCTCC 2 cut(s) 1325, 2302
Lsp1109I GCAGC 5 cut(s) 581, 1025, 1381, 1403, 1531
LweI GCATC 5 cut(s) 392, 1279, 1777, 2209, 2231
MaeI CTAG 7 cut(s) 357, 425, 858, 1268, 1328, 1541, 1878
MaeII ACGT 1 cut(s) 866
MaeIII GTNAC 8 cut(s) 68, 76, 152, 463, 1067, 1082, 1157, 2413
MflI RGATCY 4 cut(s) 613, 817, 1264, 1900
MhlI GDGCHC 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 1604
MluNI TGGCCA 1 cut(s) 1604
Mly113I GGCGCC 1 cut(s) 553
MlyI GAGTC 1 cut(s) 1154
MmeI TCCRAC 7 cut(s) 327, 795, 852, 1381, 1905, 1996, 2222
Mox20I TGGCCA 1 cut(s) 1604
Mph1103I ATGCAT 1 cut(s) 2224
MscI TGGCCA 1 cut(s) 1604
MseI TTAA 3 cut(s) 834, 1350, 1529
MslI CAYNNNNRTG 4 cut(s) 147, 268, 967, 973
Msp20I TGGCCA 1 cut(s) 1604
MspA1I CMGCKG 1 cut(s) 1394
MspI CCGG 4 cut(s) 305, 435, 591, 1115
MspR9I CCNGG 6 cut(s) 135, 306, 510, 565, 591, 717
Mva1269I GAATGC 2 cut(s) 1172, 2134
MvaI CCWGG 4 cut(s) 135, 510, 565, 717
MvnI CGCG 1 cut(s) 728
NarI GGCGCC 1 cut(s) 553
NciI CCSGG 2 cut(s) 306, 591
NcoI CCATGG 1 cut(s) 887
NdeI CATATG 1 cut(s) 2334
NheI GCTAGC 1 cut(s) 1540
NlaIV GGNNCC 7 cut(s) 181, 554, 724, 819, 928, 1321, 1367
NmuCI GTSAC 2 cut(s) 463, 1157
NsiI ATGCAT 1 cut(s) 2224
NspI RCATGY 4 cut(s) 1065, 1756, 2241, 2397
NspV TTCGAA 1 cut(s) 1828
PaeR7I CTCGAG 1 cut(s) 2339
PagI TCATGA 2 cut(s) 1642, 2248
PaqCI CACCTGC 1 cut(s) 611
PceI AGGCCT 1 cut(s) 635
PciI ACATGT 4 cut(s) 1061, 1752, 2237, 2393
PcsI WCGNNNNNNNCGW 1 cut(s) 2346
PctI GAATGC 2 cut(s) 1172, 2134
PfeI GAWTC 7 cut(s) 240, 287, 299, 406, 883, 2245, 2329
PkrI GCNGC 6 cut(s) 571, 608, 1040, 1393, 1396, 1546
PleI GAGTC 1 cut(s) 1154
PluTI GGCGCC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 1154
PpuMI RGGWCCY 1 cut(s) 180
PscI ACATGT 4 cut(s) 1061, 1752, 2237, 2393
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 4 cut(s) 133, 508, 563, 715
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 4 cut(s) 133, 508, 563, 715
PspN4I GGNNCC 7 cut(s) 181, 554, 724, 819, 928, 1321, 1367
PspPI GGNCC 5 cut(s) 180, 891, 926, 1029, 1365
PspPPI RGGWCCY 1 cut(s) 180
PspXI VCTCGAGB 1 cut(s) 2339
PstI CTGCAG 2 cut(s) 1393, 1399
PstNI CAGNNNCTG 1 cut(s) 1038
PsuI RGATCY 4 cut(s) 613, 817, 1264, 1900
PvuII CAGCTG 1 cut(s) 1394
RsaI GTAC 6 cut(s) 112, 132, 624, 1189, 1857, 1874
RsaNI GTAC 6 cut(s) 111, 131, 623, 1188, 1856, 1873
RseI CAYNNNNRTG 4 cut(s) 147, 268, 967, 973
SaqAI TTAA 3 cut(s) 834, 1350, 1529
SatI GCNGC 6 cut(s) 570, 607, 1039, 1392, 1395, 1545
Sau96I GGNCC 5 cut(s) 180, 891, 926, 1029, 1365
ScaI AGTACT 2 cut(s) 1857, 1874
SchI GAGTC 1 cut(s) 1154
ScrFI CCNGG 6 cut(s) 135, 306, 510, 565, 591, 717
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 5 cut(s) 392, 1279, 1777, 2209, 2231
SfcI CTRYAG 2 cut(s) 1389, 1395
SfoI GGCGCC 1 cut(s) 554
Sfr274I CTCGAG 1 cut(s) 2339
SfuI TTCGAA 1 cut(s) 1828
SinI GGWCC 4 cut(s) 180, 926, 1029, 1365
SlaI CTCGAG 1 cut(s) 2339
SmiMI CAYNNNNRTG 4 cut(s) 147, 268, 967, 973
SmlI CTYRAG 2 cut(s) 1848, 2339
SmoI CTYRAG 2 cut(s) 1848, 2339
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 6 cut(s) 606, 726, 924, 1016, 1363, 2118
SspDI GGCGCC 1 cut(s) 552
SspI AATATT 1 cut(s) 1228
SspMI CTAG 7 cut(s) 357, 425, 858, 1268, 1328, 1541, 1878
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 6 cut(s) 133, 304, 508, 563, 589, 715
StyI CCWWGG 3 cut(s) 175, 229, 887
TaaI ACNGT 5 cut(s) 44, 82, 705, 779, 1181
TaiI ACGT 1 cut(s) 869
TaqI TCGA 7 cut(s) 19, 483, 1762, 1828, 2308, 2340, 2461
TatI WGTACW 3 cut(s) 1187, 1855, 1872
TauI GCSGC 1 cut(s) 609
TfiI GAWTC 7 cut(s) 240, 287, 299, 406, 883, 2245, 2329
Tru1I TTAA 3 cut(s) 834, 1350, 1529
Tru9I TTAA 3 cut(s) 834, 1350, 1529
TscAI CASTG 6 cut(s) 47, 87, 154, 331, 784, 1039
TseFI GTSAC 2 cut(s) 463, 1157
TseI GCWGC 5 cut(s) 569, 1038, 1391, 1394, 1544
Tsp45I GTSAC 2 cut(s) 463, 1157
TspGWI ACGGA 4 cut(s) 376, 648, 1336, 2314
TspRI CASTG 6 cut(s) 47, 87, 154, 331, 784, 1039
VpaK11BI GGWCC 4 cut(s) 180, 926, 1029, 1365
XapI RAATTY 6 cut(s) 211, 853, 1775, 1971, 2152, 2401
XbaI TCTAGA 1 cut(s) 1877
XceI RCATGY 4 cut(s) 1065, 1756, 2241, 2397
XhoI CTCGAG 1 cut(s) 2339
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 7 cut(s) 357, 425, 858, 1268, 1328, 1541, 1878
ZrmI AGTACT 2 cut(s) 1857, 1874
Zsp2I ATGCAT 1 cut(s) 2224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.